Wall clock time and date at job start Mon Mar 30 2020 23:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00213 * 2 1 4 4 H 1.48498 * 109.47163 * 274.98958 * 3 2 1 5 5 H 1.48507 * 109.47205 * 34.98762 * 3 2 1 6 6 H 1.48502 * 109.47408 * 154.98561 * 3 2 1 7 7 C 1.40051 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00123 * 186.14348 * 7 2 1 9 9 C 1.46377 * 119.99553 * 6.14235 * 7 2 1 10 10 O 1.21690 * 120.00548 * 353.94546 * 9 7 2 11 11 N 1.34780 * 119.99358 * 173.94115 * 9 7 2 12 12 C 1.46507 * 119.99777 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47343 * 180.02562 * 12 11 9 14 14 N 1.46493 * 109.46953 * 180.02562 * 13 12 11 15 15 C 1.34782 * 119.99538 * 180.02562 * 14 13 12 16 16 O 1.21585 * 120.00044 * 359.97438 * 15 14 13 17 17 C 1.47599 * 119.99753 * 179.97438 * 15 14 13 18 18 C 1.39739 * 120.08607 * 179.97438 * 17 15 14 19 19 C 1.37704 * 119.90760 * 180.02562 * 18 17 15 20 20 C 1.38997 * 120.09012 * 0.02562 * 19 18 17 21 21 O 1.35712 * 119.91085 * 179.97438 * 20 19 18 22 22 C 1.38995 * 120.17553 * 0.24682 * 20 19 18 23 23 C 1.37696 * 120.09061 * 359.45567 * 22 20 19 24 24 H 0.97005 * 119.99669 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00419 * 359.97438 * 11 9 7 26 26 H 1.09007 * 109.47069 * 59.99653 * 12 11 9 27 27 H 1.09005 * 109.46882 * 300.00490 * 12 11 9 28 28 H 1.09002 * 109.46977 * 59.99911 * 13 12 11 29 29 H 1.09000 * 109.46832 * 300.00396 * 13 12 11 30 30 H 0.96996 * 120.00195 * 359.97438 * 14 13 12 31 31 H 1.07991 * 120.04528 * 359.97438 * 18 17 15 32 32 H 1.08001 * 119.95195 * 179.97438 * 19 18 17 33 33 H 0.96700 * 114.00043 * 89.99131 * 21 20 19 34 34 H 1.08006 * 119.95081 * 179.72663 * 22 20 19 35 35 H 1.08000 * 120.04626 * 180.27859 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3828 2.1072 -1.3947 5 1 1.4949 2.6199 0.8028 6 1 3.5871 1.4120 0.5920 7 6 2.0070 -1.2129 -0.0005 8 1 3.0822 -1.2156 0.0995 9 6 1.2813 -2.4768 -0.1368 10 8 0.0644 -2.4827 -0.1387 11 7 1.9611 -3.6341 -0.2601 12 6 1.2348 -4.8991 -0.3970 13 6 2.2348 -6.0507 -0.5187 14 7 1.5086 -7.3155 -0.6562 15 6 2.1883 -8.4729 -0.7786 16 8 3.4041 -8.4672 -0.7754 17 6 1.4566 -9.7473 -0.9166 18 6 2.1594 -10.9483 -1.0442 19 6 1.4731 -12.1352 -1.1732 20 6 0.0831 -12.1395 -1.1772 21 8 -0.5896 -13.3112 -1.3051 22 6 -0.6196 -10.9464 -1.0562 23 6 0.0592 -9.7561 -0.9206 24 1 -0.4850 0.8401 0.0004 25 1 2.9310 -3.6294 -0.2590 26 1 0.6096 -4.8644 -1.2893 27 1 0.6072 -5.0545 0.4805 28 1 2.8596 -6.0852 0.3738 29 1 2.8628 -5.8954 -1.3960 30 1 0.5386 -7.3201 -0.6583 31 1 3.2393 -10.9457 -1.0424 32 1 2.0156 -13.0638 -1.2723 33 1 -0.7867 -13.7454 -0.4638 34 1 -1.6996 -10.9535 -1.0641 35 1 -0.4875 -8.8299 -0.8221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274261815.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:02 Heat of formation + Delta-G solvation = -126.313117 kcal Electronic energy + Delta-G solvation = -19830.103613 eV Core-core repulsion = 16405.748918 eV Total energy + Delta-G solvation = -3424.354695 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.39661 -40.10118 -39.40532 -37.49050 -36.71421 -34.90238 -34.31578 -32.14008 -31.49171 -29.86051 -27.95155 -24.92558 -23.94928 -23.30950 -22.06323 -21.39055 -19.60655 -19.35790 -18.76865 -17.61692 -17.24530 -16.87081 -16.43760 -16.31862 -16.02713 -15.84829 -15.62151 -15.56524 -14.82315 -14.43258 -14.34505 -14.29651 -13.66519 -13.17022 -13.10100 -13.03783 -12.90553 -12.74247 -12.58872 -12.56854 -11.99988 -11.47803 -11.22179 -10.93456 -10.31935 -10.11981 -9.91463 -9.71129 -9.54873 -8.31567 -6.85974 -0.32701 0.28965 1.41683 1.42312 1.58422 1.68903 1.90306 2.27037 2.45788 2.70552 3.17404 3.23071 3.58900 3.63831 3.74913 3.87748 3.91753 4.08655 4.25891 4.40360 4.42299 4.68688 4.86628 4.90488 4.95147 5.12870 5.21210 5.27046 5.32615 5.33016 5.68426 5.85945 6.16454 6.23858 6.39309 6.80455 6.86419 7.05549 7.49285 8.45734 8.65092 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.048784 B = 0.002520 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.817866 B =11109.929698 C =11656.164895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.998 3.002 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.539 3.461 10 O -0.630 6.630 11 N -0.754 5.754 12 C 0.129 3.871 13 C 0.127 3.873 14 N -0.711 5.711 15 C 0.558 3.442 16 O -0.578 6.578 17 C -0.164 4.164 18 C -0.051 4.051 19 C -0.157 4.157 20 C 0.137 3.863 21 O -0.506 6.506 22 C -0.155 4.155 23 C -0.064 4.064 24 H 0.275 0.725 25 H 0.398 0.602 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.414 0.586 31 H 0.135 0.865 32 H 0.154 0.846 33 H 0.417 0.583 34 H 0.157 0.843 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.906 -23.093 -0.790 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.610 4.610 8 H 0.107 0.893 9 C 0.344 3.656 10 O -0.517 6.517 11 N -0.410 5.410 12 C 0.004 3.996 13 C 0.003 3.997 14 N -0.364 5.364 15 C 0.348 3.652 16 O -0.460 6.460 17 C -0.167 4.167 18 C -0.070 4.070 19 C -0.175 4.175 20 C 0.092 3.908 21 O -0.321 6.321 22 C -0.174 4.174 23 C -0.083 4.083 24 H 0.085 0.915 25 H 0.232 0.768 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.252 0.748 31 H 0.152 0.848 32 H 0.171 0.829 33 H 0.279 0.721 34 H 0.174 0.826 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.731 -22.892 -1.362 22.944 hybrid contribution 0.112 0.644 0.469 0.805 sum 0.843 -22.248 -0.893 22.281 Atomic orbital electron populations 1.70179 1.09502 1.29039 1.36284 1.26970 0.95531 1.04963 0.91195 0.84995 0.78917 0.75157 0.79157 1.18831 1.19735 1.17208 1.21429 0.95318 0.90199 1.54026 0.89338 1.18582 0.86784 0.84076 0.76202 1.90553 1.16066 1.87455 1.57638 1.45670 1.09539 1.05225 1.80567 1.20972 0.94404 0.83680 1.00558 1.21264 0.94177 0.81558 1.02711 1.45674 1.11265 1.05636 1.73791 1.18547 0.86839 0.84319 0.75542 1.90760 1.15062 1.87769 1.52362 1.19891 0.94542 0.92783 1.09461 1.21221 1.00914 0.90725 0.94166 1.21588 0.93872 0.99129 1.02932 1.18850 0.90036 0.86339 0.95579 1.84705 1.76354 1.33942 1.37080 1.21625 1.02043 0.91411 1.02294 1.21436 0.92065 0.99581 0.95204 0.91479 0.76844 0.93381 0.93267 0.90767 0.90880 0.74823 0.84750 0.82870 0.72150 0.82577 0.83226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.69 11.85 21.84 0.26 -49.43 16 2 C 0.03 1.58 5.49 85.30 0.47 2.05 16 3 Si 1.00 40.53 29.56 68.60 2.03 42.56 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 6 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 7 C -0.57 -32.10 9.53 24.83 0.24 -31.86 16 8 H 0.09 4.44 7.85 -2.92 -0.02 4.42 16 9 C 0.54 30.76 7.74 86.36 0.67 31.43 16 10 O -0.63 -41.37 15.05 -4.32 -0.06 -41.44 16 11 N -0.75 -32.87 5.55 -467.37 -2.59 -35.46 16 12 C 0.13 4.62 5.79 86.38 0.50 5.12 16 13 C 0.13 3.62 5.79 86.38 0.50 4.12 16 14 N -0.71 -17.22 5.51 -466.21 -2.57 -19.79 16 15 C 0.56 14.90 7.76 86.71 0.67 15.57 16 16 O -0.58 -19.65 16.34 -3.98 -0.07 -19.72 16 17 C -0.16 -3.42 5.88 -20.08 -0.12 -3.54 16 18 C -0.05 -0.99 9.59 22.51 0.22 -0.77 16 19 C -0.16 -2.32 9.97 22.33 0.22 -2.10 16 20 C 0.14 1.90 6.71 22.63 0.15 2.05 16 21 O -0.51 -5.44 13.49 -90.33 -1.22 -6.66 16 22 C -0.16 -2.09 9.97 22.32 0.22 -1.86 16 23 C -0.06 -1.01 9.53 22.50 0.21 -0.79 16 24 H 0.28 15.04 8.29 -92.70 -0.77 14.28 16 25 H 0.40 14.96 8.45 -92.71 -0.78 14.18 16 26 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.41 7.89 6.49 -92.71 -0.60 7.29 16 31 H 0.13 2.69 7.64 -2.92 -0.02 2.67 16 32 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.42 0.28 9.06 -74.06 -0.67 -0.39 16 34 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.15 1.75 6.39 -2.91 -0.02 1.73 16 Total: -1.00 -82.56 315.29 -1.16 -83.72 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -0.89 Total: 26.81 kcal Atomic # 6 Polarization: 15.45 SS G_CDS: 3.96 Total: 19.41 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -4.90 Total: -104.68 kcal Atomic # 8 Polarization: -66.47 SS G_CDS: -1.35 Total: -67.82 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -82.56 -1.16 -83.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274261815.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.593 kcal (2) G-P(sol) polarization free energy of solvation -82.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds