Wall clock time and date at job start Mon Mar 30 2020 23:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86806 * 119.99869 * 2 1 4 4 H 1.48503 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47084 * 299.99730 * 3 2 1 6 6 H 1.48497 * 109.47080 * 59.99904 * 3 2 1 7 7 C 1.40051 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99956 * 359.97438 * 7 2 1 10 10 O 1.21688 * 119.99954 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00399 * 180.02562 * 9 7 2 12 12 N 1.40101 * 120.00565 * 179.97438 * 11 9 7 13 13 C 1.34768 * 120.00153 * 180.02562 * 12 11 9 14 14 O 1.21285 * 120.00294 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99883 * 180.02562 * 13 12 11 16 16 O 1.42903 * 109.47122 * 180.02562 * 15 13 12 17 17 C 1.42893 * 113.99793 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 0.96998 * 119.99940 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00044 * 0.02562 * 11 9 7 26 26 H 0.97003 * 119.99391 * 0.02562 * 12 11 9 27 27 H 1.09005 * 109.47119 * 60.00082 * 15 13 12 28 28 H 1.08993 * 109.47044 * 300.00277 * 15 13 12 29 29 H 1.09005 * 109.47744 * 60.00256 * 17 16 15 30 30 H 1.09000 * 109.47353 * 299.99456 * 17 16 15 31 31 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 32 32 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 33 33 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 34 34 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 35 35 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3965 -1.2126 6 1 1.8819 2.3965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 7 1.2486 -4.8610 0.0000 13 6 1.9225 -6.0281 0.0005 14 8 3.1353 -6.0281 0.0010 15 6 1.1690 -7.3333 0.0005 16 8 2.0976 -8.4194 0.0017 17 6 1.4831 -9.7095 0.0012 18 6 2.5498 -10.7741 0.0020 19 6 3.0382 -11.2623 1.1995 20 6 4.0162 -12.2392 1.2001 21 6 4.5055 -12.7282 0.0033 22 6 4.0210 -12.2362 -1.1941 23 6 3.0396 -11.2626 -1.1948 24 1 -0.4850 0.8400 -0.0004 25 1 2.9190 -3.6477 -0.0002 26 1 0.2786 -4.8610 0.0000 27 1 0.5426 -7.3912 -0.8897 28 1 0.5420 -7.3908 0.8902 29 1 0.8639 -9.8168 -0.8894 30 1 0.8620 -9.8164 0.8906 31 1 2.6555 -10.8806 2.1346 32 1 4.3980 -12.6204 2.1357 33 1 5.2694 -13.4918 0.0039 34 1 4.4064 -12.6151 -2.1292 35 1 2.6575 -10.8817 -2.1304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274750229.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:23 Heat of formation + Delta-G solvation = -60.782136 kcal Electronic energy + Delta-G solvation = -19860.271149 eV Core-core repulsion = 16438.758091 eV Total energy + Delta-G solvation = -3421.513058 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.71005 -39.25523 -37.65463 -36.82550 -34.10191 -32.56654 -32.27266 -31.11002 -30.57390 -27.87366 -26.21519 -25.44083 -22.79704 -21.56140 -20.77634 -20.50041 -17.88316 -17.14558 -16.96047 -16.41419 -16.33234 -15.92410 -15.49375 -15.18617 -15.11982 -14.22751 -14.09947 -13.81371 -13.60424 -13.21732 -12.91266 -12.79400 -12.57076 -12.13611 -12.08107 -11.39545 -11.25081 -11.17440 -11.15926 -10.65803 -10.34399 -10.10604 -9.84994 -9.55943 -9.11922 -9.04726 -8.98195 -7.96385 -7.15430 -6.38538 -4.82942 1.03511 1.20353 2.62313 2.92578 3.07633 3.16013 3.21560 3.47636 3.97368 4.10015 4.40572 4.58461 4.58588 4.78252 4.82501 4.92668 5.00653 5.05843 5.14341 5.20439 5.31901 5.43317 5.60507 5.64804 5.74542 5.82554 6.22464 6.28677 6.38035 6.76291 6.87534 7.29064 7.31957 7.84823 7.93241 8.17822 8.80633 8.86269 9.21562 10.36860 10.54791 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.049502 B = 0.002509 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.502061 B =11156.641684 C =11412.353826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.087 3.913 3 Si 0.918 3.082 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.076 0.924 9 C 0.555 3.445 10 O -0.582 6.582 11 N -0.560 5.560 12 N -0.510 5.510 13 C 0.498 3.502 14 O -0.540 6.540 15 C 0.054 3.946 16 O -0.354 6.354 17 C 0.100 3.900 18 C -0.088 4.088 19 C -0.096 4.096 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.125 4.125 23 C -0.096 4.096 24 H 0.271 0.729 25 H 0.414 0.586 26 H 0.424 0.576 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.782 -21.559 0.004 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.134 4.134 3 Si 0.742 3.258 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.094 0.906 9 C 0.360 3.640 10 O -0.463 6.463 11 N -0.314 5.314 12 N -0.254 5.254 13 C 0.282 3.718 14 O -0.416 6.416 15 C -0.027 4.027 16 O -0.272 6.272 17 C 0.023 3.977 18 C -0.088 4.088 19 C -0.115 4.115 20 C -0.143 4.143 21 C -0.134 4.134 22 C -0.143 4.143 23 C -0.115 4.115 24 H 0.082 0.918 25 H 0.253 0.747 26 H 0.264 0.736 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.753 -21.420 0.004 21.596 hybrid contribution 0.091 0.711 0.001 0.717 sum 2.845 -20.709 0.005 20.904 Atomic orbital electron populations 1.70015 1.07151 1.27718 1.34289 1.25727 0.94770 1.00480 0.92409 0.86147 0.80513 0.80856 0.78332 1.18490 1.19983 1.19980 1.20730 0.94013 0.87849 1.54278 0.90556 1.18649 0.87627 0.80779 0.76936 1.90608 1.13778 1.85865 1.56060 1.45881 1.07724 0.94263 1.83501 1.44472 1.09098 0.98554 1.73248 1.20099 0.88576 0.83852 0.79304 1.90706 1.13428 1.86905 1.50555 1.22039 0.91866 0.85985 1.02820 1.88100 1.31456 1.12235 1.95438 1.21384 0.93231 0.81857 1.01202 1.19573 0.98730 0.96863 0.93674 1.21098 0.96456 0.96283 0.97621 1.21150 0.97374 0.97536 0.98228 1.21199 0.99647 0.99869 0.92662 1.21151 0.97354 0.97554 0.98224 1.21097 0.96419 0.96314 0.97628 0.91787 0.74690 0.73591 0.90048 0.90057 0.92107 0.92101 0.85827 0.85911 0.86069 0.85909 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.95 11.83 55.55 0.66 -21.29 16 2 C 0.09 2.34 5.50 -17.37 -0.10 2.24 16 3 Si 0.92 19.52 29.56 -169.99 -5.02 14.50 16 4 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.53 -14.58 9.54 -35.63 -0.34 -14.92 16 8 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 9 C 0.55 15.40 7.86 -12.99 -0.10 15.30 16 10 O -0.58 -17.80 14.86 5.20 0.08 -17.73 16 11 N -0.56 -13.18 6.25 30.19 0.19 -12.99 16 12 N -0.51 -10.11 6.26 31.22 0.20 -9.91 16 13 C 0.50 9.11 8.02 -10.99 -0.09 9.02 16 14 O -0.54 -12.03 16.34 -14.36 -0.23 -12.26 16 15 C 0.05 0.70 6.42 36.01 0.23 0.93 16 16 O -0.35 -5.11 9.86 -55.14 -0.54 -5.66 16 17 C 0.10 1.03 6.06 36.01 0.22 1.25 16 18 C -0.09 -0.97 5.51 -104.62 -0.58 -1.54 16 19 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 20 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 21 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 23 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 24 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 25 H 0.41 9.37 7.98 -182.59 -1.46 7.91 16 26 H 0.42 7.78 8.00 -182.59 -1.46 6.32 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 319.60 15.07 4.82 4.82 Total: -1.00 -36.28 319.60 -8.85 -45.13 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -6.26 Total: 10.33 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -2.71 Total: 5.07 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 1.04 Total: -44.19 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.70 Total: -35.65 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.28 -8.85 -45.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274750229.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.656 kcal (2) G-P(sol) polarization free energy of solvation -36.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds