Wall clock time and date at job start Mon Mar 30 2020 23:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86806 * 119.99869 * 2 1 4 4 H 1.48503 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47084 * 299.99730 * 3 2 1 6 6 H 1.48497 * 109.47080 * 59.99904 * 3 2 1 7 7 C 1.40051 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00090 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99956 * 359.97438 * 7 2 1 10 10 O 1.21688 * 119.99954 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00399 * 180.02562 * 9 7 2 12 12 N 1.40101 * 120.00565 * 179.97438 * 11 9 7 13 13 C 1.34768 * 120.00153 * 180.02562 * 12 11 9 14 14 O 1.21285 * 120.00294 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99883 * 180.02562 * 13 12 11 16 16 O 1.42903 * 109.47122 * 180.02562 * 15 13 12 17 17 C 1.42893 * 113.99793 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 0.96998 * 119.99940 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00044 * 0.02562 * 11 9 7 26 26 H 0.97003 * 119.99391 * 0.02562 * 12 11 9 27 27 H 1.09005 * 109.47119 * 60.00082 * 15 13 12 28 28 H 1.08993 * 109.47044 * 300.00277 * 15 13 12 29 29 H 1.09005 * 109.47744 * 60.00256 * 17 16 15 30 30 H 1.09000 * 109.47353 * 299.99456 * 17 16 15 31 31 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 32 32 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 33 33 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 34 34 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 35 35 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 -0.0006 5 1 1.8819 2.3965 -1.2126 6 1 1.8819 2.3965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 7 1.2486 -4.8610 0.0000 13 6 1.9225 -6.0281 0.0005 14 8 3.1353 -6.0281 0.0010 15 6 1.1690 -7.3333 0.0005 16 8 2.0976 -8.4194 0.0017 17 6 1.4831 -9.7095 0.0012 18 6 2.5498 -10.7741 0.0020 19 6 3.0382 -11.2623 1.1995 20 6 4.0162 -12.2392 1.2001 21 6 4.5055 -12.7282 0.0033 22 6 4.0210 -12.2362 -1.1941 23 6 3.0396 -11.2626 -1.1948 24 1 -0.4850 0.8400 -0.0004 25 1 2.9190 -3.6477 -0.0002 26 1 0.2786 -4.8610 0.0000 27 1 0.5426 -7.3912 -0.8897 28 1 0.5420 -7.3908 0.8902 29 1 0.8639 -9.8168 -0.8894 30 1 0.8620 -9.8164 0.8906 31 1 2.6555 -10.8806 2.1346 32 1 4.3980 -12.6204 2.1357 33 1 5.2694 -13.4918 0.0039 34 1 4.4064 -12.6151 -2.1292 35 1 2.6575 -10.8817 -2.1304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274750229.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:22 Heat of formation + Delta-G solvation = -86.877494 kcal Electronic energy + Delta-G solvation = -19861.402729 eV Core-core repulsion = 16438.758091 eV Total energy + Delta-G solvation = -3422.644638 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02580 -40.22754 -39.24858 -38.22593 -35.93148 -34.63778 -33.09782 -32.25296 -31.79233 -29.23751 -27.87634 -26.47156 -23.48630 -22.57033 -22.32878 -22.16774 -19.54563 -18.57218 -18.23307 -17.64519 -17.39475 -17.23813 -17.07046 -16.22253 -16.19858 -15.71159 -15.34542 -15.34336 -14.63550 -14.58323 -14.26636 -14.15909 -13.65335 -13.29149 -13.11868 -12.96261 -12.84187 -12.74627 -12.00444 -11.95998 -11.91669 -11.87670 -11.10455 -10.98019 -10.74028 -10.13263 -9.82292 -9.76903 -9.02467 -8.40751 -6.96087 0.30234 0.49943 1.14375 1.38270 1.44478 1.49751 1.61718 2.25960 2.37727 2.59954 3.09137 3.45029 3.49607 3.92019 3.92611 3.97806 4.15118 4.21066 4.24701 4.29169 4.37912 4.44119 4.64646 4.76973 5.07664 5.15274 5.26133 5.45158 5.54144 5.60423 5.66099 5.90311 6.03237 6.10201 6.17899 6.37334 6.76266 7.21561 7.24538 8.30679 8.54505 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.049502 B = 0.002509 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.502061 B =11156.641684 C =11412.353826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.033 3.967 3 Si 1.004 2.996 4 H -0.250 1.250 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.560 4.560 8 H 0.091 0.909 9 C 0.543 3.457 10 O -0.619 6.619 11 N -0.560 5.560 12 N -0.510 5.510 13 C 0.499 3.501 14 O -0.583 6.583 15 C 0.063 3.937 16 O -0.389 6.389 17 C 0.097 3.903 18 C -0.111 4.111 19 C -0.114 4.114 20 C -0.134 4.134 21 C -0.121 4.121 22 C -0.134 4.134 23 C -0.114 4.114 24 H 0.280 0.720 25 H 0.417 0.583 26 H 0.430 0.570 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -22.134 0.005 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.183 4.183 3 Si 0.823 3.177 4 H -0.173 1.173 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.598 4.598 8 H 0.109 0.891 9 C 0.349 3.651 10 O -0.505 6.505 11 N -0.312 5.312 12 N -0.256 5.256 13 C 0.286 3.714 14 O -0.461 6.461 15 C -0.017 4.017 16 O -0.308 6.308 17 C 0.022 3.978 18 C -0.111 4.111 19 C -0.132 4.132 20 C -0.152 4.152 21 C -0.139 4.139 22 C -0.152 4.152 23 C -0.132 4.132 24 H 0.090 0.910 25 H 0.257 0.743 26 H 0.272 0.728 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.149 0.851 32 H 0.160 0.840 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.321 -22.050 0.005 22.299 hybrid contribution -0.045 0.724 0.001 0.726 sum 3.277 -21.326 0.006 21.576 Atomic orbital electron populations 1.70134 1.09341 1.29500 1.35073 1.26945 0.95670 1.04685 0.91015 0.84869 0.79161 0.74913 0.78774 1.17308 1.19036 1.19028 1.21259 0.94994 0.88696 1.54824 0.89137 1.18872 0.87315 0.82138 0.76807 1.90562 1.15185 1.86787 1.57918 1.45450 1.07850 0.95434 1.82457 1.44672 1.09355 0.97584 1.73958 1.21224 0.88354 0.84819 0.77013 1.90682 1.15632 1.87572 1.52243 1.22098 0.90937 0.82608 1.06069 1.88045 1.33178 1.13775 1.95847 1.21596 0.93324 0.79796 1.03098 1.19822 0.99609 0.97520 0.94193 1.21347 0.97063 0.96897 0.97876 1.21478 0.97041 0.97228 0.99408 1.21559 0.99861 1.00104 0.92377 1.21479 0.97027 0.97248 0.99404 1.21345 0.97026 0.96925 0.97884 0.91000 0.74320 0.72814 0.86611 0.86622 0.90158 0.90150 0.85135 0.83994 0.83729 0.83994 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.25 11.83 21.84 0.26 -47.00 16 2 C 0.03 1.80 5.50 85.31 0.47 2.27 16 3 Si 1.00 39.57 29.56 68.60 2.03 41.59 16 4 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 7 C -0.56 -31.05 9.54 24.83 0.24 -30.82 16 8 H 0.09 4.58 7.85 -2.91 -0.02 4.55 16 9 C 0.54 30.77 7.86 86.36 0.68 31.45 16 10 O -0.62 -38.86 14.86 -4.31 -0.06 -38.93 16 11 N -0.56 -26.80 6.25 -176.63 -1.10 -27.90 16 12 N -0.51 -20.17 6.26 -173.53 -1.09 -21.26 16 13 C 0.50 17.95 8.02 87.66 0.70 18.65 16 14 O -0.58 -26.11 16.34 15.99 0.26 -25.85 16 15 C 0.06 1.49 6.42 71.24 0.46 1.95 16 16 O -0.39 -10.66 9.86 -129.94 -1.28 -11.95 16 17 C 0.10 1.83 6.06 71.24 0.43 2.26 16 18 C -0.11 -2.33 5.51 -19.86 -0.11 -2.44 16 19 C -0.11 -2.23 9.70 22.27 0.22 -2.01 16 20 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 21 C -0.12 -1.92 10.05 22.27 0.22 -1.69 16 22 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 23 C -0.11 -2.23 9.70 22.27 0.22 -2.01 16 24 H 0.28 14.60 8.29 -92.71 -0.77 13.83 16 25 H 0.42 19.25 7.98 -213.32 -1.70 17.55 16 26 H 0.43 15.70 8.00 -213.32 -1.71 14.00 16 27 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 1.15 8.08 -2.38 -0.02 1.13 16 30 H 0.08 1.15 8.09 -2.39 -0.02 1.13 16 31 H 0.13 2.22 8.06 -2.91 -0.02 2.19 16 32 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.13 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -80.31 319.60 0.71 -79.60 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: -2.27 Total: 38.18 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 3.97 Total: 13.51 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -1.93 Total: -96.15 kcal Atomic # 8 Polarization: -75.64 SS G_CDS: -1.08 Total: -76.72 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.59 kcal Total: -80.31 0.71 -79.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274750229.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.281 kcal (2) G-P(sol) polarization free energy of solvation -80.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds