Wall clock time and date at job start Mon Mar 30 2020 23:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48501 * 109.46793 * 240.00118 * 3 2 1 5 5 H 1.48494 * 109.47228 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47108 * 120.00233 * 3 2 1 7 7 C 1.37871 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99801 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99496 * 179.97438 * 11 10 9 14 14 N 1.40109 * 119.99481 * 180.02562 * 13 11 10 15 15 C 1.34777 * 119.99659 * 180.27982 * 14 13 11 16 16 O 1.21583 * 120.00270 * 359.71851 * 15 14 13 17 17 C 1.47532 * 119.99530 * 179.72162 * 15 14 13 18 18 C 1.39709 * 120.19724 * 0.02562 * 17 15 14 19 19 C 1.37780 * 119.91240 * 179.97438 * 18 17 15 20 20 C 1.38554 * 120.30076 * 359.97438 * 19 18 17 21 21 C 1.38051 * 120.38730 * 0.02692 * 20 19 18 22 22 C 1.38711 * 120.08719 * 359.69230 * 21 20 19 23 23 O 1.35652 * 120.15463 * 180.29911 * 22 21 20 24 24 H 0.97004 * 120.00751 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47174 * 60.00647 * 9 7 2 26 26 H 1.08998 * 109.47585 * 299.99945 * 9 7 2 27 27 H 1.09000 * 109.46887 * 59.99628 * 10 9 7 28 28 H 1.09007 * 109.46700 * 300.00171 * 10 9 7 29 29 H 0.97000 * 120.00718 * 0.02562 * 13 11 10 30 30 H 0.97001 * 119.99794 * 359.97438 * 14 13 11 31 31 H 1.08004 * 120.03966 * 359.95062 * 18 17 15 32 32 H 1.07999 * 119.85270 * 179.97438 * 19 18 17 33 33 H 1.07998 * 119.80468 * 179.97438 * 20 19 18 34 34 H 1.08009 * 119.95840 * 179.97438 * 21 20 19 35 35 H 0.96700 * 114.00476 * 270.26258 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4919 -4.9672 -0.0025 12 8 0.2792 -4.9672 -0.0024 13 7 2.1659 -6.1343 -0.0041 14 7 1.4654 -7.3477 -0.0053 15 6 2.1394 -8.5148 -0.0012 16 8 3.3553 -8.5148 -0.0018 17 6 1.4018 -9.7925 0.0038 18 6 0.0047 -9.7973 0.0038 19 6 -0.6783 -10.9939 0.0080 20 6 0.0142 -12.1940 0.0116 21 6 1.3947 -12.2037 0.0116 22 6 2.0985 -11.0085 0.0016 23 8 3.4549 -11.0164 -0.0046 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6248 -2.5572 0.8896 27 1 2.8727 -3.6046 0.8877 28 1 2.8714 -3.6038 -0.8923 29 1 3.1359 -6.1343 -0.0046 30 1 0.4954 -7.3477 -0.0045 31 1 -0.5392 -8.8642 0.0010 32 1 -1.7582 -10.9965 0.0084 33 1 -0.5292 -13.1273 0.0153 34 1 1.9274 -13.1432 0.0148 35 1 3.8523 -11.0177 0.8770 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290883137.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:50 Heat of formation + Delta-G solvation = -61.303466 kcal Electronic energy + Delta-G solvation = -20223.242348 eV Core-core repulsion = 16801.706683 eV Total energy + Delta-G solvation = -3421.535665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.81652 -39.56453 -38.33521 -37.02243 -35.16496 -33.54644 -32.50514 -31.27934 -30.26820 -29.84783 -25.81573 -24.26380 -22.94752 -21.95354 -21.36749 -20.06892 -18.74281 -17.89400 -17.65807 -16.72184 -16.06123 -15.89135 -15.64436 -15.42424 -15.04671 -14.73295 -14.47934 -14.36912 -13.97489 -13.43597 -12.81735 -12.63185 -12.52759 -12.24500 -12.10332 -11.25522 -11.14074 -11.09280 -10.92670 -10.66561 -10.18327 -10.03863 -9.80492 -9.51346 -9.41734 -9.15663 -9.11507 -8.37080 -8.21436 -6.00157 -4.04976 0.38337 0.82161 1.91170 2.49979 3.02149 3.33328 3.37316 3.38041 3.39808 3.83626 3.98432 4.36922 4.42145 4.50042 4.58175 4.89335 4.92602 5.24666 5.35129 5.37961 5.40435 5.74823 5.84425 5.96141 6.10138 6.11220 6.27292 6.66648 6.76363 6.88922 7.37536 7.66762 7.69551 7.77370 7.93284 8.00676 8.32487 8.60977 9.02499 9.58961 11.10712 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.045082 B = 0.002797 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.938841 B =10008.176945 C =10606.133109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.119 4.119 11 C 0.513 3.487 12 O -0.534 6.534 13 N -0.534 5.534 14 N -0.520 5.520 15 C 0.555 3.445 16 O -0.527 6.527 17 C -0.158 4.158 18 C -0.070 4.070 19 C -0.136 4.136 20 C -0.076 4.076 21 C -0.157 4.157 22 C 0.172 3.828 23 O -0.478 6.478 24 H 0.262 0.738 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.429 0.571 30 H 0.428 0.572 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 -25.508 1.708 25.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.160 4.160 11 C 0.302 3.698 12 O -0.408 6.408 13 N -0.286 5.286 14 N -0.267 5.267 15 C 0.342 3.658 16 O -0.403 6.403 17 C -0.163 4.163 18 C -0.089 4.089 19 C -0.154 4.154 20 C -0.094 4.094 21 C -0.176 4.176 22 C 0.125 3.875 23 O -0.289 6.289 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.271 0.729 30 H 0.271 0.729 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.155 0.845 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 1.179 -25.339 1.104 25.390 hybrid contribution 0.437 0.881 0.459 1.085 sum 1.617 -24.457 1.562 24.560 Atomic orbital electron populations 1.69981 1.06075 1.26821 1.49944 1.25016 0.94845 0.99283 0.95173 0.86620 0.79522 0.82999 0.78612 1.20190 1.21282 1.20204 1.21152 0.92998 0.90816 1.51789 0.92460 1.18936 0.93090 0.89062 0.98862 1.21910 1.00922 0.89805 1.03382 1.22123 0.89140 0.83990 0.74594 1.90683 1.14178 1.86910 1.49016 1.45556 1.08945 0.95652 1.78427 1.44754 1.09133 0.97494 1.75303 1.18077 0.87536 0.82267 0.77876 1.90819 1.12635 1.86867 1.50022 1.20167 0.93985 0.92571 1.09559 1.21355 0.92294 0.99320 0.95916 1.21147 1.00726 0.91870 1.01619 1.21278 0.93658 0.98606 0.95884 1.21475 0.94698 0.97755 1.03662 1.18454 0.83768 0.90440 0.94789 1.84754 1.14464 1.96022 1.33631 0.92825 0.95603 0.95602 0.89433 0.89421 0.72874 0.72915 0.84925 0.84787 0.84951 0.84538 0.74509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.12 -2.31 5.64 -27.88 -0.16 -2.47 16 11 C 0.51 9.57 7.95 -10.99 -0.09 9.48 16 12 O -0.53 -11.78 15.82 5.56 0.09 -11.69 16 13 N -0.53 -8.21 6.26 31.22 0.20 -8.01 16 14 N -0.52 -7.26 6.21 30.46 0.19 -7.07 16 15 C 0.56 7.59 7.88 -12.47 -0.10 7.49 16 16 O -0.53 -8.46 15.00 -16.59 -0.25 -8.71 16 17 C -0.16 -1.73 5.89 -104.84 -0.62 -2.35 16 18 C -0.07 -0.61 9.53 -39.20 -0.37 -0.98 16 19 C -0.14 -0.92 10.02 -39.63 -0.40 -1.32 16 20 C -0.08 -0.47 10.03 -39.53 -0.40 -0.87 16 21 C -0.16 -1.17 9.98 -39.48 -0.39 -1.56 16 22 C 0.17 1.73 6.72 -38.69 -0.26 1.47 16 23 O -0.48 -5.05 11.58 -40.54 -0.47 -5.52 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 27 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 28 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.43 5.92 8.00 -182.59 -1.46 4.46 16 30 H 0.43 5.50 6.03 -182.59 -1.10 4.40 16 31 H 0.13 1.00 6.40 -52.48 -0.34 0.66 16 32 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 34 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 35 H 0.40 2.63 9.06 45.56 0.41 3.05 16 LS Contribution 313.68 15.07 4.73 4.73 Total: -1.00 -36.03 313.68 -8.10 -44.12 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -4.98 Total: 5.64 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -3.31 Total: -3.65 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 1.12 Total: -41.33 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.63 Total: -25.92 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.03 -8.10 -44.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290883137.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.179 kcal (2) G-P(sol) polarization free energy of solvation -36.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds