Wall clock time and date at job start Tue Mar 31 2020 00:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38141 * 119.96397 * 2 1 4 4 C 1.38847 * 119.92729 * 179.97438 * 3 2 1 5 5 N 1.39924 * 120.07125 * 180.29931 * 4 3 2 6 6 C 1.34777 * 120.00393 * 215.65710 * 5 4 3 7 7 O 1.21285 * 119.99772 * 355.04475 * 6 5 4 8 8 C 1.50698 * 120.00127 * 175.04130 * 6 5 4 9 9 C 1.52996 * 109.47022 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47207 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99995 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00371 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00057 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99571 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46797 * 90.00620 * 14 12 10 16 16 H 1.48500 * 109.47234 * 210.00315 * 14 12 10 17 17 H 1.48491 * 109.47469 * 330.00769 * 14 12 10 18 18 C 1.38890 * 119.86207 * 0.02577 * 4 3 2 19 19 C 1.38098 * 119.92967 * 359.97438 * 18 4 3 20 20 C 1.38257 * 119.96782 * 179.97438 * 2 1 3 21 21 N 1.48020 * 119.92469 * 0.02876 * 20 2 1 22 22 O 1.21807 * 119.99972 * 173.48676 * 21 20 2 23 23 O 1.21799 * 120.00578 * 353.47298 * 21 20 2 24 24 H 1.09003 * 109.46799 * 263.33492 * 1 2 3 25 25 H 1.08997 * 109.47083 * 23.33267 * 1 2 3 26 26 H 1.08998 * 109.47131 * 143.33965 * 1 2 3 27 27 H 1.07994 * 120.03371 * 0.02923 * 3 2 1 28 28 H 0.97001 * 120.00005 * 35.65419 * 5 4 3 29 29 H 1.08999 * 109.47338 * 300.00252 * 8 6 5 30 30 H 1.08999 * 109.46773 * 60.00369 * 8 6 5 31 31 H 1.08999 * 109.47272 * 300.00295 * 9 8 6 32 32 H 1.08999 * 109.47042 * 60.00537 * 9 8 6 33 33 H 0.97004 * 119.99453 * 180.02562 * 13 12 10 34 34 H 1.07997 * 120.03929 * 180.02562 * 18 4 3 35 35 H 1.07996 * 119.96867 * 179.97438 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1968 0.0000 4 6 3.5854 1.1959 0.0005 5 7 4.2873 2.4063 0.0069 6 6 5.4461 2.5170 -0.6725 7 8 5.9265 1.5443 -1.2146 8 6 6.1447 3.8495 -0.7586 9 6 7.4274 3.7007 -1.5792 10 6 8.1263 5.0330 -1.6648 11 1 7.6987 5.8992 -1.1819 12 6 9.3118 5.1463 -2.3598 13 7 9.9221 6.3089 -2.4340 14 14 10.0518 3.6480 -3.1945 15 1 9.5351 3.5495 -4.5833 16 1 11.5308 3.7781 -3.2248 17 1 9.6778 2.4253 -2.4394 18 6 4.2762 -0.0091 0.0005 19 6 3.5806 -1.2020 0.0005 20 6 2.1976 -1.1977 0.0005 21 7 1.4551 -2.4782 0.0005 22 8 2.0563 -3.5309 -0.1187 23 8 0.2430 -2.4795 0.1198 24 1 -0.3633 -0.1193 1.0208 25 1 -0.3633 0.9436 -0.4070 26 1 -0.3633 -0.8244 -0.6136 27 1 1.6569 2.1320 0.0005 28 1 3.9399 3.1658 0.5002 29 1 5.4874 4.5741 -1.2393 30 1 6.3938 4.1946 0.2448 31 1 8.0845 2.9763 -1.0982 32 1 7.1786 3.3554 -2.5827 33 1 10.7559 6.3886 -2.9232 34 1 5.3562 -0.0131 0.0014 35 1 4.1171 -2.1393 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291655599.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:32 Heat of formation + Delta-G solvation = -40.527865 kcal Electronic energy + Delta-G solvation = -20506.136711 eV Core-core repulsion = 17085.501944 eV Total energy + Delta-G solvation = -3420.634767 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.32432 -41.82675 -39.98298 -37.76017 -36.35867 -35.59108 -33.91634 -33.38498 -31.89335 -28.92959 -28.25739 -26.50495 -24.15874 -23.82537 -22.56963 -21.34870 -20.14022 -19.74367 -19.29082 -18.69313 -18.55993 -17.78709 -16.97876 -16.37504 -16.15958 -15.77115 -15.37347 -15.05021 -14.71883 -14.69106 -14.38694 -14.24804 -13.80586 -13.46223 -13.38461 -12.93913 -12.73036 -12.50072 -12.27755 -12.16276 -12.00572 -11.82980 -11.79149 -11.73108 -11.41531 -10.96981 -10.79144 -10.19519 -9.74827 -8.32503 -6.35449 -1.24296 -0.09616 0.19847 0.40280 1.32495 1.35926 1.39200 1.48132 1.76915 2.24055 2.33272 3.03984 3.31180 3.34618 3.60144 3.76518 3.85154 4.12653 4.28385 4.35905 4.45618 4.47741 4.60950 4.72010 4.87788 4.90392 4.97740 5.04888 5.07875 5.29702 5.35954 5.41954 5.57968 5.60143 6.18147 6.25489 6.55280 6.71935 6.96689 7.30306 8.82977 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037086 B = 0.003219 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.830530 B = 8695.507903 C = 9278.368127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.009 3.991 3 C -0.139 4.139 4 C 0.210 3.790 5 N -0.659 5.659 6 C 0.520 3.480 7 O -0.552 6.552 8 C -0.113 4.113 9 C 0.001 3.999 10 C -0.528 4.528 11 H 0.054 0.946 12 C 0.013 3.987 13 N -0.944 5.944 14 Si 0.936 3.064 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.258 1.258 18 C -0.147 4.147 19 C -0.034 4.034 20 C -0.089 4.089 21 N 0.039 4.961 22 O -0.220 6.220 23 O -0.150 6.150 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.190 0.810 28 H 0.439 0.561 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.013 0.987 32 H 0.010 0.990 33 H 0.267 0.733 34 H 0.145 0.855 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.348 -9.812 8.125 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.007 3.993 3 C -0.159 4.159 4 C 0.113 3.887 5 N -0.306 5.306 6 C 0.310 3.690 7 O -0.428 6.428 8 C -0.153 4.153 9 C -0.037 4.037 10 C -0.566 4.566 11 H 0.072 0.928 12 C -0.184 4.184 13 N -0.584 5.584 14 Si 0.760 3.240 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.182 1.182 18 C -0.168 4.168 19 C -0.054 4.054 20 C -0.174 4.174 21 N 0.550 4.450 22 O -0.422 6.422 23 O -0.369 6.369 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.104 0.896 27 H 0.207 0.793 28 H 0.280 0.720 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.162 0.838 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.381 -9.796 7.644 23.022 hybrid contribution 0.746 -0.565 -0.363 1.004 sum -18.634 -10.361 7.281 22.530 Atomic orbital electron populations 1.21379 0.86525 1.05640 1.05148 1.19955 0.99107 0.89212 0.91073 1.21170 0.90887 0.99168 1.04719 1.18329 0.91812 0.86357 0.92214 1.43685 1.22889 1.13183 1.50868 1.21606 0.79633 0.91876 0.75836 1.90692 1.65035 1.40841 1.46275 1.21546 0.97280 0.92255 1.04191 1.19269 0.93591 0.95219 0.95626 1.21424 1.06756 0.95529 1.32866 0.92804 1.25790 0.97567 0.98249 0.96827 1.70020 1.18682 1.25825 1.43906 0.85872 0.77609 0.80877 0.79597 1.19601 1.20783 1.18243 1.21296 1.01846 0.90307 1.03340 1.20929 0.90896 1.00527 0.93025 1.21089 0.92479 0.82967 1.20910 1.43752 1.01043 1.03201 0.97040 1.94549 1.70418 1.20889 1.56302 1.94412 0.96700 1.93919 1.51902 0.88151 0.87893 0.89594 0.79254 0.71995 0.86782 0.86748 0.96847 0.97138 0.92436 0.83768 0.82737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 8.68 71.24 0.62 -0.84 16 2 C 0.01 0.14 5.88 -19.88 -0.12 0.03 16 3 C -0.14 -1.81 9.59 22.39 0.21 -1.60 16 4 C 0.21 3.93 6.28 38.15 0.24 4.17 16 5 N -0.66 -11.60 5.33 -303.51 -1.62 -13.22 16 6 C 0.52 14.45 7.67 87.66 0.67 15.12 16 7 O -0.55 -20.12 13.46 -3.05 -0.04 -20.16 16 8 C -0.11 -3.45 5.64 29.85 0.17 -3.28 16 9 C 0.00 0.04 3.33 29.85 0.10 0.14 16 10 C -0.53 -28.32 9.66 25.60 0.25 -28.07 16 11 H 0.05 3.03 7.99 -2.91 -0.02 3.01 16 12 C 0.01 0.76 5.47 84.66 0.46 1.23 16 13 N -0.94 -57.09 13.96 21.45 0.30 -56.79 16 14 Si 0.94 44.65 27.47 68.60 1.88 46.53 16 15 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.26 -12.07 6.54 99.48 0.65 -11.42 16 18 C -0.15 -3.39 8.70 22.39 0.19 -3.20 16 19 C -0.03 -0.76 9.55 22.25 0.21 -0.54 16 20 C -0.09 -1.95 6.83 36.39 0.25 -1.70 16 21 N 0.04 0.99 4.45 -46.41 -0.21 0.78 16 22 O -0.22 -6.35 18.46 18.88 0.35 -6.00 16 23 O -0.15 -3.60 15.35 18.89 0.29 -3.31 16 24 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.10 0.59 8.04 -2.39 -0.02 0.57 16 26 H 0.09 1.25 5.84 -2.39 -0.01 1.23 16 27 H 0.19 0.95 8.06 -2.91 -0.02 0.92 16 28 H 0.44 3.96 8.82 -92.71 -0.82 3.14 16 29 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.01 0.62 7.16 -2.39 -0.02 0.60 16 32 H 0.01 0.48 7.53 -2.39 -0.02 0.46 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.14 3.90 6.27 -2.91 -0.02 3.88 16 35 H 0.15 3.28 7.62 -2.91 -0.02 3.25 16 Total: -1.00 -72.51 306.59 4.48 -68.03 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: 0.26 Total: 2.68 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 3.26 Total: -18.55 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -1.53 Total: -69.23 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: 0.60 Total: -29.47 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.53 kcal Total: -72.51 4.48 -68.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291655599.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.500 kcal (2) G-P(sol) polarization free energy of solvation -72.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds