Wall clock time and date at job start Tue Mar 31 2020 00:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38299 * 119.92971 * 2 1 4 4 C 1.38092 * 120.07079 * 179.72488 * 3 2 1 5 5 C 1.38890 * 119.92465 * 0.56582 * 4 3 2 6 6 N 1.39932 * 120.06786 * 179.72751 * 5 4 3 7 7 C 1.34768 * 119.99945 * 215.37947 * 6 5 4 8 8 O 1.21294 * 120.00275 * 354.69664 * 7 6 5 9 9 C 1.50703 * 120.00140 * 174.70141 * 7 6 5 10 10 C 1.52998 * 109.47187 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47173 * 179.97438 * 10 9 7 12 12 H 1.08007 * 119.99843 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00290 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99853 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00085 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46697 * 60.00534 * 15 13 11 17 17 H 1.48497 * 109.46940 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47006 * 300.00246 * 15 13 11 19 19 C 1.38849 * 119.86369 * 359.70635 * 5 4 3 20 20 C 1.38139 * 119.92657 * 359.97438 * 19 5 4 21 21 N 1.48010 * 119.96246 * 180.02562 * 20 19 5 22 22 O 1.21802 * 120.00427 * 2.66073 * 21 20 19 23 23 O 1.21800 * 119.99860 * 182.66426 * 21 20 19 24 24 H 1.08999 * 109.47248 * 262.05752 * 1 2 3 25 25 H 1.09001 * 109.47299 * 142.05326 * 1 2 3 26 26 H 1.09006 * 109.47505 * 22.05649 * 1 2 3 27 27 H 1.08008 * 119.96174 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.03458 * 180.27886 * 4 3 2 29 29 H 0.96996 * 119.99832 * 35.37638 * 6 5 4 30 30 H 1.08999 * 109.46721 * 299.99819 * 9 7 6 31 31 H 1.09002 * 109.46881 * 59.99578 * 9 7 6 32 32 H 1.08999 * 109.47194 * 299.99593 * 10 9 7 33 33 H 1.09002 * 109.47503 * 60.00022 * 10 9 7 34 34 H 0.96995 * 119.99740 * 179.97438 * 14 13 11 35 35 H 1.07996 * 120.03671 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2020 0.0057 5 6 4.2738 0.0000 -0.0004 6 7 5.6731 0.0000 -0.0003 7 6 6.3470 -0.9482 -0.6809 8 8 5.7444 -1.8563 -1.2133 9 6 7.8491 -0.8802 -0.7805 10 6 8.3602 -2.0670 -1.5998 11 6 9.8623 -1.9987 -1.6998 12 1 10.3989 -1.1899 -1.2260 13 6 10.5518 -2.9692 -2.3953 14 7 9.8985 -3.9543 -2.9718 15 14 12.4138 -2.8841 -2.5199 16 1 13.0036 -2.9315 -1.1579 17 1 12.9098 -4.0360 -3.3150 18 1 12.8078 -1.6169 -3.1863 19 6 3.5781 -1.2016 -0.0061 20 6 2.1967 -1.1982 -0.0051 21 7 1.4543 -2.4787 -0.0106 22 8 2.0604 -3.5343 0.0330 23 8 0.2373 -2.4768 -0.0588 24 1 -0.3634 -0.1420 1.0178 25 1 -0.3634 -0.8104 -0.6319 26 1 -0.3634 0.9525 -0.3859 27 1 1.6552 2.1329 -0.0004 28 1 4.1162 2.1382 0.0103 29 1 6.1581 0.6824 0.4895 30 1 8.1391 0.0504 -1.2683 31 1 8.2815 -0.9163 0.2195 32 1 8.0702 -2.9974 -1.1115 33 1 7.9279 -2.0313 -2.5997 34 1 10.3836 -4.6368 -3.4614 35 1 4.1164 -2.1379 -0.0104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291987463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:36 Heat of formation + Delta-G solvation = -18.935753 kcal Electronic energy + Delta-G solvation = -20700.392887 eV Core-core repulsion = 17280.694424 eV Total energy + Delta-G solvation = -3419.698463 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.25094 -40.61069 -38.84106 -36.63944 -35.23471 -33.63097 -32.10363 -32.07111 -30.92188 -27.68222 -26.36863 -25.39109 -23.12410 -22.53492 -21.51968 -20.04320 -19.23125 -18.57926 -17.54715 -17.22798 -16.66211 -16.07388 -15.88823 -15.70717 -14.86733 -14.52067 -14.23304 -14.12219 -13.53651 -13.07363 -12.90777 -12.55131 -12.39435 -12.28591 -12.15832 -11.32208 -11.30266 -11.08712 -10.98529 -10.78181 -10.69572 -10.45093 -10.10513 -9.88411 -9.73683 -9.41018 -9.20193 -8.47646 -8.38904 -6.03286 -4.09032 -0.21099 0.73648 1.27905 1.40137 2.71561 2.93875 3.19922 3.29712 3.35174 3.36354 4.17020 4.30423 4.40717 4.50048 4.62563 4.77612 5.07146 5.19946 5.31720 5.32563 5.38154 5.52386 5.71439 5.73476 5.86072 5.90832 5.99122 6.02831 6.39949 6.57481 6.66936 7.34065 7.63605 7.69839 7.71758 7.96128 8.20569 8.35848 8.98242 9.55246 11.07448 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030952 B = 0.003430 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.403417 B = 8160.604876 C = 8924.267049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.042 4.042 3 C -0.105 4.105 4 C -0.096 4.096 5 C 0.154 3.846 6 N -0.684 5.684 7 C 0.508 3.492 8 O -0.507 6.507 9 C -0.127 4.127 10 C 0.036 3.964 11 C -0.532 4.532 12 H 0.056 0.944 13 C 0.060 3.940 14 N -0.887 5.887 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.061 4.061 20 C -0.029 4.029 21 N 0.033 4.967 22 O -0.154 6.154 23 O -0.166 6.166 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.415 0.585 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.026 0.974 33 H 0.025 0.975 34 H 0.263 0.737 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.662 14.314 8.637 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.044 4.044 3 C -0.124 4.124 4 C -0.117 4.117 5 C 0.057 3.943 6 N -0.331 5.331 7 C 0.298 3.702 8 O -0.379 6.379 9 C -0.166 4.166 10 C -0.002 4.002 11 C -0.570 4.570 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.525 5.525 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.082 4.082 20 C -0.113 4.113 21 N 0.550 4.450 22 O -0.371 6.371 23 O -0.378 6.378 24 H 0.100 0.900 25 H 0.122 0.878 26 H 0.090 0.910 27 H 0.166 0.834 28 H 0.163 0.837 29 H 0.252 0.748 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.631 14.058 8.093 22.527 hybrid contribution 1.191 0.072 0.117 1.199 sum -14.441 14.130 8.210 21.808 Atomic orbital electron populations 1.21336 0.88667 1.04637 1.04382 1.19824 0.98015 0.90435 0.96122 1.20869 0.93306 0.97089 1.01139 1.21391 0.94540 0.97395 0.98358 1.17536 0.84620 0.92281 0.99829 1.43987 1.03015 1.33481 1.52632 1.22074 0.92134 0.80089 0.75880 1.90716 1.70110 1.32653 1.44426 1.21940 0.86324 1.04685 1.03697 1.18939 0.95226 0.90993 0.95035 1.21120 0.91665 1.10092 1.34154 0.92570 1.25025 0.98513 0.95334 0.95413 1.69977 1.35715 1.12738 1.34107 0.86629 0.85482 0.77550 0.78135 1.20193 1.21212 1.20233 1.21230 0.91049 1.01266 0.94650 1.20741 0.92045 0.83285 1.15243 1.43544 1.01018 1.02883 0.97530 1.94612 1.70192 1.19296 1.53021 1.94400 0.95973 1.93780 1.53635 0.89971 0.87816 0.91042 0.83420 0.83736 0.74821 0.89538 0.89519 0.95561 0.95685 0.92734 0.81099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 8.81 36.01 0.32 -0.81 16 2 C -0.04 -0.44 5.88 -104.59 -0.62 -1.05 16 3 C -0.10 -0.83 9.66 -39.61 -0.38 -1.21 16 4 C -0.10 -0.81 9.97 -39.39 -0.39 -1.21 16 5 C 0.15 1.87 6.30 -83.69 -0.53 1.35 16 6 N -0.68 -8.26 5.33 -9.86 -0.05 -8.31 16 7 C 0.51 8.76 7.68 -10.99 -0.08 8.67 16 8 O -0.51 -11.01 13.42 5.55 0.07 -10.94 16 9 C -0.13 -2.31 5.64 -27.88 -0.16 -2.47 16 10 C 0.04 0.91 4.26 -27.88 -0.12 0.79 16 11 C -0.53 -14.54 9.11 -34.44 -0.31 -14.86 16 12 H 0.06 1.43 7.74 -52.48 -0.41 1.03 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 15 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 19 C -0.06 -0.90 8.21 -39.39 -0.32 -1.22 16 20 C -0.03 -0.41 6.84 -79.98 -0.55 -0.95 16 21 N 0.03 0.52 4.45 33.95 0.15 0.67 16 22 O -0.15 -2.76 18.45 -29.46 -0.54 -3.30 16 23 O -0.17 -2.44 15.26 -29.46 -0.45 -2.89 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.10 1.03 5.61 -51.93 -0.29 0.74 16 26 H 0.07 0.42 8.02 -51.93 -0.42 0.00 16 27 H 0.15 0.67 8.05 -52.48 -0.42 0.24 16 28 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 29 H 0.42 3.31 8.82 -40.82 -0.36 2.95 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.17 3.04 5.78 -52.49 -0.30 2.74 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -34.28 309.90 -7.54 -41.82 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -3.87 Total: -0.38 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -3.24 Total: -11.37 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.83 Total: -33.77 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.92 Total: -17.13 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.28 -7.54 -41.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291987463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.886 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds