Wall clock time and date at job start Tue Mar 31 2020 00:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38299 * 119.92971 * 2 1 4 4 C 1.38092 * 120.07079 * 179.72488 * 3 2 1 5 5 C 1.38890 * 119.92465 * 0.56582 * 4 3 2 6 6 N 1.39932 * 120.06786 * 179.72751 * 5 4 3 7 7 C 1.34768 * 119.99945 * 215.37947 * 6 5 4 8 8 O 1.21294 * 120.00275 * 354.69664 * 7 6 5 9 9 C 1.50703 * 120.00140 * 174.70141 * 7 6 5 10 10 C 1.52998 * 109.47187 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47173 * 179.97438 * 10 9 7 12 12 H 1.08007 * 119.99843 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00290 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99853 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00085 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46697 * 60.00534 * 15 13 11 17 17 H 1.48497 * 109.46940 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47006 * 300.00246 * 15 13 11 19 19 C 1.38849 * 119.86369 * 359.70635 * 5 4 3 20 20 C 1.38139 * 119.92657 * 359.97438 * 19 5 4 21 21 N 1.48010 * 119.96246 * 180.02562 * 20 19 5 22 22 O 1.21802 * 120.00427 * 2.66073 * 21 20 19 23 23 O 1.21800 * 119.99860 * 182.66426 * 21 20 19 24 24 H 1.08999 * 109.47248 * 262.05752 * 1 2 3 25 25 H 1.09001 * 109.47299 * 142.05326 * 1 2 3 26 26 H 1.09006 * 109.47505 * 22.05649 * 1 2 3 27 27 H 1.08008 * 119.96174 * 359.97438 * 3 2 1 28 28 H 1.07997 * 120.03458 * 180.27886 * 4 3 2 29 29 H 0.96996 * 119.99832 * 35.37638 * 6 5 4 30 30 H 1.08999 * 109.46721 * 299.99819 * 9 7 6 31 31 H 1.09002 * 109.46881 * 59.99578 * 9 7 6 32 32 H 1.08999 * 109.47194 * 299.99593 * 10 9 7 33 33 H 1.09002 * 109.47503 * 60.00022 * 10 9 7 34 34 H 0.96995 * 119.99740 * 179.97438 * 14 13 11 35 35 H 1.07996 * 120.03671 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2020 0.0057 5 6 4.2738 0.0000 -0.0004 6 7 5.6731 0.0000 -0.0003 7 6 6.3470 -0.9482 -0.6809 8 8 5.7444 -1.8563 -1.2133 9 6 7.8491 -0.8802 -0.7805 10 6 8.3602 -2.0670 -1.5998 11 6 9.8623 -1.9987 -1.6998 12 1 10.3989 -1.1899 -1.2260 13 6 10.5518 -2.9692 -2.3953 14 7 9.8985 -3.9543 -2.9718 15 14 12.4138 -2.8841 -2.5199 16 1 13.0036 -2.9315 -1.1579 17 1 12.9098 -4.0360 -3.3150 18 1 12.8078 -1.6169 -3.1863 19 6 3.5781 -1.2016 -0.0061 20 6 2.1967 -1.1982 -0.0051 21 7 1.4543 -2.4787 -0.0106 22 8 2.0604 -3.5343 0.0330 23 8 0.2373 -2.4768 -0.0588 24 1 -0.3634 -0.1420 1.0178 25 1 -0.3634 -0.8104 -0.6319 26 1 -0.3634 0.9525 -0.3859 27 1 1.6552 2.1329 -0.0004 28 1 4.1162 2.1382 0.0103 29 1 6.1581 0.6824 0.4895 30 1 8.1391 0.0504 -1.2683 31 1 8.2815 -0.9163 0.2195 32 1 8.0702 -2.9974 -1.1115 33 1 7.9279 -2.0313 -2.5997 34 1 10.3836 -4.6368 -3.4614 35 1 4.1164 -2.1379 -0.0104 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291987463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:35 Heat of formation + Delta-G solvation = -42.335517 kcal Electronic energy + Delta-G solvation = -20701.407577 eV Core-core repulsion = 17280.694424 eV Total energy + Delta-G solvation = -3420.713153 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.41255 -41.75567 -39.96737 -37.84245 -36.39745 -35.61993 -33.43880 -32.96768 -32.43990 -28.79990 -27.86162 -26.68595 -24.27896 -23.83391 -22.81687 -21.42734 -20.33269 -19.78642 -18.90103 -18.73998 -17.77364 -17.59823 -16.99909 -16.76655 -16.46253 -16.08748 -15.29244 -14.95633 -14.83545 -14.35743 -14.22554 -13.79838 -13.56759 -13.34697 -13.24731 -13.05125 -12.79320 -12.54162 -12.51865 -12.35260 -11.95902 -11.80327 -11.69538 -11.52563 -11.35248 -10.92185 -10.58171 -10.55066 -9.44082 -8.19907 -6.34637 -1.27028 -0.16056 0.25018 0.35265 1.41474 1.44367 1.45981 1.53685 1.86137 2.28543 2.41927 3.13586 3.35540 3.43687 3.67146 3.80237 3.92945 3.99788 4.40608 4.44964 4.49592 4.50501 4.71540 4.74684 4.85998 5.01022 5.03374 5.07599 5.10394 5.37214 5.47347 5.57790 5.61720 5.82078 6.13193 6.30283 6.47363 6.83822 7.06626 7.36331 8.92518 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030952 B = 0.003430 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.403417 B = 8160.604876 C = 8924.267049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.032 4.032 3 C -0.087 4.087 4 C -0.063 4.063 5 C 0.133 3.867 6 N -0.657 5.657 7 C 0.510 3.490 8 O -0.566 6.566 9 C -0.114 4.114 10 C 0.038 3.962 11 C -0.543 4.543 12 H 0.081 0.919 13 C -0.009 4.009 14 N -0.939 5.939 15 Si 0.975 3.025 16 H -0.262 1.262 17 H -0.291 1.291 18 H -0.260 1.260 19 C -0.094 4.094 20 C -0.056 4.056 21 N 0.033 4.967 22 O -0.252 6.252 23 O -0.118 6.118 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.111 0.889 27 H 0.204 0.796 28 H 0.196 0.804 29 H 0.439 0.561 30 H 0.118 0.882 31 H 0.115 0.885 32 H -0.020 1.020 33 H -0.018 1.018 34 H 0.262 0.738 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.936 19.923 9.834 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.034 4.034 3 C -0.105 4.105 4 C -0.083 4.083 5 C 0.037 3.963 6 N -0.305 5.305 7 C 0.300 3.700 8 O -0.443 6.443 9 C -0.153 4.153 10 C 0.000 4.000 11 C -0.581 4.581 12 H 0.099 0.901 13 C -0.206 4.206 14 N -0.579 5.579 15 Si 0.798 3.202 16 H -0.186 1.186 17 H -0.217 1.217 18 H -0.185 1.185 19 C -0.116 4.116 20 C -0.140 4.140 21 N 0.545 4.455 22 O -0.445 6.445 23 O -0.347 6.347 24 H 0.111 0.889 25 H 0.103 0.897 26 H 0.129 0.871 27 H 0.221 0.779 28 H 0.213 0.787 29 H 0.280 0.720 30 H 0.136 0.864 31 H 0.133 0.867 32 H -0.001 1.001 33 H 0.000 1.000 34 H 0.071 0.929 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.752 19.612 9.352 26.837 hybrid contribution 1.004 -1.457 -0.235 1.785 sum -14.748 18.155 9.117 25.104 Atomic orbital electron populations 1.21433 0.86822 1.06139 1.04769 1.20372 0.99416 0.89700 0.93923 1.21547 0.93116 0.97729 0.98124 1.21945 0.94981 0.97204 0.94136 1.17760 0.84209 0.92809 1.01505 1.43456 1.03364 1.32392 1.51330 1.21815 0.91922 0.80295 0.75950 1.90731 1.70996 1.35250 1.47320 1.21672 0.87218 1.02383 1.04037 1.18727 0.95131 0.92467 0.93631 1.21683 0.92503 1.10424 1.33488 0.90100 1.26170 1.04557 0.94862 0.95014 1.70180 1.38165 1.13995 1.35558 0.85363 0.78235 0.77860 0.78726 1.18610 1.21677 1.18451 1.21013 0.91877 1.00952 0.97718 1.20978 0.91856 0.83017 1.18188 1.43938 1.01094 1.03590 0.96886 1.94632 1.70542 1.20910 1.58436 1.94328 0.96290 1.93995 1.50120 0.88890 0.89743 0.87067 0.77929 0.78728 0.71973 0.86385 0.86745 1.00139 0.99958 0.92908 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.81 71.24 0.63 -1.10 16 2 C -0.03 -0.56 5.88 -19.85 -0.12 -0.68 16 3 C -0.09 -0.84 9.66 22.25 0.21 -0.62 16 4 C -0.06 -0.72 9.97 22.39 0.22 -0.49 16 5 C 0.13 3.04 6.30 38.15 0.24 3.28 16 6 N -0.66 -14.87 5.33 -303.50 -1.62 -16.49 16 7 C 0.51 18.14 7.68 87.66 0.67 18.81 16 8 O -0.57 -27.06 13.42 -3.07 -0.04 -27.10 16 9 C -0.11 -4.12 5.64 29.85 0.17 -3.95 16 10 C 0.04 2.06 4.26 29.85 0.13 2.19 16 11 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 12 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 13 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 14 N -0.94 -59.74 13.29 21.45 0.28 -59.45 16 15 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 16 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 17 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 18 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 19 C -0.09 -2.99 8.21 22.39 0.18 -2.81 16 20 C -0.06 -1.60 6.84 36.36 0.25 -1.35 16 21 N 0.03 1.14 4.45 -46.51 -0.21 0.94 16 22 O -0.25 -10.43 18.45 18.88 0.35 -10.08 16 23 O -0.12 -3.55 15.26 18.89 0.29 -3.27 16 24 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.08 1.46 5.61 -2.39 -0.01 1.45 16 26 H 0.11 0.59 8.02 -2.38 -0.02 0.57 16 27 H 0.20 -0.07 8.05 -2.91 -0.02 -0.10 16 28 H 0.20 0.39 8.06 -2.91 -0.02 0.37 16 29 H 0.44 5.38 8.82 -92.71 -0.82 4.56 16 30 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 31 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 32 H -0.02 -1.24 8.10 -2.39 -0.02 -1.25 16 33 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 34 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 35 H 0.12 5.14 5.78 -2.91 -0.02 5.13 16 Total: -1.00 -87.36 309.90 4.68 -82.68 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 0.32 Total: 3.64 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 3.29 Total: -16.59 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -1.54 Total: -75.00 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: 0.60 Total: -40.44 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -87.36 4.68 -82.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291987463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.340 kcal (2) G-P(sol) polarization free energy of solvation -87.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds