Wall clock time and date at job start Tue Mar 31 2020 00:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38898 * 120.03276 * 2 1 4 4 N 1.39923 * 120.07175 * 0.02562 * 3 2 1 5 5 C 1.34771 * 120.00084 * 146.33934 * 4 3 2 6 6 O 1.21294 * 119.99941 * 4.32026 * 5 4 3 7 7 C 1.50707 * 120.00241 * 184.31996 * 5 4 3 8 8 C 1.53001 * 109.47157 * 179.97438 * 7 5 4 9 9 C 1.50693 * 109.46886 * 179.97438 * 8 7 5 10 10 H 1.08005 * 120.00275 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00017 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99977 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00317 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46705 * 90.00215 * 13 11 9 15 15 H 1.48491 * 109.47579 * 210.00114 * 13 11 9 16 16 H 1.48500 * 109.47355 * 330.00773 * 13 11 9 17 17 C 1.38851 * 119.85889 * 179.75104 * 3 2 1 18 18 C 1.38139 * 119.92544 * 0.24313 * 17 3 2 19 19 C 1.38255 * 120.07398 * 0.02562 * 18 17 3 20 20 C 1.38088 * 120.03888 * 180.25286 * 2 1 3 21 21 N 1.48016 * 119.96376 * 0.02562 * 20 2 1 22 22 O 1.21801 * 119.99834 * 187.50372 * 21 20 2 23 23 O 1.21798 * 120.00276 * 7.50002 * 21 20 2 24 24 H 1.09004 * 109.47214 * 97.27712 * 1 2 3 25 25 H 1.08999 * 109.47450 * 217.27474 * 1 2 3 26 26 H 1.09002 * 109.47669 * 337.27730 * 1 2 3 27 27 H 0.97001 * 120.00085 * 326.61664 * 4 3 2 28 28 H 1.09005 * 109.46689 * 299.99712 * 7 5 4 29 29 H 1.08997 * 109.46680 * 59.99624 * 7 5 4 30 30 H 1.08999 * 109.47185 * 299.99872 * 8 7 5 31 31 H 1.09003 * 109.46855 * 59.99856 * 8 7 5 32 32 H 0.97000 * 120.00119 * 179.97438 * 12 11 9 33 33 H 1.07991 * 120.03871 * 180.27585 * 17 3 2 34 34 H 1.08006 * 119.95900 * 180.02562 * 18 17 3 35 35 H 1.08003 * 119.93116 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2021 1.2025 0.0000 4 7 1.5047 2.4155 0.0005 5 6 2.0113 3.4838 0.6475 6 8 3.1074 3.4172 1.1626 7 6 1.2159 4.7611 0.7310 8 6 2.0121 5.8076 1.5132 9 6 1.2170 7.0850 1.5961 10 1 0.2415 7.1447 1.1364 11 6 1.7348 8.1775 2.2588 12 7 2.9230 8.1050 2.8181 13 14 0.7496 9.7613 2.3610 14 1 -0.1001 9.7378 3.5787 15 1 1.6779 10.9184 2.4274 16 1 -0.1124 9.8866 1.1583 17 6 3.5906 1.1983 0.0052 18 6 4.2761 -0.0010 0.0053 19 6 3.5812 -1.1962 -0.0003 20 6 2.1982 -1.1954 -0.0053 21 7 1.4582 -2.4773 -0.0115 22 8 2.0594 -3.5282 0.1216 23 8 0.2481 -2.4813 -0.1497 24 1 -0.3634 -0.1302 -1.0194 25 1 -0.3634 -0.8177 0.6224 26 1 -0.3634 0.9479 0.3969 27 1 0.6547 2.4865 -0.4613 28 1 1.0176 5.1320 -0.2747 29 1 0.2715 4.5684 1.2400 30 1 2.2101 5.4365 2.5188 31 1 2.9567 6.0003 1.0046 32 1 3.2874 8.8738 3.2840 33 1 4.1340 2.1315 0.0097 34 1 5.3562 -0.0049 0.0098 35 1 4.1195 -2.1326 0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292011338.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:38 Heat of formation + Delta-G solvation = -19.766903 kcal Electronic energy + Delta-G solvation = -20708.112817 eV Core-core repulsion = 17288.378312 eV Total energy + Delta-G solvation = -3419.734504 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.39823 -40.76667 -38.76623 -36.80057 -35.10106 -33.69641 -33.15957 -31.54786 -30.41436 -27.94389 -26.22578 -25.84029 -23.28251 -22.28581 -21.47187 -20.17602 -19.16101 -18.72797 -17.75080 -17.42840 -16.56859 -16.28138 -16.01786 -15.76071 -14.85490 -14.53604 -14.15801 -14.01729 -13.65114 -13.11509 -12.84462 -12.60313 -12.48148 -12.32129 -12.01953 -11.55068 -11.35603 -11.26932 -11.03931 -10.87539 -10.71770 -10.69705 -10.16161 -9.90732 -9.62700 -9.41509 -9.23902 -8.53571 -8.43745 -6.08495 -4.13793 -0.26977 0.68338 1.22979 1.25247 2.67806 2.92136 3.19873 3.25797 3.32666 3.34557 4.13786 4.29180 4.36956 4.46192 4.73580 4.77050 4.99993 5.21185 5.25089 5.27083 5.30571 5.53972 5.74887 5.78843 5.81131 5.94520 5.94832 5.99856 6.28197 6.52351 6.62162 7.29556 7.53812 7.58600 7.65763 7.90644 8.14817 8.30549 8.93548 9.50861 11.02303 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040403 B = 0.003186 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.848283 B = 8787.365291 C = 9315.163446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.054 4.054 3 C 0.158 3.842 4 N -0.681 5.681 5 C 0.512 3.488 6 O -0.510 6.510 7 C -0.128 4.128 8 C 0.037 3.963 9 C -0.531 4.531 10 H 0.057 0.943 11 C 0.059 3.941 12 N -0.889 5.889 13 Si 0.894 3.106 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.071 4.071 18 C -0.104 4.104 19 C -0.076 4.076 20 C -0.032 4.032 21 N 0.036 4.964 22 O -0.171 6.171 23 O -0.161 6.161 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.414 0.586 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.262 0.738 33 H 0.163 0.837 34 H 0.150 0.850 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 -16.802 -8.233 18.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.058 4.058 3 C 0.061 3.939 4 N -0.327 5.327 5 C 0.302 3.698 6 O -0.383 6.383 7 C -0.168 4.168 8 C -0.001 4.001 9 C -0.569 4.569 10 H 0.075 0.925 11 C -0.143 4.143 12 N -0.527 5.527 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.091 4.091 18 C -0.123 4.123 19 C -0.096 4.096 20 C -0.116 4.116 21 N 0.552 4.448 22 O -0.384 6.384 23 O -0.375 6.375 24 H 0.107 0.893 25 H 0.117 0.883 26 H 0.091 0.909 27 H 0.251 0.749 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.180 0.820 34 H 0.167 0.833 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.680 -16.030 -7.718 17.804 hybrid contribution -1.038 0.550 -0.080 1.178 sum -1.718 -15.480 -7.798 17.418 Atomic orbital electron populations 1.21201 0.88379 1.04603 1.04472 1.19526 0.98000 0.89623 0.98630 1.17458 0.91335 0.85124 0.99996 1.44021 1.25398 1.08738 1.54579 1.22033 0.87308 0.84930 0.75479 1.90666 1.20555 1.82669 1.44387 1.21960 1.00009 0.91104 1.03724 1.18934 0.94980 0.90843 0.95340 1.21163 1.03346 0.96944 1.35453 0.92476 1.25021 0.94982 0.98950 0.95343 1.69985 1.16471 1.30769 1.35463 0.86564 0.79834 0.82938 0.78470 1.20594 1.21155 1.19825 1.21965 0.92796 1.00682 0.93690 1.21117 1.01083 0.90281 0.99836 1.20984 0.90734 1.00845 0.97036 1.20593 0.92206 0.82660 1.16166 1.43546 1.01056 1.02758 0.97482 1.94530 1.70164 1.20135 1.53572 1.94470 0.96567 1.93801 1.52683 0.89338 0.88280 0.90864 0.74892 0.89456 0.89478 0.95677 0.95652 0.92813 0.81975 0.83251 0.83131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.25 36.00 0.30 -0.93 16 2 C -0.05 -0.61 5.90 -104.44 -0.62 -1.22 16 3 C 0.16 1.93 6.31 -83.69 -0.53 1.40 16 4 N -0.68 -8.22 4.77 -9.86 -0.05 -8.27 16 5 C 0.51 8.40 7.68 -10.98 -0.08 8.32 16 6 O -0.51 -10.21 13.32 5.55 0.07 -10.14 16 7 C -0.13 -2.27 5.64 -27.88 -0.16 -2.42 16 8 C 0.04 0.91 4.26 -27.89 -0.12 0.79 16 9 C -0.53 -14.21 9.11 -34.44 -0.31 -14.52 16 10 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 13 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 C -0.07 -0.87 8.71 -39.39 -0.34 -1.21 16 18 C -0.10 -1.01 10.04 -39.61 -0.40 -1.41 16 19 C -0.08 -0.77 9.56 -39.55 -0.38 -1.15 16 20 C -0.03 -0.38 6.82 -79.98 -0.55 -0.93 16 21 N 0.04 0.46 4.45 33.95 0.15 0.61 16 22 O -0.17 -2.32 18.47 -29.46 -0.54 -2.86 16 23 O -0.16 -2.10 15.39 -29.46 -0.45 -2.55 16 24 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.10 1.01 5.96 -51.93 -0.31 0.70 16 26 H 0.07 0.60 6.78 -51.93 -0.35 0.25 16 27 H 0.41 3.64 7.63 -40.82 -0.31 3.33 16 28 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 31 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.16 2.23 6.10 -52.49 -0.32 1.91 16 34 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.15 1.24 7.62 -52.48 -0.40 0.84 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -32.21 307.11 -7.53 -39.73 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -3.77 Total: 0.32 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -3.28 Total: -11.73 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.84 Total: -33.21 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.92 Total: -15.55 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.21 -7.53 -39.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292011338.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.964 kcal (2) G-P(sol) polarization free energy of solvation -32.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds