Wall clock time and date at job start Mon Mar 30 2020 23:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.47124 * 240.00821 * 3 2 1 5 5 H 1.48506 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47143 * 120.00213 * 3 2 1 7 7 C 1.37870 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47078 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47078 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99633 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99933 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99724 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47144 * 180.02562 * 14 13 11 16 16 C 1.38238 * 119.99764 * 90.00180 * 15 14 13 17 17 C 1.38234 * 119.99693 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00240 * 0.02562 * 17 16 15 19 19 N 1.48026 * 119.99930 * 179.97438 * 18 17 16 20 20 O 1.21793 * 119.99867 * 0.02562 * 19 18 17 21 21 O 1.21799 * 119.99956 * 179.97438 * 19 18 17 22 22 C 1.38233 * 120.00037 * 0.26327 * 18 17 16 23 23 C 1.38234 * 120.00189 * 270.02504 * 15 14 13 24 24 H 0.96998 * 119.99944 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47237 * 59.99943 * 9 7 2 26 26 H 1.08997 * 109.47377 * 300.00017 * 9 7 2 27 27 H 1.09000 * 109.47029 * 60.00476 * 10 9 7 28 28 H 1.08996 * 109.47799 * 299.99854 * 10 9 7 29 29 H 0.96993 * 119.99856 * 0.02562 * 13 11 10 30 30 H 1.09004 * 109.47103 * 60.00380 * 14 13 11 31 31 H 1.08997 * 109.47720 * 300.00327 * 14 13 11 32 32 H 1.07991 * 120.00287 * 0.02562 * 16 15 14 33 33 H 1.08004 * 120.00214 * 179.97438 * 17 16 15 34 34 H 1.08004 * 119.99939 * 179.72815 * 22 18 17 35 35 H 1.07999 * 119.99990 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4920 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0003 13 7 2.1659 -6.1344 -0.0016 14 6 1.4335 -7.4031 -0.0004 15 6 2.4127 -8.5485 -0.0005 16 6 2.8627 -9.0732 1.1966 17 6 3.7606 -10.1242 1.1965 18 6 4.2089 -10.6502 -0.0007 19 7 5.1709 -11.7753 -0.0008 20 8 5.5669 -12.2379 1.0540 21 8 5.5655 -12.2390 -1.0556 22 6 3.7636 -10.1216 -1.1978 23 6 2.8614 -9.0741 -1.1977 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5572 0.8896 27 1 2.8727 -3.6046 0.8877 28 1 2.8714 -3.6039 -0.8922 29 1 3.1359 -6.1343 -0.0019 30 1 0.8058 -7.4611 -0.8898 31 1 0.8077 -7.4606 0.8902 32 1 2.5122 -8.6626 2.1319 33 1 4.1125 -10.5340 2.1318 34 1 4.1173 -10.5296 -2.1331 35 1 2.5099 -8.6642 -2.1330 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292258027.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:49 Heat of formation + Delta-G solvation = -28.812472 kcal Electronic energy + Delta-G solvation = -19824.602073 eV Core-core repulsion = 16404.475323 eV Total energy + Delta-G solvation = -3420.126750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.52008 -40.27446 -39.08384 -36.90097 -35.20994 -33.53314 -32.40091 -31.94250 -31.00915 -28.24759 -26.00875 -24.71161 -23.71139 -22.20655 -21.52493 -19.88624 -19.76757 -18.99588 -17.86207 -17.25666 -16.47269 -16.20829 -15.81062 -15.49969 -15.06433 -14.94792 -14.47956 -14.38802 -13.66164 -13.35387 -13.19045 -12.44165 -12.21943 -12.20423 -11.98823 -11.82699 -11.51793 -11.47008 -11.25155 -10.96167 -10.67639 -10.14748 -10.04431 -9.92182 -9.75764 -9.28186 -9.11441 -9.06401 -8.37832 -6.01948 -4.06867 -0.62154 0.43385 0.89255 1.02517 2.67245 3.06533 3.30320 3.35210 3.36429 3.47780 3.86394 3.94286 4.00903 4.32529 4.41975 4.42902 4.75748 5.02579 5.16484 5.18256 5.24128 5.32870 5.33059 5.59454 5.73836 5.76440 6.05456 6.11102 6.12522 6.41357 6.77993 7.28058 7.63650 7.67448 7.77373 7.99721 8.30733 8.58233 9.01112 9.57108 11.08886 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038414 B = 0.002513 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.725263 B =11138.596232 C =11433.993984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.512 3.488 12 O -0.530 6.530 13 N -0.743 5.743 14 C 0.151 3.849 15 C -0.047 4.047 16 C -0.100 4.100 17 C -0.055 4.055 18 C -0.044 4.044 19 N 0.028 4.972 20 O -0.160 6.160 21 O -0.161 6.161 22 C -0.055 4.055 23 C -0.100 4.100 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.399 0.601 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.730 -21.464 -0.003 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.404 6.404 13 N -0.398 5.398 14 C 0.028 3.972 15 C -0.048 4.048 16 C -0.119 4.119 17 C -0.074 4.074 18 C -0.127 4.127 19 N 0.548 4.452 20 O -0.376 6.376 21 O -0.376 6.376 22 C -0.074 4.074 23 C -0.119 4.119 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.233 0.767 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.169 0.831 33 H 0.173 0.827 34 H 0.173 0.827 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.180 -20.777 -0.004 21.677 hybrid contribution 1.223 0.496 0.001 1.320 sum 7.403 -20.281 -0.003 21.590 Atomic orbital electron populations 1.69983 1.06064 1.26793 1.49957 1.25023 0.94840 0.99264 0.95215 0.86642 0.79549 0.83107 0.78572 1.20225 1.21246 1.20232 1.21168 0.92896 0.90986 1.51734 0.92641 1.18905 0.93144 0.89340 0.98660 1.21888 1.00781 0.91588 1.02646 1.21667 0.88685 0.85422 0.74178 1.90691 1.14422 1.87426 1.47885 1.46254 1.10146 1.04704 1.78711 1.20236 0.92246 0.80585 1.04176 1.20531 0.95284 0.95745 0.93213 1.21242 0.96293 0.95181 0.99211 1.21100 0.94539 0.94531 0.97247 1.21202 0.99886 0.94390 0.97212 1.43651 1.00064 1.01067 1.00464 1.94547 1.59954 1.62492 1.20644 1.94548 1.60042 1.62417 1.20637 1.21101 0.94527 0.94536 0.97248 1.21244 0.96237 0.95236 0.99211 0.92829 0.95796 0.95789 0.90101 0.90090 0.76691 0.89952 0.89965 0.83085 0.82711 0.82710 0.83084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 10 C -0.13 -2.43 5.64 -27.88 -0.16 -2.58 16 11 C 0.51 8.79 7.83 -10.98 -0.09 8.71 16 12 O -0.53 -11.46 15.98 5.56 0.09 -11.38 16 13 N -0.74 -8.51 5.55 -61.47 -0.34 -8.86 16 14 C 0.15 1.41 5.80 -5.20 -0.03 1.37 16 15 C -0.05 -0.32 5.25 -104.63 -0.55 -0.87 16 16 C -0.10 -0.62 9.70 -39.58 -0.38 -1.01 16 17 C -0.06 -0.38 9.56 -39.58 -0.38 -0.76 16 18 C -0.04 -0.37 6.85 -79.95 -0.55 -0.92 16 19 N 0.03 0.31 4.45 33.96 0.15 0.46 16 20 O -0.16 -1.87 18.45 -29.46 -0.54 -2.42 16 21 O -0.16 -1.87 18.45 -29.46 -0.54 -2.42 16 22 C -0.06 -0.38 9.56 -39.58 -0.38 -0.76 16 23 C -0.10 -0.62 9.70 -39.58 -0.38 -1.01 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 26 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.40 3.57 8.46 -40.82 -0.35 3.22 16 30 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 31 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 32 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.16 0.89 7.61 -52.48 -0.40 0.49 16 34 H 0.16 0.89 7.61 -52.48 -0.40 0.49 16 35 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 320.24 15.07 4.83 4.83 Total: -1.00 -34.24 320.24 -8.13 -42.37 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -4.06 Total: -2.31 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -3.42 Total: -10.35 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.55 Total: -34.54 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -1.00 Total: -16.21 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.24 -8.13 -42.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292258027.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.556 kcal (2) G-P(sol) polarization free energy of solvation -34.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds