Wall clock time and date at job start Mon Mar 30 2020 23:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.47124 * 240.00821 * 3 2 1 5 5 H 1.48506 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47143 * 120.00213 * 3 2 1 7 7 C 1.37870 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47078 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47078 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99633 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99933 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99724 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47144 * 180.02562 * 14 13 11 16 16 C 1.38238 * 119.99764 * 90.00180 * 15 14 13 17 17 C 1.38234 * 119.99693 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00240 * 0.02562 * 17 16 15 19 19 N 1.48026 * 119.99930 * 179.97438 * 18 17 16 20 20 O 1.21793 * 119.99867 * 0.02562 * 19 18 17 21 21 O 1.21799 * 119.99956 * 179.97438 * 19 18 17 22 22 C 1.38233 * 120.00037 * 0.26327 * 18 17 16 23 23 C 1.38234 * 120.00189 * 270.02504 * 15 14 13 24 24 H 0.96998 * 119.99944 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47237 * 59.99943 * 9 7 2 26 26 H 1.08997 * 109.47377 * 300.00017 * 9 7 2 27 27 H 1.09000 * 109.47029 * 60.00476 * 10 9 7 28 28 H 1.08996 * 109.47799 * 299.99854 * 10 9 7 29 29 H 0.96993 * 119.99856 * 0.02562 * 13 11 10 30 30 H 1.09004 * 109.47103 * 60.00380 * 14 13 11 31 31 H 1.08997 * 109.47720 * 300.00327 * 14 13 11 32 32 H 1.07991 * 120.00287 * 0.02562 * 16 15 14 33 33 H 1.08004 * 120.00214 * 179.97438 * 17 16 15 34 34 H 1.08004 * 119.99939 * 179.72815 * 22 18 17 35 35 H 1.07999 * 119.99990 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4920 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0003 13 7 2.1659 -6.1344 -0.0016 14 6 1.4335 -7.4031 -0.0004 15 6 2.4127 -8.5485 -0.0005 16 6 2.8627 -9.0732 1.1966 17 6 3.7606 -10.1242 1.1965 18 6 4.2089 -10.6502 -0.0007 19 7 5.1709 -11.7753 -0.0008 20 8 5.5669 -12.2379 1.0540 21 8 5.5655 -12.2390 -1.0556 22 6 3.7636 -10.1216 -1.1978 23 6 2.8614 -9.0741 -1.1977 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5572 0.8896 27 1 2.8727 -3.6046 0.8877 28 1 2.8714 -3.6039 -0.8922 29 1 3.1359 -6.1343 -0.0019 30 1 0.8058 -7.4611 -0.8898 31 1 0.8077 -7.4606 0.8902 32 1 2.5122 -8.6626 2.1319 33 1 4.1125 -10.5340 2.1318 34 1 4.1173 -10.5296 -2.1331 35 1 2.5099 -8.6642 -2.1330 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292258027.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:47:48 Heat of formation + Delta-G solvation = -50.922074 kcal Electronic energy + Delta-G solvation = -19825.560817 eV Core-core repulsion = 16404.475323 eV Total energy + Delta-G solvation = -3421.085494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.28937 -41.08011 -40.23367 -37.72229 -36.24883 -35.52602 -33.43364 -32.70475 -32.46701 -29.24801 -27.59006 -25.80292 -24.23848 -23.58632 -22.59241 -21.26959 -20.43852 -19.78393 -18.86705 -18.63857 -17.77995 -17.23626 -16.95367 -16.43384 -16.29084 -16.21028 -15.65766 -14.92267 -14.74110 -14.55018 -14.28897 -14.05263 -13.56443 -13.24660 -13.08743 -12.79555 -12.77362 -12.51296 -12.46843 -12.34169 -12.31518 -11.89362 -11.63264 -11.31874 -11.01036 -10.55527 -10.44929 -10.42766 -10.14394 -8.17594 -6.31258 -1.34884 -0.06609 0.16330 0.32968 1.42879 1.46529 1.54267 1.70527 1.99714 2.40890 2.54532 3.15635 3.28602 3.33934 3.47442 3.74962 3.88142 4.07684 4.27529 4.37114 4.50466 4.58314 4.65495 4.66657 4.72744 4.75037 5.09944 5.10931 5.16597 5.35659 5.42163 5.51659 5.65438 5.86828 6.18541 6.41907 6.54575 6.87591 7.31252 7.39200 8.94615 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.038414 B = 0.002513 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.725263 B =11138.596232 C =11433.993984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.041 3.959 10 C -0.120 4.120 11 C 0.516 3.484 12 O -0.584 6.584 13 N -0.716 5.716 14 C 0.152 3.848 15 C -0.043 4.043 16 C -0.091 4.091 17 C -0.054 4.054 18 C -0.057 4.057 19 N 0.029 4.971 20 O -0.180 6.180 21 O -0.180 6.180 22 C -0.054 4.054 23 C -0.091 4.091 24 H 0.263 0.737 25 H -0.017 1.017 26 H -0.017 1.017 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.416 0.584 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.169 0.831 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.627 -21.507 -0.004 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.093 0.907 9 C 0.003 3.997 10 C -0.160 4.160 11 C 0.305 3.695 12 O -0.463 6.463 13 N -0.370 5.370 14 C 0.029 3.971 15 C -0.044 4.044 16 C -0.110 4.110 17 C -0.073 4.073 18 C -0.140 4.140 19 N 0.544 4.456 20 O -0.393 6.393 21 O -0.394 6.394 22 C -0.073 4.073 23 C -0.110 4.110 24 H 0.071 0.929 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.253 0.747 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.187 0.813 33 H 0.183 0.817 34 H 0.183 0.817 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.164 -20.889 -0.005 22.428 hybrid contribution 0.594 0.460 0.001 0.751 sum 8.758 -20.429 -0.003 22.227 Atomic orbital electron populations 1.70161 1.08229 1.27834 1.51479 1.26104 0.95701 1.03842 0.94732 0.85417 0.78086 0.77574 0.79435 1.18756 1.21462 1.18766 1.21702 0.93992 0.91721 1.50745 0.90664 1.18697 0.93763 0.92403 0.94823 1.21641 0.99322 0.90103 1.04942 1.21253 0.87738 0.86494 0.74035 1.90682 1.16570 1.88227 1.50817 1.45873 1.10952 1.04017 1.76180 1.20298 0.92645 0.79905 1.04261 1.20315 0.95003 0.95144 0.93888 1.21401 0.95416 0.94481 0.99735 1.21261 0.94377 0.94455 0.97212 1.21424 1.00019 0.94051 0.98527 1.43994 1.00136 1.01414 1.00047 1.94531 1.60743 1.63314 1.20753 1.94533 1.60832 1.63241 1.20746 1.21262 0.94369 0.94457 0.97213 1.21402 0.95359 0.94536 0.99735 0.92881 0.99818 0.99810 0.87720 0.87710 0.74670 0.89999 0.90012 0.81311 0.81695 0.81694 0.81308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.23 13.29 21.45 0.28 -57.95 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 3 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 7 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 8 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 9 C 0.04 2.17 4.26 29.85 0.13 2.29 16 10 C -0.12 -4.37 5.64 29.85 0.17 -4.20 16 11 C 0.52 17.24 7.83 87.66 0.69 17.93 16 12 O -0.58 -25.74 15.98 -3.03 -0.05 -25.79 16 13 N -0.72 -14.56 5.55 -466.79 -2.59 -17.15 16 14 C 0.15 2.45 5.80 85.63 0.50 2.95 16 15 C -0.04 -0.46 5.25 -19.87 -0.10 -0.56 16 16 C -0.09 -0.86 9.70 22.27 0.22 -0.64 16 17 C -0.05 -0.62 9.56 22.27 0.21 -0.41 16 18 C -0.06 -0.87 6.85 36.37 0.25 -0.62 16 19 N 0.03 0.61 4.45 -46.46 -0.21 0.41 16 20 O -0.18 -4.13 18.45 18.89 0.35 -3.78 16 21 O -0.18 -4.13 18.45 18.89 0.35 -3.78 16 22 C -0.05 -0.62 9.56 22.27 0.21 -0.41 16 23 C -0.09 -0.86 9.70 22.27 0.22 -0.64 16 24 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 25 H -0.02 -1.00 8.10 -2.38 -0.02 -1.02 16 26 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 27 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 28 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 29 H 0.42 5.88 8.46 -92.71 -0.78 5.09 16 30 H 0.08 1.42 8.09 -2.38 -0.02 1.40 16 31 H 0.08 1.42 8.08 -2.39 -0.02 1.40 16 32 H 0.17 1.01 8.06 -2.92 -0.02 0.99 16 33 H 0.17 1.55 7.61 -2.91 -0.02 1.53 16 34 H 0.17 1.55 7.61 -2.91 -0.02 1.53 16 35 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 Total: -1.00 -77.43 320.24 3.67 -73.76 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: 0.34 Total: 2.90 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 3.18 Total: -13.90 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -2.51 Total: -74.69 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: 0.65 Total: -33.35 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -77.43 3.67 -73.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292258027.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.834 kcal (2) G-P(sol) polarization free energy of solvation -77.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds