Wall clock time and date at job start Tue Mar 31 2020 00:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38305 * 119.92335 * 2 1 4 4 C 1.38084 * 120.07405 * 179.97438 * 3 2 1 5 5 C 1.38936 * 119.92313 * 0.02562 * 4 3 2 6 6 N 1.39678 * 120.07210 * 179.97438 * 5 4 3 7 7 C 1.47958 * 111.00124 * 348.36944 * 6 5 4 8 8 C 1.53934 * 86.18225 * 222.42163 * 7 6 5 9 9 O 1.42899 * 113.72902 * 269.25807 * 8 7 6 10 10 C 1.50698 * 113.73429 * 138.07792 * 8 7 6 11 11 H 1.07996 * 119.99932 * 1.90611 * 10 8 7 12 12 C 1.37877 * 119.99526 * 181.89715 * 10 8 7 13 13 N 1.31520 * 119.99882 * 180.02562 * 12 10 8 14 14 Si 1.86799 * 120.00325 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.47129 * 269.99870 * 14 12 10 16 16 H 1.48497 * 109.47343 * 29.99930 * 14 12 10 17 17 H 1.48507 * 109.46955 * 150.00032 * 14 12 10 18 18 C 1.48190 * 111.06950 * 248.93667 * 6 5 4 19 19 C 1.38884 * 119.85155 * 0.26421 * 5 4 3 20 20 N 1.48003 * 120.03917 * 179.72649 * 19 5 4 21 21 O 1.21799 * 120.00511 * 186.57182 * 20 19 5 22 22 O 1.21810 * 119.99931 * 6.57329 * 20 19 5 23 23 C 1.38132 * 119.92400 * 359.45555 * 19 5 4 24 24 H 1.08997 * 109.47099 * 90.00159 * 1 2 3 25 25 H 1.09000 * 109.47199 * 209.99835 * 1 2 3 26 26 H 1.08997 * 109.47526 * 330.00210 * 1 2 3 27 27 H 1.07997 * 119.96672 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.04200 * 179.97438 * 4 3 2 29 29 H 1.08996 * 113.76025 * 108.09628 * 7 6 5 30 30 H 1.09004 * 113.85987 * 336.75294 * 7 6 5 31 31 H 0.96706 * 114.00058 * 178.10108 * 9 8 7 32 32 H 0.96991 * 120.00413 * 180.02562 * 13 12 10 33 33 H 1.09005 * 113.75942 * 23.24069 * 18 6 5 34 34 H 1.08998 * 113.82643 * 251.81462 * 18 6 5 35 35 H 1.08006 * 119.95807 * 180.25084 * 23 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5777 1.2023 0.0005 5 6 4.2740 0.0000 0.0005 6 7 5.6708 0.0000 0.0005 7 6 6.2010 1.3530 -0.2779 8 6 7.2228 0.6524 -1.1916 9 8 8.4351 0.2907 -0.5272 10 6 7.4591 1.3669 -2.4972 11 1 6.9533 2.2989 -2.7019 12 6 8.3211 0.8308 -3.4302 13 7 8.5277 1.4546 -4.5694 14 14 9.1954 -0.7815 -3.0762 15 1 10.4906 -0.5051 -2.4043 16 1 8.3479 -1.6205 -2.1914 17 1 9.4431 -1.5007 -4.3517 18 6 6.2035 -0.4969 -1.2899 19 6 3.5780 -1.2019 -0.0056 20 7 4.3155 -2.4851 -0.0117 21 8 3.7105 -3.5347 -0.1377 22 8 5.5275 -2.4915 0.1093 23 6 2.1967 -1.1983 -0.0002 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6551 2.1329 0.0004 28 1 4.1160 2.1386 0.0001 29 1 6.6476 1.8370 0.5906 30 1 5.5039 1.9983 -0.8125 31 1 9.0682 -0.1756 -1.0902 32 1 9.1338 1.0773 -5.2260 33 1 5.5060 -0.3953 -2.1214 34 1 6.6522 -1.4884 -1.2285 35 1 1.6549 -2.1326 -0.0009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302446548.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:31 Heat of formation + Delta-G solvation = 17.953838 kcal Electronic energy + Delta-G solvation = -22243.551639 eV Core-core repulsion = 18825.452829 eV Total energy + Delta-G solvation = -3418.098810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.34522 -41.95271 -39.90363 -37.62471 -36.85752 -34.60192 -33.77438 -32.86477 -30.17841 -27.96930 -27.65634 -27.50727 -25.14727 -23.55364 -22.46553 -20.97956 -19.99440 -19.69328 -19.31454 -18.61237 -18.08576 -17.91389 -16.94782 -16.60689 -15.85053 -15.70029 -15.27089 -14.92782 -14.92059 -14.60307 -14.08630 -13.98767 -13.44442 -13.10073 -13.01589 -12.92327 -12.71375 -12.57174 -12.49890 -12.45365 -12.18996 -12.04502 -11.97198 -11.26783 -11.01775 -10.85450 -10.59254 -10.50255 -9.29049 -8.50721 -6.60697 -1.16589 -0.07150 0.34149 0.49829 1.17689 1.28743 1.32210 2.11396 2.19306 2.61347 2.73673 3.27181 3.37265 3.56694 3.64669 3.79281 3.89929 3.92899 4.05903 4.21384 4.40348 4.57659 4.58963 4.63738 4.77936 4.84832 4.87495 4.93854 5.11703 5.18015 5.23596 5.26251 5.34690 5.54813 5.91436 5.99418 6.45282 6.59697 6.67587 7.07717 8.64007 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021945 B = 0.006337 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.607397 B = 4417.153046 C = 5008.712383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.103 4.103 3 C -0.026 4.026 4 C -0.170 4.170 5 C 0.121 3.879 6 N -0.434 5.434 7 C 0.028 3.972 8 C 0.193 3.807 9 O -0.554 6.554 10 C -0.543 4.543 11 H 0.064 0.936 12 C 0.035 3.965 13 N -0.919 5.919 14 Si 0.902 3.098 15 H -0.248 1.248 16 H -0.244 1.244 17 H -0.282 1.282 18 C -0.004 4.004 19 C -0.087 4.087 20 N 0.036 4.964 21 O -0.191 6.191 22 O -0.189 6.189 23 C -0.046 4.046 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.186 0.814 28 H 0.167 0.833 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.353 0.647 32 H 0.273 0.727 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.786 -0.215 8.651 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.105 4.105 3 C -0.045 4.045 4 C -0.191 4.191 5 C 0.020 3.980 6 N -0.148 5.148 7 C -0.099 4.099 8 C 0.152 3.848 9 O -0.365 6.365 10 C -0.581 4.581 11 H 0.082 0.918 12 C -0.167 4.167 13 N -0.557 5.557 14 Si 0.728 3.272 15 H -0.173 1.173 16 H -0.169 1.169 17 H -0.209 1.209 18 C -0.130 4.130 19 C -0.174 4.174 20 N 0.544 4.456 21 O -0.401 6.401 22 O -0.397 6.397 23 C -0.066 4.066 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.203 0.797 28 H 0.185 0.815 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.205 0.795 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -17.054 0.284 9.576 19.561 hybrid contribution 1.281 -1.259 -1.339 2.240 sum -15.773 -0.975 8.237 17.822 Atomic orbital electron populations 1.20873 0.86445 1.04949 1.04080 1.20283 0.98896 0.90520 1.00811 1.21873 0.92505 1.00148 0.89941 1.21779 0.96044 0.96489 1.04752 1.19847 0.92015 0.92624 0.93563 1.65657 1.03679 1.14562 1.30928 1.24426 0.95402 0.90302 0.99729 1.20502 0.82553 0.90833 0.90954 1.86450 1.28977 1.79093 1.41976 1.21468 1.27839 1.09229 0.99578 0.91813 1.25677 0.96459 1.00009 0.94563 1.69965 1.36790 1.40607 1.08304 0.86565 0.81015 0.80907 0.78754 1.17294 1.16851 1.20864 1.25085 0.98548 1.02338 0.87026 1.21094 0.93360 0.81217 1.21734 1.43794 1.01217 1.03218 0.97362 1.94402 1.69828 1.21667 1.54186 1.94614 0.96636 1.94363 1.54111 1.21097 0.89014 1.01979 0.94473 0.89537 0.90317 0.88608 0.79685 0.81531 0.87590 0.86997 0.79493 0.91717 0.91588 0.89484 0.82076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 71.24 0.71 -0.21 16 2 C -0.10 -1.74 5.88 -19.84 -0.12 -1.86 16 3 C -0.03 -0.43 9.69 22.25 0.22 -0.21 16 4 C -0.17 -4.12 8.81 22.40 0.20 -3.93 16 5 C 0.12 4.05 5.26 38.21 0.20 4.25 16 6 N -0.43 -17.33 5.15 -708.66 -3.65 -20.98 16 7 C 0.03 1.06 6.47 86.41 0.56 1.62 16 8 C 0.19 9.04 1.05 -10.90 -0.01 9.03 16 9 O -0.55 -26.95 13.35 -148.98 -1.99 -28.94 16 10 C -0.54 -29.13 9.19 25.60 0.24 -28.90 16 11 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 12 C 0.03 1.90 5.47 84.65 0.46 2.37 16 13 N -0.92 -53.64 13.96 21.45 0.30 -53.34 16 14 Si 0.90 41.51 24.30 68.60 1.67 43.18 16 15 H -0.25 -10.65 7.05 99.48 0.70 -9.95 16 16 H -0.24 -11.07 5.15 99.48 0.51 -10.56 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 C 0.00 -0.19 4.85 86.36 0.42 0.23 16 19 C -0.09 -2.90 6.66 36.51 0.24 -2.66 16 20 N 0.04 1.42 4.39 -46.16 -0.20 1.21 16 21 O -0.19 -7.26 18.47 18.89 0.35 -6.91 16 22 O -0.19 -8.48 14.28 18.87 0.27 -8.21 16 23 C -0.05 -1.11 9.20 22.25 0.20 -0.90 16 24 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.08 0.60 8.08 -2.39 -0.02 0.58 16 26 H 0.10 0.44 8.08 -2.39 -0.02 0.42 16 27 H 0.19 1.40 8.06 -2.91 -0.02 1.37 16 28 H 0.17 3.54 5.73 -2.91 -0.02 3.52 16 29 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 30 H 0.11 3.74 5.73 -2.39 -0.01 3.72 16 31 H 0.35 16.51 3.57 -74.05 -0.26 16.25 16 32 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.07 3.00 7.86 -2.38 -0.02 2.98 16 34 H 0.09 4.21 4.96 -2.39 -0.01 4.19 16 35 H 0.16 3.34 7.63 -2.91 -0.02 3.32 16 Total: -1.00 -70.09 288.12 0.75 -69.34 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.68 Total: 25.83 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 3.32 Total: -21.18 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -3.55 Total: -73.10 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -1.37 Total: -44.07 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.67 Total: 43.18 kcal Total: -70.09 0.75 -69.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302446548.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.298 kcal (2) G-P(sol) polarization free energy of solvation -70.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds