Wall clock time and date at job start Tue Mar 31 2020 00:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38125 * 119.96462 * 2 1 4 4 C 1.38889 * 119.92902 * 180.02562 * 3 2 1 5 5 N 1.39676 * 120.07827 * 180.02562 * 4 3 2 6 6 C 1.47473 * 111.00189 * 135.34994 * 5 4 3 7 7 C 1.53512 * 87.93328 * 138.70379 * 6 5 4 8 8 O 1.42903 * 114.16861 * 87.62076 * 7 6 5 9 9 C 1.50699 * 114.17428 * 220.33176 * 7 6 5 10 10 H 1.07994 * 119.99883 * 93.84037 * 9 7 6 11 11 C 1.37879 * 119.99895 * 273.83899 * 9 7 6 12 12 N 1.31518 * 119.99888 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 119.99960 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47200 * 60.00091 * 13 11 9 15 15 H 1.48503 * 109.47144 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46886 * 300.00096 * 13 11 9 17 17 C 1.47479 * 111.00112 * 231.32426 * 5 4 3 18 18 C 1.38932 * 119.84852 * 0.27159 * 4 3 2 19 19 C 1.38081 * 119.92295 * 359.47114 * 18 4 3 20 20 C 1.38268 * 119.96302 * 180.02562 * 2 1 3 21 21 N 1.48003 * 119.92429 * 359.97248 * 20 2 1 22 22 O 1.21802 * 119.99800 * 187.05736 * 21 20 2 23 23 O 1.21802 * 120.00013 * 7.06451 * 21 20 2 24 24 H 1.09004 * 109.47057 * 96.58042 * 1 2 3 25 25 H 1.08997 * 109.46837 * 216.57980 * 1 2 3 26 26 H 1.08997 * 109.47167 * 336.58601 * 1 2 3 27 27 H 1.08003 * 120.03584 * 0.02562 * 3 2 1 28 28 H 1.08999 * 113.48145 * 253.47345 * 6 5 4 29 29 H 1.09000 * 113.47547 * 23.94125 * 6 5 4 30 30 H 0.96703 * 113.99935 * 86.16207 * 8 7 6 31 31 H 0.97003 * 119.99451 * 180.02562 * 12 11 9 32 32 H 1.08994 * 113.47598 * 336.06395 * 17 5 4 33 33 H 1.08999 * 113.47360 * 106.52788 * 17 5 4 34 34 H 1.08001 * 120.03601 * 179.70078 * 18 4 3 35 35 H 1.08004 * 119.96292 * 180.25337 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1966 0.0000 4 6 3.5857 1.1958 -0.0005 5 7 4.2865 2.4040 0.0000 6 6 5.3993 2.3691 0.9671 7 6 6.2583 3.0924 -0.0796 8 8 6.1620 4.5174 -0.0321 9 6 7.6769 2.5913 -0.1668 10 1 7.9373 1.8301 -0.8872 11 6 8.6422 3.1049 0.6731 12 7 8.3249 4.0316 1.5507 13 14 10.4004 2.4833 0.5656 14 1 10.9347 2.7422 -0.7956 15 1 11.2373 3.1892 1.5689 16 1 10.4270 1.0237 0.8384 17 6 5.2956 2.4302 -1.0753 18 6 4.2765 -0.0097 -0.0068 19 6 3.5806 -1.2023 -0.0014 20 6 2.1975 -1.1979 -0.0005 21 7 1.4550 -2.4782 -0.0005 22 8 2.0551 -3.5302 0.1286 23 8 0.2439 -2.4798 -0.1297 24 1 -0.3633 -0.1178 -1.0209 25 1 -0.3633 -0.8252 0.6124 26 1 -0.3633 0.9430 0.4084 27 1 1.6568 2.1320 0.0004 28 1 5.2151 2.9624 1.8627 29 1 5.7471 1.3611 1.1927 30 1 6.7695 4.9319 0.5958 31 1 9.0041 4.3931 2.1413 32 1 5.6156 1.4385 -1.3947 33 1 5.0232 3.0754 -1.9105 34 1 5.3565 -0.0139 -0.0121 35 1 4.1169 -2.1398 -0.0021 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302468899.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:34 Heat of formation + Delta-G solvation = 4.249845 kcal Electronic energy + Delta-G solvation = -21409.111309 eV Core-core repulsion = 17990.418249 eV Total energy + Delta-G solvation = -3418.693060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -43.36793 -42.14757 -39.74611 -37.78299 -36.48137 -34.16083 -33.81336 -32.84031 -29.66315 -28.66885 -27.03767 -26.86633 -25.54540 -23.69269 -22.50648 -20.74586 -19.93938 -19.57682 -19.52185 -18.70533 -17.64568 -17.17995 -17.01999 -16.24074 -15.80283 -15.71143 -15.32678 -14.71111 -14.52825 -14.37981 -13.92901 -13.86161 -13.51194 -13.39890 -13.23534 -12.80229 -12.72230 -12.66434 -12.51748 -12.28820 -12.26325 -12.16362 -11.73012 -11.29921 -10.70097 -10.39020 -10.25037 -10.11774 -9.96804 -8.29946 -6.47594 -1.25930 -0.11711 0.21163 0.35336 1.43735 1.46248 1.53211 2.09396 2.35054 2.78761 2.95280 3.32889 3.34145 3.67272 3.74021 3.93958 4.04184 4.13233 4.19985 4.32155 4.38471 4.52396 4.62978 4.67642 4.80353 4.93374 5.00489 5.02771 5.06631 5.08277 5.13419 5.30163 5.49826 5.70517 5.89743 6.22383 6.54866 6.58753 7.26574 7.50214 8.75423 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029229 B = 0.004283 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.732988 B = 6535.426929 C = 7253.291755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.002 4.002 3 C -0.105 4.105 4 C 0.117 3.883 5 N -0.451 5.451 6 C -0.010 4.010 7 C 0.226 3.774 8 O -0.582 6.582 9 C -0.558 4.558 10 H 0.072 0.928 11 C 0.032 3.968 12 N -0.918 5.918 13 Si 0.965 3.035 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.268 1.268 17 C 0.018 3.982 18 C -0.162 4.162 19 C -0.035 4.035 20 C -0.076 4.076 21 N 0.038 4.962 22 O -0.204 6.204 23 O -0.153 6.153 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.165 0.835 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.386 0.614 31 H 0.276 0.724 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.153 0.847 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.966 -7.022 -2.004 12.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.004 4.004 3 C -0.124 4.124 4 C 0.021 3.979 5 N -0.171 5.171 6 C -0.137 4.137 7 C 0.185 3.815 8 O -0.394 6.394 9 C -0.596 4.596 10 H 0.090 0.910 11 C -0.169 4.169 12 N -0.558 5.558 13 Si 0.790 3.210 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.193 1.193 17 C -0.108 4.108 18 C -0.183 4.183 19 C -0.055 4.055 20 C -0.160 4.160 21 N 0.551 4.449 22 O -0.409 6.409 23 O -0.371 6.371 24 H 0.117 0.883 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.183 0.817 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.241 0.759 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.170 0.830 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.487 -5.936 -2.253 12.260 hybrid contribution 1.871 -0.983 0.588 2.193 sum -8.617 -6.919 -1.665 11.175 Atomic orbital electron populations 1.21362 0.86562 1.05447 1.05109 1.20039 0.99199 0.89355 0.91840 1.21085 0.91990 0.98089 1.01222 1.20400 0.95021 0.90786 0.91651 1.66943 1.16752 1.26704 1.06713 1.24824 0.90065 1.01268 0.97554 1.19672 0.91753 0.79594 0.90521 1.86021 1.66016 1.20253 1.67130 1.21782 0.94212 1.23319 1.20304 0.90964 1.25769 1.03150 0.94368 0.93577 1.69349 1.36061 1.28576 1.21845 0.85488 0.78763 0.78714 0.77991 1.19732 1.20881 1.19277 1.24247 0.90177 1.00854 0.95531 1.21831 1.02120 0.91341 1.02985 1.20975 0.90733 1.00624 0.93119 1.21086 0.92658 0.82842 1.19385 1.43676 1.01043 1.03023 0.97142 1.94532 1.70402 1.20641 1.55363 1.94423 0.96701 1.93850 1.52132 0.88276 0.88981 0.88594 0.81721 0.92228 0.90329 0.75856 0.91451 0.89104 0.90204 0.82971 0.81787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.68 71.23 0.62 -1.66 16 2 C 0.00 -0.05 5.88 -19.89 -0.12 -0.17 16 3 C -0.10 -2.66 9.60 22.40 0.21 -2.45 16 4 C 0.12 3.55 5.25 38.21 0.20 3.76 16 5 N -0.45 -16.59 6.44 -725.66 -4.68 -21.27 16 6 C -0.01 -0.41 6.93 83.57 0.58 0.17 16 7 C 0.23 10.45 1.57 -11.20 -0.02 10.43 16 8 O -0.58 -29.76 13.54 -148.98 -2.02 -31.77 16 9 C -0.56 -27.11 8.69 25.60 0.22 -26.89 16 10 H 0.07 3.36 7.81 -2.91 -0.02 3.33 16 11 C 0.03 1.55 5.40 84.65 0.46 2.01 16 12 N -0.92 -46.40 11.02 21.45 0.24 -46.16 16 13 Si 0.97 38.75 29.54 68.60 2.03 40.77 16 14 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 15 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 16 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 17 C 0.02 0.70 6.94 83.57 0.58 1.28 16 18 C -0.16 -4.54 7.78 22.40 0.17 -4.37 16 19 C -0.03 -0.89 9.55 22.25 0.21 -0.68 16 20 C -0.08 -1.98 6.83 36.40 0.25 -1.73 16 21 N 0.04 1.08 4.45 -46.42 -0.21 0.87 16 22 O -0.20 -6.15 18.46 18.88 0.35 -5.80 16 23 O -0.15 -4.12 15.35 18.88 0.29 -3.83 16 24 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.09 1.75 5.86 -2.39 -0.01 1.74 16 26 H 0.10 1.30 8.04 -2.39 -0.02 1.28 16 27 H 0.17 3.67 8.06 -2.91 -0.02 3.65 16 28 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.08 3.09 5.99 -2.39 -0.01 3.08 16 30 H 0.39 20.36 6.34 -74.06 -0.47 19.89 16 31 H 0.28 13.26 8.31 -92.71 -0.77 12.49 16 32 H 0.09 3.15 6.39 -2.39 -0.02 3.14 16 33 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.15 4.31 6.07 -2.91 -0.02 4.29 16 35 H 0.16 3.64 7.62 -2.91 -0.02 3.62 16 Total: -1.00 -54.18 298.11 0.05 -54.14 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.67 Total: 33.36 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 3.37 Total: -20.30 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -4.65 Total: -66.56 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -1.38 Total: -41.41 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.77 kcal Total: -54.18 0.05 -54.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302468899.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.386 kcal (2) G-P(sol) polarization free energy of solvation -54.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.14 seconds