Wall clock time and date at job start Tue Mar 31 2020 00:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46900 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46986 * 300.00060 * 3 2 1 6 6 H 1.48497 * 109.47298 * 60.00153 * 3 2 1 7 7 C 1.37870 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00181 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00212 * 359.97438 * 7 2 1 10 10 O 1.42113 * 106.39836 * 66.46153 * 9 7 2 11 11 O 1.42097 * 106.40257 * 293.54677 * 9 7 2 12 12 N 1.65598 * 107.22225 * 179.97438 * 9 7 2 13 13 C 1.46504 * 119.99398 * 65.00007 * 12 9 7 14 14 C 1.53006 * 109.46883 * 164.99895 * 13 12 9 15 15 N 1.46898 * 109.47006 * 180.02562 * 14 13 12 16 16 C 1.46846 * 111.00018 * 294.20961 * 15 14 13 17 17 C 1.53033 * 109.52460 * 174.16134 * 16 15 14 18 18 C 1.53124 * 109.27811 * 59.18358 * 17 16 15 19 19 O 1.42899 * 109.52483 * 182.44119 * 18 17 16 20 20 C 1.53125 * 109.15751 * 302.34732 * 18 17 16 21 21 C 1.46851 * 110.99682 * 170.00115 * 15 14 13 22 22 H 0.97006 * 119.99528 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00439 * 245.00244 * 12 9 7 24 24 H 1.09001 * 109.46891 * 45.00329 * 13 12 9 25 25 H 1.08993 * 109.47378 * 284.99701 * 13 12 9 26 26 H 1.09001 * 109.46801 * 300.00349 * 14 13 12 27 27 H 1.09001 * 109.46998 * 59.99945 * 14 13 12 28 28 H 1.09002 * 109.46555 * 294.18280 * 16 15 14 29 29 H 1.09001 * 109.46296 * 54.14881 * 16 15 14 30 30 H 1.08997 * 109.50475 * 299.23909 * 17 16 15 31 31 H 1.09002 * 109.50799 * 179.12007 * 17 16 15 32 32 H 1.08998 * 109.57589 * 62.27874 * 18 17 16 33 33 H 0.96693 * 113.99955 * 299.68250 * 19 18 17 34 34 H 1.09005 * 109.50073 * 297.71107 * 20 18 17 35 35 H 1.08991 * 109.50379 * 177.59621 * 20 18 17 36 36 H 1.08989 * 109.46428 * 305.85572 * 21 15 14 37 37 H 1.09002 * 109.45912 * 65.83533 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4510 -2.7949 -1.2502 11 8 0.4519 -2.7955 1.2493 12 7 2.2483 -3.9354 -0.0019 13 6 3.1402 -4.1092 1.1472 14 6 3.8055 -5.4851 1.0729 15 7 4.6994 -5.6597 2.2255 16 6 5.8246 -4.7180 2.1662 17 6 6.6513 -4.8275 3.4494 18 6 7.1686 -6.2612 3.5966 19 8 7.8937 -6.3838 4.8218 20 6 5.9795 -7.2259 3.6070 21 6 5.1722 -7.0468 2.3193 22 1 -0.4850 0.8401 0.0004 23 1 2.3167 -4.5321 -0.7636 24 1 2.5637 -4.0338 2.0692 25 1 3.9063 -3.3341 1.1332 26 1 3.0394 -6.2603 1.0869 27 1 4.3820 -5.5606 0.1508 28 1 6.4528 -4.9563 1.3079 29 1 5.4429 -3.7019 2.0658 30 1 6.0273 -4.5759 4.3069 31 1 7.4953 -4.1397 3.3984 32 1 7.8245 -6.5006 2.7596 33 1 8.6622 -5.8002 4.8841 34 1 5.3449 -7.0121 4.4671 35 1 6.3434 -8.2514 3.6686 36 1 4.3168 -7.7221 2.3300 37 1 5.8036 -7.2741 1.4604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000322358731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:18 Heat of formation + Delta-G solvation = -147.210107 kcal Electronic energy + Delta-G solvation = -20157.898329 eV Core-core repulsion = 16868.081424 eV Total energy + Delta-G solvation = -3289.816905 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.50969 -36.93026 -35.21915 -34.64095 -33.92009 -33.06757 -31.82030 -31.09899 -27.33779 -26.12125 -23.86773 -23.32141 -21.36642 -20.03498 -18.96757 -17.57385 -17.44851 -16.30630 -16.04475 -15.54765 -15.21613 -14.78909 -14.69336 -14.38974 -14.11829 -13.84401 -13.60010 -13.22133 -12.93010 -12.37454 -12.07150 -11.96373 -11.54910 -11.39745 -11.37183 -11.26768 -11.22981 -11.05147 -10.58552 -10.54686 -10.29721 -10.25985 -10.15965 -10.01231 -9.24853 -8.98068 -8.47186 -8.40885 -6.69075 -5.30680 2.34967 3.05817 3.14048 3.20584 3.72187 3.94781 4.08513 4.55543 4.58164 4.65527 4.86508 4.89766 4.93411 5.09509 5.21033 5.25682 5.31821 5.42231 5.54142 5.61967 5.65574 5.74882 5.81857 5.88268 5.96220 6.11496 6.20106 6.28032 6.50734 6.81616 6.98419 7.01349 7.33203 7.39009 7.91000 7.99094 8.90228 10.25179 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024375 B = 0.004282 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.431173 B = 6536.697978 C = 7368.571547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.920 3.080 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.020 5.020 8 H 0.101 0.899 9 S 2.717 3.283 10 O -1.008 7.008 11 O -1.005 7.005 12 N -1.138 6.138 13 C 0.130 3.870 14 C 0.050 3.950 15 N -0.536 5.536 16 C 0.050 3.950 17 C -0.149 4.149 18 C 0.103 3.897 19 O -0.568 6.568 20 C -0.110 4.110 21 C 0.059 3.941 22 H 0.290 0.710 23 H 0.400 0.600 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.039 0.961 28 H 0.034 0.966 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.376 0.624 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.050 -10.493 4.464 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.816 3.184 10 O -0.998 6.998 11 O -0.995 6.995 12 N -0.893 5.893 13 C 0.002 3.998 14 C -0.079 4.079 15 N -0.262 5.262 16 C -0.078 4.078 17 C -0.187 4.187 18 C 0.044 3.956 19 O -0.374 6.374 20 C -0.147 4.147 21 C -0.069 4.069 22 H 0.100 0.900 23 H 0.230 0.770 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.223 0.777 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 13.175 -10.777 5.184 17.794 hybrid contribution 1.974 1.264 -1.266 2.664 sum 15.150 -9.514 3.918 18.313 Atomic orbital electron populations 1.69910 1.06774 1.30596 1.40188 1.24744 0.94453 1.00815 0.88518 0.86137 0.80379 0.80491 0.78555 1.18702 1.19645 1.19585 1.30575 1.06064 1.11939 1.66763 0.88039 1.00360 0.72021 0.73204 0.72799 1.93375 1.73061 1.87671 1.45686 1.93361 1.72804 1.87467 1.45885 1.55971 1.55857 1.51183 1.26277 1.20999 0.93461 0.95443 0.89882 1.22312 0.95816 0.98822 0.90941 1.61827 1.17872 1.04188 1.42295 1.22165 0.91426 0.98050 0.96152 1.22328 1.00029 0.96825 0.99545 1.21887 0.92725 0.95006 0.85973 1.86512 1.45125 1.66469 1.39292 1.21537 0.95546 0.98721 0.98934 1.22042 0.98603 0.89960 0.96270 0.89952 0.76959 0.89765 0.92398 0.89972 0.94307 0.94752 0.89237 0.89851 0.91317 0.93227 0.77670 0.90053 0.90997 0.89877 0.94829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.89 13.19 55.43 0.73 -24.16 16 2 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 3 Si 0.92 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -1.02 -27.92 9.72 30.60 0.30 -27.62 16 8 H 0.10 2.53 7.81 -52.48 -0.41 2.12 16 9 S 2.72 71.67 5.02 -107.50 -0.54 71.13 16 10 O -1.01 -29.43 18.02 -57.17 -1.03 -30.46 16 11 O -1.01 -29.43 17.49 -57.17 -1.00 -30.43 16 12 N -1.14 -22.09 6.00 -10.61 -0.06 -22.15 16 13 C 0.13 2.18 6.15 -4.04 -0.02 2.16 16 14 C 0.05 0.65 5.10 -3.82 -0.02 0.63 16 15 N -0.54 -6.44 4.66 -234.67 -1.09 -7.53 16 16 C 0.05 0.55 5.29 -3.84 -0.02 0.53 16 17 C -0.15 -1.43 5.72 -26.65 -0.15 -1.58 16 18 C 0.10 0.95 3.54 -26.60 -0.09 0.86 16 19 O -0.57 -5.36 13.32 -35.23 -0.47 -5.83 16 20 C -0.11 -1.06 5.75 -26.65 -0.15 -1.21 16 21 C 0.06 0.59 5.46 -3.83 -0.02 0.56 16 22 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.40 6.61 8.65 -34.47 -0.30 6.31 16 24 H 0.08 1.56 7.75 -51.93 -0.40 1.16 16 25 H 0.06 0.94 6.43 -51.93 -0.33 0.61 16 26 H 0.08 1.02 7.99 -51.93 -0.41 0.60 16 27 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 1.06 6.21 -51.93 -0.32 0.74 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.38 1.99 9.09 45.56 0.41 2.40 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.77 8.01 -51.94 -0.42 0.35 16 37 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 316.13 15.07 4.76 4.76 Total: -1.00 -35.92 316.13 -8.71 -44.62 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.70 Total: 6.65 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -0.29 Total: -22.08 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.43 Total: -53.84 kcal Atomic # 8 Polarization: -64.23 SS G_CDS: -2.50 Total: -66.73 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 71.67 SS G_CDS: -0.54 Total: 71.13 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.92 -8.71 -44.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322358731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.588 kcal (2) G-P(sol) polarization free energy of solvation -35.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds