Wall clock time and date at job start Tue Mar 31 2020 00:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46900 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46986 * 300.00060 * 3 2 1 6 6 H 1.48497 * 109.47298 * 60.00153 * 3 2 1 7 7 C 1.37870 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00181 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00212 * 359.97438 * 7 2 1 10 10 O 1.42113 * 106.39836 * 66.46153 * 9 7 2 11 11 O 1.42097 * 106.40257 * 293.54677 * 9 7 2 12 12 N 1.65598 * 107.22225 * 179.97438 * 9 7 2 13 13 C 1.46504 * 119.99398 * 65.00007 * 12 9 7 14 14 C 1.53006 * 109.46883 * 164.99895 * 13 12 9 15 15 N 1.46898 * 109.47006 * 180.02562 * 14 13 12 16 16 C 1.46846 * 111.00018 * 294.20961 * 15 14 13 17 17 C 1.53033 * 109.52460 * 174.16134 * 16 15 14 18 18 C 1.53124 * 109.27811 * 59.18358 * 17 16 15 19 19 O 1.42899 * 109.52483 * 182.44119 * 18 17 16 20 20 C 1.53125 * 109.15751 * 302.34732 * 18 17 16 21 21 C 1.46851 * 110.99682 * 170.00115 * 15 14 13 22 22 H 0.97006 * 119.99528 * 359.97438 * 1 2 3 23 23 H 0.96998 * 120.00439 * 245.00244 * 12 9 7 24 24 H 1.09001 * 109.46891 * 45.00329 * 13 12 9 25 25 H 1.08993 * 109.47378 * 284.99701 * 13 12 9 26 26 H 1.09001 * 109.46801 * 300.00349 * 14 13 12 27 27 H 1.09001 * 109.46998 * 59.99945 * 14 13 12 28 28 H 1.09002 * 109.46555 * 294.18280 * 16 15 14 29 29 H 1.09001 * 109.46296 * 54.14881 * 16 15 14 30 30 H 1.08997 * 109.50475 * 299.23909 * 17 16 15 31 31 H 1.09002 * 109.50799 * 179.12007 * 17 16 15 32 32 H 1.08998 * 109.57589 * 62.27874 * 18 17 16 33 33 H 0.96693 * 113.99955 * 299.68250 * 19 18 17 34 34 H 1.09005 * 109.50073 * 297.71107 * 20 18 17 35 35 H 1.08991 * 109.50379 * 177.59621 * 20 18 17 36 36 H 1.08989 * 109.46428 * 305.85572 * 21 15 14 37 37 H 1.09002 * 109.45912 * 65.83533 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4510 -2.7949 -1.2502 11 8 0.4519 -2.7955 1.2493 12 7 2.2483 -3.9354 -0.0019 13 6 3.1402 -4.1092 1.1472 14 6 3.8055 -5.4851 1.0729 15 7 4.6994 -5.6597 2.2255 16 6 5.8246 -4.7180 2.1662 17 6 6.6513 -4.8275 3.4494 18 6 7.1686 -6.2612 3.5966 19 8 7.8937 -6.3838 4.8218 20 6 5.9795 -7.2259 3.6070 21 6 5.1722 -7.0468 2.3193 22 1 -0.4850 0.8401 0.0004 23 1 2.3167 -4.5321 -0.7636 24 1 2.5637 -4.0338 2.0692 25 1 3.9063 -3.3341 1.1332 26 1 3.0394 -6.2603 1.0869 27 1 4.3820 -5.5606 0.1508 28 1 6.4528 -4.9563 1.3079 29 1 5.4429 -3.7019 2.0658 30 1 6.0273 -4.5759 4.3069 31 1 7.4953 -4.1397 3.3984 32 1 7.8245 -6.5006 2.7596 33 1 8.6622 -5.8002 4.8841 34 1 5.3449 -7.0121 4.4671 35 1 6.3434 -8.2514 3.6686 36 1 4.3168 -7.7221 2.3300 37 1 5.8036 -7.2741 1.4604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000322358731.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:17 Heat of formation + Delta-G solvation = -180.210881 kcal Electronic energy + Delta-G solvation = -20159.329350 eV Core-core repulsion = 16868.081424 eV Total energy + Delta-G solvation = -3291.247926 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.33168 -37.83115 -37.36640 -36.13992 -35.98202 -35.15097 -32.81688 -31.87599 -28.51652 -28.25505 -24.84196 -24.11813 -22.47271 -21.02514 -20.77962 -19.37762 -18.29022 -18.17362 -17.29881 -17.07318 -16.51818 -16.24451 -15.91905 -15.60424 -15.40652 -15.11018 -14.91095 -14.51702 -14.00450 -13.79913 -13.34832 -13.18047 -13.02420 -12.90484 -12.87040 -12.51297 -12.44226 -12.35540 -12.27492 -12.18025 -12.10109 -11.88060 -11.27127 -11.25771 -10.99010 -10.74370 -10.14859 -9.29802 -8.74804 -7.47686 0.35546 1.34335 1.35216 1.52663 2.21275 2.58744 2.73473 3.17259 3.31598 3.71541 3.77859 3.84388 3.96503 4.13147 4.20594 4.27635 4.40279 4.50590 4.51573 4.59872 4.62185 4.74548 4.86740 4.90020 4.96124 5.02388 5.07796 5.17964 5.19813 5.32422 5.37749 5.90238 6.05385 6.14502 6.41605 6.79205 6.90581 8.22044 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024375 B = 0.004282 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.431173 B = 6536.697978 C = 7368.571547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.069 3.931 3 Si 0.992 3.008 4 H -0.246 1.246 5 H -0.260 1.260 6 H -0.260 1.260 7 C -1.039 5.039 8 H 0.121 0.879 9 S 2.722 3.278 10 O -1.044 7.044 11 O -1.044 7.044 12 N -1.120 6.120 13 C 0.124 3.876 14 C 0.060 3.940 15 N -0.553 5.553 16 C 0.046 3.954 17 C -0.144 4.144 18 C 0.105 3.895 19 O -0.585 6.585 20 C -0.110 4.110 21 C 0.061 3.939 22 H 0.299 0.701 23 H 0.416 0.584 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.394 0.606 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.711 -10.474 4.215 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.810 3.190 4 H -0.169 1.169 5 H -0.184 1.184 6 H -0.184 1.184 7 C -1.173 5.173 8 H 0.139 0.861 9 S 2.823 3.177 10 O -1.034 7.034 11 O -1.034 7.034 12 N -0.880 5.880 13 C -0.003 4.003 14 C -0.069 4.069 15 N -0.279 5.279 16 C -0.081 4.081 17 C -0.182 4.182 18 C 0.046 3.954 19 O -0.393 6.393 20 C -0.148 4.148 21 C -0.066 4.066 22 H 0.109 0.891 23 H 0.250 0.750 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.243 0.757 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.847 -10.788 4.933 19.795 hybrid contribution 1.183 1.172 -1.145 2.021 sum 17.030 -9.617 3.788 19.921 Atomic orbital electron populations 1.70003 1.08817 1.32271 1.41507 1.26033 0.95374 1.05455 0.87543 0.85081 0.79549 0.75073 0.79314 1.16868 1.18438 1.18432 1.30917 1.07201 1.12557 1.66597 0.86099 0.99810 0.72537 0.73973 0.71418 1.93314 1.74834 1.88433 1.46845 1.93308 1.74571 1.88238 1.47259 1.55274 1.55098 1.49847 1.27820 1.21184 0.92857 0.98561 0.87684 1.22146 0.96306 0.96146 0.92315 1.61778 1.18552 1.05657 1.41882 1.22206 0.91407 0.97134 0.97379 1.22287 1.00125 0.97818 0.97994 1.21864 0.92751 0.94319 0.86425 1.86476 1.46115 1.67243 1.39471 1.21534 0.95566 0.99607 0.98055 1.22076 0.99084 0.88620 0.96859 0.89125 0.75000 0.92027 0.91608 0.89390 0.92438 0.93375 0.90591 0.91860 0.89399 0.91714 0.75666 0.91956 0.89887 0.89419 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.50 13.19 21.45 0.28 -53.22 16 2 C 0.07 3.81 5.46 84.65 0.46 4.27 16 3 Si 0.99 40.95 29.54 68.60 2.03 42.98 16 4 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 5 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 7 C -1.04 -56.74 9.72 67.73 0.66 -56.08 16 8 H 0.12 5.89 7.81 -2.91 -0.02 5.87 16 9 S 2.72 145.99 5.02 -56.49 -0.28 145.71 16 10 O -1.04 -62.31 18.02 -128.00 -2.31 -64.62 16 11 O -1.04 -62.97 17.49 -128.00 -2.24 -65.21 16 12 N -1.12 -43.02 6.00 -187.48 -1.12 -44.14 16 13 C 0.12 4.09 6.15 86.38 0.53 4.63 16 14 C 0.06 1.45 5.10 86.31 0.44 1.89 16 15 N -0.55 -12.37 4.66 -896.37 -4.17 -16.54 16 16 C 0.05 0.93 5.29 86.32 0.46 1.39 16 17 C -0.14 -2.51 5.72 30.65 0.18 -2.33 16 18 C 0.11 1.70 3.54 30.68 0.11 1.81 16 19 O -0.58 -9.87 13.32 -148.98 -1.99 -11.85 16 20 C -0.11 -1.93 5.75 30.65 0.18 -1.76 16 21 C 0.06 1.07 5.46 86.32 0.47 1.54 16 22 H 0.30 15.98 8.31 -92.70 -0.77 15.21 16 23 H 0.42 13.31 8.65 -96.75 -0.84 12.47 16 24 H 0.06 2.32 7.75 -2.39 -0.02 2.30 16 25 H 0.07 2.07 6.43 -2.39 -0.02 2.06 16 26 H 0.09 2.02 7.99 -2.39 -0.02 2.00 16 27 H 0.06 1.19 8.12 -2.39 -0.02 1.17 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 1.71 6.21 -2.39 -0.01 1.69 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.39 3.27 9.09 -74.06 -0.67 2.60 16 34 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.44 8.01 -2.39 -0.02 1.42 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -78.16 316.13 -6.75 -84.91 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -0.42 Total: 26.62 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 3.48 Total: -44.64 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -5.02 Total: -113.90 kcal Atomic # 8 Polarization: -135.15 SS G_CDS: -6.53 Total: -141.68 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: 145.99 SS G_CDS: -0.28 Total: 145.71 kcal Total: -78.16 -6.75 -84.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322358731.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.305 kcal (2) G-P(sol) polarization free energy of solvation -78.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds