Wall clock time and date at job start Tue Mar 31 2020 00:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21609 * 120.00430 * 179.86569 * 13 12 11 15 15 C 1.47423 * 119.99889 * 359.87004 * 13 12 11 16 16 N 1.36063 * 126.44851 * 359.69121 * 15 13 12 17 17 C 1.29933 * 108.47914 * 179.82153 * 16 15 13 18 18 O 1.34061 * 109.24047 * 0.44241 * 17 16 15 19 19 C 1.34251 * 108.22418 * 359.71875 * 18 17 16 20 20 C 1.50701 * 126.52393 * 180.02562 * 19 18 17 21 21 C 1.53002 * 117.49653 * 8.60414 * 20 19 18 22 22 C 1.53002 * 60.00137 * 252.50779 * 21 20 19 23 23 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 26 26 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 27 27 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 28 28 H 1.08000 * 125.38130 * 180.16227 * 17 16 15 29 29 H 1.09005 * 115.55207 * 154.30799 * 20 19 18 30 30 H 1.09002 * 117.50034 * 359.97438 * 21 20 19 31 31 H 1.09003 * 117.50160 * 145.01993 * 21 20 19 32 32 H 1.08998 * 117.49998 * 252.51735 * 22 21 20 33 33 H 1.08999 * 117.51919 * 107.47773 * 22 21 20 34 34 H 1.08993 * 113.76952 * 221.15022 * 23 12 11 35 35 H 1.08993 * 113.76905 * 89.74994 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3861 -6.4998 0.8977 15 6 -0.1982 -5.7234 2.4247 16 7 -0.8835 -4.7421 3.0718 17 6 -1.7170 -5.2985 3.8989 18 8 -1.5927 -6.6311 3.8216 19 6 -0.6505 -6.9126 2.9076 20 6 -0.1831 -8.2845 2.4945 21 6 -0.9697 -9.4868 3.0205 22 6 0.4221 -9.1803 3.5772 23 6 2.1609 -3.7402 0.0462 24 1 -0.4850 0.8401 0.0004 25 1 -0.3474 -1.7969 -1.0267 26 1 1.3275 -2.4975 2.2141 27 1 -0.3215 -2.8326 1.5249 28 1 -2.3987 -4.7708 4.5494 29 1 0.2347 -8.3562 1.4903 30 1 -1.8250 -9.2856 3.6655 31 1 -1.0696 -10.3499 2.3622 32 1 1.2379 -9.8416 3.2851 33 1 0.4826 -8.7773 4.5881 34 1 2.2027 -4.2899 -0.8940 35 1 3.1456 -3.5472 0.4717 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329046395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:40 Heat of formation + Delta-G solvation = 6.533790 kcal Electronic energy + Delta-G solvation = -21556.564680 eV Core-core repulsion = 18137.970659 eV Total energy + Delta-G solvation = -3418.594021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 4.93 seconds Orbital eigenvalues (eV) -43.30687 -39.31079 -37.49653 -37.04657 -34.62094 -33.84079 -32.15721 -30.23187 -28.63378 -25.67124 -25.13291 -23.76746 -23.30961 -22.53508 -20.79102 -20.03843 -18.73756 -17.54178 -16.96788 -16.66724 -16.27040 -15.70737 -15.28822 -15.04298 -14.67876 -14.50726 -14.07097 -13.57496 -13.06583 -12.58931 -12.45813 -12.19560 -11.96669 -11.76289 -11.49672 -11.21510 -11.08764 -11.05187 -11.00722 -10.79310 -10.51716 -10.38419 -10.19432 -9.71943 -9.22628 -8.71537 -8.68775 -8.32148 -7.76279 -6.32738 -4.42915 1.21257 2.31277 2.58631 3.20279 3.25700 3.27931 3.51969 3.61686 3.86688 4.17569 4.23834 4.37862 4.68750 4.78759 4.89252 5.03052 5.16638 5.42699 5.55815 5.64583 5.66458 5.77820 5.90055 6.02081 6.12016 6.20068 6.26308 6.44218 6.67960 6.72742 6.94673 7.18172 7.64593 7.68892 7.88765 8.45828 8.59187 8.75265 9.27525 9.49261 10.74108 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033338 B = 0.004418 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.679392 B = 6336.450861 C = 6777.376395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.235 3.765 10 O -0.573 6.573 11 C 0.095 3.905 12 N -0.613 5.613 13 C 0.609 3.391 14 O -0.561 6.561 15 C -0.047 4.047 16 N -0.446 5.446 17 C 0.164 3.836 18 O -0.204 6.204 19 C 0.055 3.945 20 C -0.076 4.076 21 C -0.171 4.171 22 C -0.159 4.159 23 C 0.113 3.887 24 H 0.273 0.727 25 H 0.392 0.608 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.254 0.746 29 H 0.155 0.845 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 -11.297 8.504 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.576 4.576 8 H 0.089 0.911 9 C 0.193 3.807 10 O -0.385 6.385 11 C -0.027 4.027 12 N -0.344 5.344 13 C 0.397 3.603 14 O -0.442 6.442 15 C -0.167 4.167 16 N -0.175 5.175 17 C -0.064 4.064 18 O -0.091 6.091 19 C -0.001 4.001 20 C -0.095 4.095 21 C -0.208 4.208 22 C -0.196 4.196 23 C -0.008 4.008 24 H 0.083 0.917 25 H 0.246 0.754 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.269 0.731 29 H 0.173 0.827 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.068 -11.747 8.084 14.587 hybrid contribution -0.177 1.011 0.558 1.168 sum -3.245 -10.737 8.642 14.160 Atomic orbital electron populations 1.69408 1.06136 1.28157 1.49911 1.25059 0.95007 0.99766 0.93135 0.86405 0.79499 0.81753 0.78926 1.21040 1.19929 1.19899 1.21448 0.93837 0.89980 1.52344 0.91147 1.19903 0.85687 0.91023 0.84086 1.86047 1.47073 1.49891 1.55478 1.24300 1.01026 0.76075 1.01335 1.50042 1.39187 1.04841 1.40373 1.16338 0.81098 0.82510 0.80321 1.90694 1.56468 1.39537 1.57549 1.21548 1.03264 0.88446 1.03415 1.70938 1.06659 1.32676 1.07209 1.28057 1.00873 0.76781 1.00726 1.84279 1.47403 1.28411 1.49014 1.22509 0.90310 0.96526 0.90736 1.20723 1.04878 0.82655 1.01198 1.23079 0.95508 0.98467 1.03777 1.23054 0.96972 1.01697 0.97924 1.23518 0.93279 0.92853 0.91166 0.91699 0.75382 0.90381 0.90273 0.73073 0.82724 0.88238 0.87644 0.87428 0.88562 0.90966 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.18 11.20 55.43 0.62 -22.56 16 2 C 0.07 1.85 5.40 -17.82 -0.10 1.76 16 3 Si 0.91 19.73 29.54 -169.99 -5.02 14.71 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.54 -13.80 8.61 -34.44 -0.30 -14.09 16 8 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.23 5.84 1.40 -90.84 -0.13 5.71 16 10 O -0.57 -15.22 13.49 -35.23 -0.48 -15.70 16 11 C 0.09 2.21 7.30 -2.84 -0.02 2.19 16 12 N -0.61 -14.01 3.61 -179.37 -0.65 -14.66 16 13 C 0.61 13.47 8.05 -12.52 -0.10 13.37 16 14 O -0.56 -12.84 15.61 5.27 0.08 -12.75 16 15 C -0.05 -0.90 6.94 -83.02 -0.58 -1.47 16 16 N -0.45 -7.99 9.74 -11.48 -0.11 -8.10 16 17 C 0.16 2.14 13.19 51.96 0.69 2.82 16 18 O -0.20 -2.80 10.50 6.50 0.07 -2.73 16 19 C 0.06 0.88 6.90 -35.08 -0.24 0.64 16 20 C -0.08 -1.04 5.61 -91.77 -0.51 -1.55 16 21 C -0.17 -1.71 10.18 -26.73 -0.27 -1.98 16 22 C -0.16 -1.69 10.23 -26.73 -0.27 -1.96 16 23 C 0.11 2.56 8.23 -2.96 -0.02 2.54 16 24 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 25 H 0.39 10.46 6.60 45.56 0.30 10.76 16 26 H 0.08 1.79 8.09 -51.93 -0.42 1.37 16 27 H 0.08 1.92 7.49 -51.93 -0.39 1.53 16 28 H 0.25 1.84 8.06 -52.49 -0.42 1.42 16 29 H 0.16 2.34 6.66 -51.93 -0.35 2.00 16 30 H 0.10 0.95 8.00 -51.93 -0.42 0.53 16 31 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 35 H 0.09 1.80 8.09 -51.93 -0.42 1.38 16 LS Contribution 308.72 15.07 4.65 4.65 Total: -1.00 -30.47 308.72 -6.04 -36.51 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -3.35 Total: 12.67 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -1.86 Total: 7.97 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -0.14 Total: -45.33 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.32 Total: -31.18 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.47 -6.04 -36.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329046395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.045 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.93 seconds