Wall clock time and date at job start Tue Mar 31 2020 00:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21609 * 120.00430 * 179.86569 * 13 12 11 15 15 C 1.47423 * 119.99889 * 359.87004 * 13 12 11 16 16 N 1.36063 * 126.44851 * 359.69121 * 15 13 12 17 17 C 1.29933 * 108.47914 * 179.82153 * 16 15 13 18 18 O 1.34061 * 109.24047 * 0.44241 * 17 16 15 19 19 C 1.34251 * 108.22418 * 359.71875 * 18 17 16 20 20 C 1.50701 * 126.52393 * 180.02562 * 19 18 17 21 21 C 1.53002 * 117.49653 * 8.60414 * 20 19 18 22 22 C 1.53002 * 60.00137 * 252.50779 * 21 20 19 23 23 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 26 26 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 27 27 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 28 28 H 1.08000 * 125.38130 * 180.16227 * 17 16 15 29 29 H 1.09005 * 115.55207 * 154.30799 * 20 19 18 30 30 H 1.09002 * 117.50034 * 359.97438 * 21 20 19 31 31 H 1.09003 * 117.50160 * 145.01993 * 21 20 19 32 32 H 1.08998 * 117.49998 * 252.51735 * 22 21 20 33 33 H 1.08999 * 117.51919 * 107.47773 * 22 21 20 34 34 H 1.08993 * 113.76952 * 221.15022 * 23 12 11 35 35 H 1.08993 * 113.76905 * 89.74994 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3861 -6.4998 0.8977 15 6 -0.1982 -5.7234 2.4247 16 7 -0.8835 -4.7421 3.0718 17 6 -1.7170 -5.2985 3.8989 18 8 -1.5927 -6.6311 3.8216 19 6 -0.6505 -6.9126 2.9076 20 6 -0.1831 -8.2845 2.4945 21 6 -0.9697 -9.4868 3.0205 22 6 0.4221 -9.1803 3.5772 23 6 2.1609 -3.7402 0.0462 24 1 -0.4850 0.8401 0.0004 25 1 -0.3474 -1.7969 -1.0267 26 1 1.3275 -2.4975 2.2141 27 1 -0.3215 -2.8326 1.5249 28 1 -2.3987 -4.7708 4.5494 29 1 0.2347 -8.3562 1.4903 30 1 -1.8250 -9.2856 3.6655 31 1 -1.0696 -10.3499 2.3622 32 1 1.2379 -9.8416 3.2851 33 1 0.4826 -8.7773 4.5881 34 1 2.2027 -4.2899 -0.8940 35 1 3.1456 -3.5472 0.4717 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329046395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:38 Heat of formation + Delta-G solvation = -17.088487 kcal Electronic energy + Delta-G solvation = -21557.589019 eV Core-core repulsion = 18137.970659 eV Total energy + Delta-G solvation = -3419.618360 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -44.48810 -41.09683 -39.09595 -38.15166 -35.94707 -35.71409 -34.15260 -31.51293 -30.37788 -27.48755 -27.00039 -24.98521 -24.59412 -23.35177 -22.13619 -21.52946 -20.35431 -19.40558 -18.50129 -17.88396 -17.67878 -17.24451 -16.88637 -16.35158 -16.21952 -15.99883 -15.78521 -14.98457 -14.67783 -14.36722 -14.12858 -13.79976 -13.41928 -13.36606 -12.88354 -12.75106 -12.52189 -12.44319 -12.26337 -12.22460 -12.06534 -11.88443 -11.68665 -11.31373 -11.03878 -10.64993 -10.27083 -9.93111 -9.53240 -8.25356 -6.43206 -0.03577 1.06148 1.44230 1.48856 1.50144 1.58061 1.90073 2.19157 2.41663 2.81714 2.95767 3.05202 3.31082 3.53226 3.74465 3.81001 3.96033 4.09502 4.20971 4.39951 4.44350 4.57265 4.62812 4.67392 4.79113 4.85456 4.92979 4.98451 5.09265 5.14938 5.19130 5.25966 5.72470 5.92159 6.44968 6.61987 6.70366 7.04880 7.29812 7.42119 8.81041 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.033338 B = 0.004418 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.679392 B = 6336.450861 C = 6777.376395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.033 3.967 3 Si 0.971 3.029 4 H -0.282 1.282 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.559 4.559 8 H 0.074 0.926 9 C 0.217 3.783 10 O -0.586 6.586 11 C 0.115 3.885 12 N -0.622 5.622 13 C 0.602 3.398 14 O -0.579 6.579 15 C -0.097 4.097 16 N -0.494 5.494 17 C 0.193 3.807 18 O -0.193 6.193 19 C 0.077 3.923 20 C -0.117 4.117 21 C -0.143 4.143 22 C -0.147 4.147 23 C 0.115 3.885 24 H 0.276 0.724 25 H 0.387 0.613 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.308 0.692 29 H 0.132 0.868 30 H 0.109 0.891 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.022 -11.946 10.267 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.168 4.168 3 Si 0.796 3.204 4 H -0.207 1.207 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.597 4.597 8 H 0.092 0.908 9 C 0.176 3.824 10 O -0.398 6.398 11 C -0.008 4.008 12 N -0.354 5.354 13 C 0.392 3.608 14 O -0.461 6.461 15 C -0.215 4.215 16 N -0.222 5.222 17 C -0.035 4.035 18 O -0.080 6.080 19 C 0.020 3.980 20 C -0.135 4.135 21 C -0.179 4.179 22 C -0.184 4.184 23 C -0.006 4.006 24 H 0.085 0.915 25 H 0.241 0.759 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.323 0.677 29 H 0.150 0.850 30 H 0.128 0.872 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.594 -12.410 9.845 16.243 hybrid contribution -0.088 1.124 0.051 1.128 sum -3.681 -11.286 9.896 15.455 Atomic orbital electron populations 1.69486 1.07232 1.28979 1.49931 1.25791 0.95777 1.02713 0.92529 0.85402 0.78246 0.77801 0.78936 1.20686 1.19275 1.19791 1.21690 0.94192 0.90686 1.53161 0.90769 1.20168 0.85851 0.91935 0.84418 1.86033 1.47534 1.49760 1.56464 1.23957 0.99918 0.76478 1.00414 1.50052 1.39512 1.05078 1.40709 1.16821 0.81490 0.81819 0.80648 1.90659 1.57345 1.39704 1.58443 1.21244 1.04841 0.90330 1.05056 1.70849 1.08636 1.33533 1.09221 1.29231 0.99128 0.76335 0.98823 1.84331 1.46520 1.28859 1.48249 1.22796 0.89130 0.96565 0.89499 1.20730 1.08504 0.82960 1.01342 1.23226 0.95314 0.96545 1.02836 1.23195 0.98133 1.00108 0.96916 1.23518 0.93894 0.91885 0.91349 0.91464 0.75900 0.90335 0.91704 0.67738 0.85001 0.87235 0.85530 0.85980 0.88073 0.91550 0.87581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.74 11.20 21.45 0.24 -47.50 16 2 C 0.03 1.65 5.40 84.66 0.46 2.11 16 3 Si 0.97 40.12 29.54 68.60 2.03 42.15 16 4 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.56 -28.92 8.61 25.60 0.22 -28.70 16 8 H 0.07 3.68 7.81 -2.91 -0.02 3.66 16 9 C 0.22 11.07 1.40 -10.88 -0.02 11.05 16 10 O -0.59 -32.15 13.49 -148.98 -2.01 -34.16 16 11 C 0.11 5.51 7.30 86.45 0.63 6.14 16 12 N -0.62 -29.28 3.61 -843.49 -3.05 -32.33 16 13 C 0.60 27.46 8.05 86.66 0.70 28.16 16 14 O -0.58 -27.38 15.61 -4.06 -0.06 -27.45 16 15 C -0.10 -3.76 6.94 40.41 0.28 -3.48 16 16 N -0.49 -17.50 9.74 -305.14 -2.97 -20.48 16 17 C 0.19 4.56 13.19 130.52 1.72 6.28 16 18 O -0.19 -4.81 10.50 0.34 0.00 -4.80 16 19 C 0.08 2.41 6.90 25.19 0.17 2.59 16 20 C -0.12 -3.07 5.61 -11.54 -0.06 -3.14 16 21 C -0.14 -2.42 10.18 30.60 0.31 -2.11 16 22 C -0.15 -2.76 10.23 30.60 0.31 -2.45 16 23 C 0.12 5.34 8.23 86.49 0.71 6.05 16 24 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 25 H 0.39 21.38 6.60 -74.06 -0.49 20.90 16 26 H 0.08 3.68 8.09 -2.39 -0.02 3.66 16 27 H 0.06 3.26 7.49 -2.38 -0.02 3.24 16 28 H 0.31 3.13 8.06 -2.91 -0.02 3.10 16 29 H 0.13 4.09 6.66 -2.38 -0.02 4.08 16 30 H 0.11 1.68 8.00 -2.39 -0.02 1.66 16 31 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 35 H 0.11 4.42 8.09 -2.39 -0.02 4.40 16 Total: -1.00 -67.59 308.72 0.26 -67.33 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.65 Total: 34.72 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: 5.44 Total: 22.51 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -5.78 Total: -100.30 kcal Atomic # 8 Polarization: -64.34 SS G_CDS: -2.07 Total: -66.41 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -67.59 0.26 -67.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329046395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.237 kcal (2) G-P(sol) polarization free energy of solvation -67.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds