Wall clock time and date at job start Tue Mar 31 2020 00:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42904 * 112.94304 * 50.61622 * 9 7 2 11 11 C 1.53940 * 113.74765 * 279.01867 * 9 7 2 12 12 N 1.47807 * 86.04034 * 222.08636 * 11 9 7 13 13 C 1.34781 * 134.45550 * 204.64597 * 12 11 9 14 14 O 1.21579 * 119.99812 * 179.86757 * 13 12 11 15 15 C 1.47506 * 120.00130 * 359.86524 * 13 12 11 16 16 C 1.36823 * 126.94741 * 179.70801 * 15 13 12 17 17 C 1.41268 * 103.84811 * 179.90643 * 16 15 13 18 18 C 1.50697 * 126.70160 * 180.12872 * 17 16 15 19 19 C 1.53004 * 117.50330 * 343.87591 * 18 17 16 20 20 C 1.52994 * 60.00191 * 252.51541 * 19 18 17 21 21 N 1.30120 * 106.58987 * 0.36037 * 17 16 15 22 22 O 1.20893 * 111.98456 * 359.76700 * 21 17 16 23 23 C 1.47571 * 91.05019 * 24.54809 * 12 11 9 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 0.96703 * 113.99734 * 309.65903 * 10 9 7 26 26 H 1.08997 * 113.76880 * 336.35532 * 11 9 7 27 27 H 1.09008 * 113.76856 * 107.74127 * 11 9 7 28 28 H 1.08004 * 128.07540 * 0.02562 * 16 15 13 29 29 H 1.09003 * 115.54912 * 129.58551 * 18 17 16 30 30 H 1.09005 * 117.49124 * 0.02562 * 19 18 17 31 31 H 1.08998 * 117.50161 * 145.01753 * 19 18 17 32 32 H 1.09005 * 117.49693 * 252.51211 * 20 19 18 33 33 H 1.09004 * 117.52550 * 107.47787 * 20 19 18 34 34 H 1.09004 * 113.77444 * 221.15143 * 23 12 11 35 35 H 1.09004 * 113.87147 * 89.76886 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5661 -1.0073 11 6 0.7559 -2.9227 1.4000 12 7 1.1919 -4.2852 1.0284 13 6 0.8425 -5.5273 1.4180 14 8 1.3862 -6.4952 0.9224 15 6 -0.1993 -5.7122 2.4456 16 6 -0.6655 -6.8999 2.9398 17 6 -1.6398 -6.5131 3.8866 18 6 -2.4777 -7.4281 4.7420 19 6 -2.5536 -8.9014 4.3363 20 6 -3.7630 -7.9876 4.1290 21 7 -1.6761 -5.2124 3.8723 22 8 -0.8880 -4.7464 3.0828 23 6 2.1610 -3.7398 0.0582 24 1 -0.4850 0.8400 0.0004 25 1 -0.3471 -1.8018 -1.0246 26 1 1.3268 -2.4870 2.2200 27 1 -0.3218 -2.8255 1.5318 28 1 -0.3586 -7.8998 2.6703 29 1 -2.4868 -7.1981 5.8075 30 1 -1.9971 -9.2088 3.4509 31 1 -2.6124 -9.6410 5.1348 32 1 -4.6177 -8.1260 4.7913 33 1 -4.0029 -7.6935 3.1072 34 1 2.2032 -4.2939 -0.8796 35 1 3.1463 -3.5443 0.4813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329408144.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:51 Heat of formation + Delta-G solvation = 43.546115 kcal Electronic energy + Delta-G solvation = -21300.681804 eV Core-core repulsion = 17883.692758 eV Total energy + Delta-G solvation = -3416.989046 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.85894 -39.56958 -37.78142 -37.50495 -34.06902 -33.24449 -32.25386 -31.86633 -28.77348 -25.71421 -25.36501 -24.69717 -23.40862 -22.43601 -21.74791 -19.87447 -18.79114 -17.75268 -17.52778 -17.02563 -16.21617 -15.87888 -15.36062 -15.01734 -14.73673 -14.58316 -14.19242 -13.70343 -13.20155 -12.71294 -12.61940 -12.26084 -12.09289 -11.86536 -11.75327 -11.60440 -11.28691 -11.13323 -11.07229 -10.66251 -10.53234 -10.33593 -10.04405 -9.86670 -9.55291 -9.39636 -8.80680 -8.52806 -8.01559 -6.41534 -4.52231 1.01401 2.04392 2.84062 3.13573 3.23300 3.26503 3.35787 3.40580 3.45986 3.92570 4.17455 4.46243 4.56447 4.74352 4.83448 4.87752 5.01691 5.28222 5.31924 5.40896 5.49922 5.58829 5.78368 5.82900 5.87664 5.93469 6.04165 6.28490 6.44244 6.48524 6.65326 7.02923 7.60748 7.77018 8.11775 8.14739 8.44910 8.51417 9.18953 9.37895 10.65605 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030461 B = 0.004144 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.995086 B = 6754.992330 C = 7265.536223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.239 3.761 10 O -0.572 6.572 11 C 0.077 3.923 12 N -0.616 5.616 13 C 0.610 3.390 14 O -0.539 6.539 15 C -0.056 4.056 16 C -0.165 4.165 17 C 0.036 3.964 18 C -0.084 4.084 19 C -0.164 4.164 20 C -0.163 4.163 21 N -0.346 5.346 22 O 0.127 5.873 23 C 0.115 3.885 24 H 0.273 0.727 25 H 0.393 0.607 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.179 0.821 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.942 -10.500 7.672 13.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.092 0.908 9 C 0.197 3.803 10 O -0.384 6.384 11 C -0.045 4.045 12 N -0.348 5.348 13 C 0.396 3.604 14 O -0.418 6.418 15 C -0.122 4.122 16 C -0.188 4.188 17 C -0.121 4.121 18 C -0.103 4.103 19 C -0.201 4.201 20 C -0.201 4.201 21 N -0.045 5.045 22 O 0.054 5.946 23 C -0.006 4.006 24 H 0.084 0.916 25 H 0.248 0.752 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.197 0.803 29 H 0.142 0.858 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.295 -10.697 7.999 14.030 hybrid contribution 0.361 0.754 0.062 0.838 sum -3.934 -9.943 8.061 13.391 Atomic orbital electron populations 1.69407 1.06172 1.28199 1.49728 1.25070 0.95024 0.99921 0.92980 0.86275 0.80075 0.82277 0.77878 1.19420 1.20641 1.20656 1.21490 0.93973 0.89724 1.52477 0.90842 1.19841 0.85662 0.91233 0.83530 1.86056 1.47067 1.49879 1.55396 1.24572 1.00960 0.76115 1.02854 1.50258 1.39428 1.04602 1.40492 1.16191 0.80957 0.83057 0.80205 1.90800 1.55283 1.39406 1.56360 1.24422 0.99350 0.88431 0.99973 1.22675 0.98055 0.99920 0.98153 1.22601 0.99306 0.90575 0.99627 1.20072 0.99113 0.93235 0.97900 1.23053 1.01648 0.91516 1.03880 1.23038 0.91636 1.02767 1.02665 1.73714 1.09506 1.12155 1.09161 1.85103 1.37330 1.33442 1.38773 1.23591 0.93283 0.92702 0.90988 0.91642 0.75187 0.89339 0.90486 0.80325 0.85806 0.88062 0.87734 0.87853 0.88370 0.90535 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.34 11.21 55.43 0.62 -21.72 16 2 C 0.07 1.78 5.40 -17.82 -0.10 1.69 16 3 Si 0.91 19.13 29.54 -169.99 -5.02 14.11 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.54 -13.11 8.61 -34.44 -0.30 -13.41 16 8 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.24 5.57 1.40 -90.85 -0.13 5.44 16 10 O -0.57 -14.34 13.49 -35.23 -0.48 -14.82 16 11 C 0.08 1.65 7.39 -2.84 -0.02 1.63 16 12 N -0.62 -12.85 3.61 -179.37 -0.65 -13.50 16 13 C 0.61 12.43 8.05 -12.48 -0.10 12.33 16 14 O -0.54 -11.87 17.64 5.30 0.09 -11.78 16 15 C -0.06 -1.00 7.22 -36.32 -0.26 -1.26 16 16 C -0.17 -2.50 10.26 -38.94 -0.40 -2.90 16 17 C 0.04 0.53 6.94 -82.17 -0.57 -0.04 16 18 C -0.08 -0.90 6.33 -91.77 -0.58 -1.49 16 19 C -0.16 -1.35 10.04 -26.73 -0.27 -1.61 16 20 C -0.16 -1.47 10.23 -26.73 -0.27 -1.74 16 21 N -0.35 -5.92 12.04 33.52 0.40 -5.51 16 22 O 0.13 2.32 9.87 15.53 0.15 2.47 16 23 C 0.12 2.40 8.23 -2.97 -0.02 2.38 16 24 H 0.27 6.49 8.31 -40.82 -0.34 6.16 16 25 H 0.39 9.98 6.61 45.56 0.30 10.29 16 26 H 0.09 1.81 8.09 -51.93 -0.42 1.39 16 27 H 0.08 1.69 7.60 -51.92 -0.39 1.30 16 28 H 0.18 2.30 7.61 -52.48 -0.40 1.90 16 29 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.10 0.84 7.33 -51.93 -0.38 0.46 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 LS Contribution 310.97 15.07 4.69 4.69 Total: -1.00 -27.64 310.97 -6.58 -34.22 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -3.37 Total: 10.85 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -3.02 Total: 1.00 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.38 Total: -40.74 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.23 Total: -24.13 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.64 -6.58 -34.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329408144.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.762 kcal (2) G-P(sol) polarization free energy of solvation -27.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds