Wall clock time and date at job start Tue Mar 31 2020 00:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42904 * 112.94304 * 50.61622 * 9 7 2 11 11 C 1.53940 * 113.74765 * 279.01867 * 9 7 2 12 12 N 1.47807 * 86.04034 * 222.08636 * 11 9 7 13 13 C 1.34781 * 134.45550 * 204.64597 * 12 11 9 14 14 O 1.21579 * 119.99812 * 179.86757 * 13 12 11 15 15 C 1.47506 * 120.00130 * 359.86524 * 13 12 11 16 16 C 1.36823 * 126.94741 * 179.70801 * 15 13 12 17 17 C 1.41268 * 103.84811 * 179.90643 * 16 15 13 18 18 C 1.50697 * 126.70160 * 180.12872 * 17 16 15 19 19 C 1.53004 * 117.50330 * 343.87591 * 18 17 16 20 20 C 1.52994 * 60.00191 * 252.51541 * 19 18 17 21 21 N 1.30120 * 106.58987 * 0.36037 * 17 16 15 22 22 O 1.20893 * 111.98456 * 359.76700 * 21 17 16 23 23 C 1.47571 * 91.05019 * 24.54809 * 12 11 9 24 24 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 25 25 H 0.96703 * 113.99734 * 309.65903 * 10 9 7 26 26 H 1.08997 * 113.76880 * 336.35532 * 11 9 7 27 27 H 1.09008 * 113.76856 * 107.74127 * 11 9 7 28 28 H 1.08004 * 128.07540 * 0.02562 * 16 15 13 29 29 H 1.09003 * 115.54912 * 129.58551 * 18 17 16 30 30 H 1.09005 * 117.49124 * 0.02562 * 19 18 17 31 31 H 1.08998 * 117.50161 * 145.01753 * 19 18 17 32 32 H 1.09005 * 117.49693 * 252.51211 * 20 19 18 33 33 H 1.09004 * 117.52550 * 107.47787 * 20 19 18 34 34 H 1.09004 * 113.77444 * 221.15143 * 23 12 11 35 35 H 1.09004 * 113.87147 * 89.76886 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5661 -1.0073 11 6 0.7559 -2.9227 1.4000 12 7 1.1919 -4.2852 1.0284 13 6 0.8425 -5.5273 1.4180 14 8 1.3862 -6.4952 0.9224 15 6 -0.1993 -5.7122 2.4456 16 6 -0.6655 -6.8999 2.9398 17 6 -1.6398 -6.5131 3.8866 18 6 -2.4777 -7.4281 4.7420 19 6 -2.5536 -8.9014 4.3363 20 6 -3.7630 -7.9876 4.1290 21 7 -1.6761 -5.2124 3.8723 22 8 -0.8880 -4.7464 3.0828 23 6 2.1610 -3.7398 0.0582 24 1 -0.4850 0.8400 0.0004 25 1 -0.3471 -1.8018 -1.0246 26 1 1.3268 -2.4870 2.2200 27 1 -0.3218 -2.8255 1.5318 28 1 -0.3586 -7.8998 2.6703 29 1 -2.4868 -7.1981 5.8075 30 1 -1.9971 -9.2088 3.4509 31 1 -2.6124 -9.6410 5.1348 32 1 -4.6177 -8.1260 4.7913 33 1 -4.0029 -7.6935 3.1072 34 1 2.2032 -4.2939 -0.8796 35 1 3.1463 -3.5443 0.4813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329408144.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:51 Heat of formation + Delta-G solvation = 25.280309 kcal Electronic energy + Delta-G solvation = -21301.473869 eV Core-core repulsion = 17883.692758 eV Total energy + Delta-G solvation = -3417.781111 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.12737 -41.25837 -39.23096 -38.57363 -35.89982 -34.42334 -34.15306 -33.22651 -30.47495 -27.47092 -27.09751 -25.74554 -24.73544 -23.31026 -22.88944 -21.46659 -20.16773 -19.44370 -18.86931 -18.64183 -17.62998 -17.30157 -16.97239 -16.39697 -16.25818 -15.94728 -15.44387 -15.11365 -14.80638 -14.46738 -14.25559 -13.81524 -13.42937 -13.22074 -12.95289 -12.88720 -12.77921 -12.42308 -12.24967 -12.23782 -12.20294 -11.71348 -11.42280 -11.17183 -11.00894 -10.76814 -10.66773 -10.34261 -9.73735 -8.26393 -6.43490 -0.37979 0.87666 1.38608 1.47048 1.52296 1.62025 1.80672 1.92859 2.41665 2.61500 2.92178 2.97980 3.23375 3.62356 3.74615 3.78475 3.92510 4.01350 4.10986 4.16997 4.33265 4.41239 4.57210 4.71470 4.72184 4.78678 4.83566 4.89296 4.97189 5.07049 5.20319 5.21050 5.73333 5.90740 6.48849 6.63336 6.67439 6.97216 7.29745 7.41736 8.80248 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030461 B = 0.004144 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.995086 B = 6754.992330 C = 7265.536223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.033 3.967 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.220 3.780 10 O -0.585 6.585 11 C 0.091 3.909 12 N -0.620 5.620 13 C 0.611 3.389 14 O -0.559 6.559 15 C -0.082 4.082 16 C -0.146 4.146 17 C 0.051 3.949 18 C -0.110 4.110 19 C -0.144 4.144 20 C -0.161 4.161 21 N -0.365 5.365 22 O 0.101 5.899 23 C 0.119 3.881 24 H 0.275 0.725 25 H 0.388 0.612 26 H 0.097 0.903 27 H 0.064 0.936 28 H 0.204 0.796 29 H 0.137 0.863 30 H 0.101 0.899 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.003 -11.696 8.882 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.168 4.168 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.096 0.904 9 C 0.178 3.822 10 O -0.396 6.396 11 C -0.031 4.031 12 N -0.352 5.352 13 C 0.398 3.602 14 O -0.440 6.440 15 C -0.148 4.148 16 C -0.168 4.168 17 C -0.107 4.107 18 C -0.128 4.128 19 C -0.181 4.181 20 C -0.198 4.198 21 N -0.069 5.069 22 O 0.032 5.968 23 C -0.002 4.002 24 H 0.085 0.915 25 H 0.242 0.758 26 H 0.115 0.885 27 H 0.083 0.917 28 H 0.221 0.779 29 H 0.155 0.845 30 H 0.120 0.880 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.331 -11.891 9.193 15.642 hybrid contribution 0.306 1.035 -0.289 1.117 sum -4.025 -10.856 8.904 14.607 Atomic orbital electron populations 1.69483 1.07216 1.28881 1.50122 1.25762 0.95716 1.02695 0.92658 0.85329 0.79098 0.78606 0.77522 1.18855 1.20852 1.20528 1.21740 0.94335 0.90414 1.52700 0.90399 1.20120 0.85913 0.92167 0.83976 1.86042 1.47502 1.49683 1.56423 1.24336 1.00224 0.76472 1.02096 1.50226 1.39580 1.04718 1.40633 1.16393 0.81066 0.82428 0.80276 1.90773 1.56209 1.39682 1.57329 1.24171 1.00171 0.89628 1.00834 1.23073 0.96811 1.00031 0.96845 1.23228 0.98529 0.90109 0.98841 1.20332 1.00176 0.94335 0.97986 1.23217 1.00143 0.90295 1.04464 1.23139 0.92096 1.02344 1.02259 1.73712 1.09905 1.13701 1.09612 1.85084 1.38137 1.33939 1.39609 1.23616 0.93886 0.91450 0.91244 0.91516 0.75782 0.88546 0.91712 0.77920 0.84500 0.88042 0.85022 0.85652 0.89691 0.90841 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -46.16 11.21 21.45 0.24 -45.92 16 2 C 0.03 1.58 5.40 84.65 0.46 2.04 16 3 Si 0.97 38.92 29.54 68.60 2.03 40.95 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 6 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.55 -26.92 8.61 25.60 0.22 -26.70 16 8 H 0.08 3.63 7.81 -2.91 -0.02 3.60 16 9 C 0.22 10.32 1.40 -10.88 -0.02 10.31 16 10 O -0.58 -30.00 13.49 -148.98 -2.01 -32.01 16 11 C 0.09 3.95 7.39 86.44 0.64 4.59 16 12 N -0.62 -26.06 3.61 -843.48 -3.05 -29.10 16 13 C 0.61 24.97 8.05 86.69 0.70 25.67 16 14 O -0.56 -24.46 17.64 -3.96 -0.07 -24.53 16 15 C -0.08 -2.96 7.22 24.38 0.18 -2.79 16 16 C -0.15 -4.21 10.26 22.68 0.23 -3.97 16 17 C 0.05 1.41 6.94 43.56 0.30 1.71 16 18 C -0.11 -2.06 6.33 -11.54 -0.07 -2.14 16 19 C -0.14 -1.85 10.04 30.59 0.31 -1.54 16 20 C -0.16 -2.44 10.23 30.59 0.31 -2.13 16 21 N -0.37 -12.43 12.04 -48.86 -0.59 -13.02 16 22 O 0.10 3.76 9.87 65.77 0.65 4.41 16 23 C 0.12 4.94 8.23 86.49 0.71 5.66 16 24 H 0.28 13.15 8.31 -92.71 -0.77 12.38 16 25 H 0.39 20.31 6.61 -74.06 -0.49 19.82 16 26 H 0.10 3.98 8.09 -2.39 -0.02 3.96 16 27 H 0.06 2.95 7.60 -2.38 -0.02 2.93 16 28 H 0.20 4.71 7.61 -2.91 -0.02 4.69 16 29 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.10 1.33 7.33 -2.38 -0.02 1.31 16 31 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 35 H 0.12 4.22 8.09 -2.39 -0.02 4.20 16 Total: -1.00 -58.99 310.97 1.81 -57.17 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.64 Total: 31.34 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 3.97 Total: 10.71 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -3.39 Total: -88.04 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -1.43 Total: -52.13 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -58.99 1.81 -57.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329408144.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.454 kcal (2) G-P(sol) polarization free energy of solvation -58.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds