Wall clock time and date at job start Tue Mar 31 2020 00:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00062 * 2 1 4 4 H 1.48502 * 109.46643 * 269.99720 * 3 2 1 5 5 H 1.48498 * 109.47339 * 29.99204 * 3 2 1 6 6 H 1.48496 * 109.47360 * 149.99804 * 3 2 1 7 7 C 1.37874 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00499 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99845 * 180.02562 * 7 2 1 10 10 O 1.42902 * 113.41442 * 313.20044 * 9 7 2 11 11 C 1.53504 * 114.20523 * 180.02562 * 9 7 2 12 12 N 1.47066 * 88.04678 * 220.37340 * 11 9 7 13 13 C 1.34779 * 136.05571 * 207.12426 * 12 11 9 14 14 O 1.21606 * 120.00084 * 359.97438 * 13 12 11 15 15 C 1.47399 * 119.99868 * 180.02562 * 13 12 11 16 16 C 1.37356 * 128.56659 * 0.02562 * 15 13 12 17 17 O 1.33494 * 106.34665 * 179.97438 * 16 15 13 18 18 N 1.20661 * 113.14998 * 0.02562 * 17 16 15 19 19 C 1.30015 * 112.30269 * 359.73282 * 18 17 16 20 20 C 1.50697 * 127.33281 * 180.27286 * 19 18 17 21 21 C 1.52997 * 117.50164 * 8.77175 * 20 19 18 22 22 C 1.52995 * 60.00259 * 252.50960 * 21 20 19 23 23 C 1.47064 * 87.88659 * 27.09306 * 12 11 9 24 24 H 0.96996 * 120.00113 * 0.02562 * 1 2 3 25 25 H 0.96697 * 113.99512 * 46.80894 * 10 9 7 26 26 H 1.09002 * 113.46865 * 105.56435 * 11 9 7 27 27 H 1.08999 * 113.46581 * 335.18211 * 11 9 7 28 28 H 1.08007 * 126.82573 * 359.97438 * 16 15 13 29 29 H 1.09006 * 115.55083 * 154.48095 * 20 19 18 30 30 H 1.09001 * 117.49821 * 0.02562 * 21 20 19 31 31 H 1.08997 * 117.50281 * 145.01838 * 21 20 19 32 32 H 1.09001 * 117.49681 * 252.51163 * 22 21 20 33 33 H 1.08997 * 117.52399 * 107.47571 * 22 21 20 34 34 H 1.08999 * 113.47096 * 87.65665 * 23 12 11 35 35 H 1.09005 * 113.46966 * 218.04058 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6998 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 8 4.0797 -0.2965 -0.9548 11 6 4.1409 -2.5940 0.0010 12 7 5.1413 -2.0894 0.9536 13 6 6.4143 -2.3930 1.2758 14 8 6.9882 -3.2972 0.6997 15 6 7.1105 -1.6298 2.3273 16 6 6.6363 -0.5864 3.0843 17 8 7.6328 -0.2290 3.8975 18 7 8.6291 -0.8928 3.7472 19 6 8.4828 -1.8012 2.8285 20 6 9.5028 -2.8125 2.3726 21 6 10.7947 -2.9280 3.1840 22 6 10.8172 -2.2805 1.7980 23 6 4.1416 -1.1072 1.3994 24 1 -0.4850 0.8400 -0.0004 25 1 3.6811 0.5845 -0.9524 26 1 4.5640 -2.8797 -0.9620 27 1 3.4910 -3.3621 0.4203 28 1 5.6528 -0.1432 3.0320 29 1 9.0972 -3.7265 1.9387 30 1 10.9068 -2.2728 4.0479 31 1 11.2393 -3.9181 3.2843 32 1 11.2765 -2.8448 0.9863 33 1 10.9440 -1.1991 1.7493 34 1 3.4913 -1.4785 2.1913 35 1 4.5654 -0.1288 1.6263 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329565562.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:19 Heat of formation + Delta-G solvation = 64.467109 kcal Electronic energy + Delta-G solvation = -21610.260670 eV Core-core repulsion = 18194.178827 eV Total energy + Delta-G solvation = -3416.081844 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.90683 -39.98289 -37.92803 -37.35230 -34.72042 -33.21083 -32.66286 -31.97278 -29.13310 -26.13545 -25.55867 -24.46486 -23.82700 -22.51539 -20.63637 -20.24469 -19.27218 -17.84984 -17.65848 -17.32271 -16.63280 -16.42662 -15.65792 -15.55041 -14.95722 -14.57181 -14.06269 -13.69927 -13.47121 -13.22226 -12.76891 -12.51603 -12.34739 -12.16163 -11.75004 -11.71196 -11.37824 -11.27515 -11.08237 -10.68823 -10.56380 -10.22471 -10.01028 -9.72522 -9.58723 -9.41599 -9.18900 -8.83146 -8.22403 -6.52971 -4.60141 1.11923 1.70043 2.84512 2.89782 2.91921 3.06758 3.27008 3.42865 3.73409 3.91597 3.91860 4.19438 4.49162 4.75402 4.81284 4.85161 4.94860 4.96161 4.96294 5.36889 5.46949 5.48976 5.62231 5.79405 5.89443 5.91571 5.95424 6.03948 6.09239 6.24017 6.29141 6.45370 7.05745 7.89440 8.09336 8.15139 8.37093 8.43625 8.51285 9.03622 10.59014 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029684 B = 0.004859 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.046634 B = 5761.027227 C = 6225.776960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.081 3.919 3 Si 0.859 3.141 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.535 4.535 8 H 0.094 0.906 9 C 0.199 3.801 10 O -0.549 6.549 11 C 0.126 3.874 12 N -0.631 5.631 13 C 0.616 3.384 14 O -0.544 6.544 15 C -0.233 4.233 16 C -0.010 4.010 17 O 0.094 5.906 18 N -0.362 5.362 19 C 0.098 3.902 20 C -0.082 4.082 21 C -0.167 4.167 22 C -0.158 4.158 23 C 0.051 3.949 24 H 0.273 0.727 25 H 0.352 0.648 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.227 0.773 29 H 0.139 0.861 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.794 -0.372 6.329 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.125 4.125 3 Si 0.688 3.312 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.573 4.573 8 H 0.112 0.888 9 C 0.157 3.843 10 O -0.360 6.360 11 C 0.004 3.996 12 N -0.364 5.364 13 C 0.406 3.594 14 O -0.424 6.424 15 C -0.240 4.240 16 C -0.092 4.092 17 O 0.034 5.966 18 N -0.069 5.069 19 C -0.064 4.064 20 C -0.101 4.101 21 C -0.204 4.204 22 C -0.196 4.196 23 C -0.072 4.072 24 H 0.083 0.917 25 H 0.205 0.795 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.243 0.757 29 H 0.157 0.843 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.448 -0.919 6.774 15.984 hybrid contribution -0.720 1.226 -0.359 1.466 sum 13.728 0.306 6.414 15.156 Atomic orbital electron populations 1.69838 1.06053 1.27802 1.47008 1.25005 0.94935 0.98979 0.93538 0.87326 0.80082 0.84413 0.79371 1.19149 1.20834 1.18488 1.21121 0.87131 0.95872 1.53183 0.88762 1.20229 0.92485 0.87489 0.84050 1.86491 1.64171 1.24936 1.60438 1.23194 0.86279 0.97652 0.92443 1.49477 1.09612 1.37116 1.40231 1.16195 0.79841 0.82313 0.81072 1.90737 1.65882 1.31727 1.54032 1.22301 0.95476 1.02223 1.04023 1.26806 0.95757 0.95865 0.90791 1.84557 1.15987 1.47092 1.48923 1.73564 1.06557 1.07390 1.19390 1.23804 0.93166 0.96004 0.93404 1.20347 0.86269 0.98321 1.05203 1.23037 0.99062 1.02860 0.95425 1.23005 0.98238 1.01245 0.97147 1.24729 0.88035 0.91246 1.03225 0.91702 0.79501 0.90609 0.88374 0.75655 0.84317 0.88167 0.87916 0.87701 0.88703 0.88099 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.28 13.96 55.43 0.77 -22.51 16 2 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.86 17.79 24.42 -169.99 -4.15 13.64 16 4 H -0.27 -5.43 7.06 56.52 0.40 -5.03 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.26 -4.91 5.49 56.52 0.31 -4.60 16 7 C -0.54 -12.97 9.27 -34.44 -0.32 -13.29 16 8 H 0.09 2.45 8.06 -52.48 -0.42 2.02 16 9 C 0.20 4.23 1.10 -91.19 -0.10 4.13 16 10 O -0.55 -12.29 13.32 -35.23 -0.47 -12.76 16 11 C 0.13 2.46 8.03 -8.50 -0.07 2.39 16 12 N -0.63 -11.94 3.69 -186.29 -0.69 -12.63 16 13 C 0.62 11.83 8.06 -12.53 -0.10 11.72 16 14 O -0.54 -11.62 16.58 5.27 0.09 -11.54 16 15 C -0.23 -3.85 6.46 -102.90 -0.66 -4.52 16 16 C -0.01 -0.14 11.48 30.41 0.35 0.21 16 17 O 0.09 1.30 11.06 18.65 0.21 1.51 16 18 N -0.36 -5.45 11.71 34.78 0.41 -5.04 16 19 C 0.10 1.54 7.07 -79.77 -0.56 0.97 16 20 C -0.08 -1.13 5.90 -91.77 -0.54 -1.67 16 21 C -0.17 -1.80 10.16 -26.74 -0.27 -2.07 16 22 C -0.16 -1.80 10.23 -26.73 -0.27 -2.08 16 23 C 0.05 0.91 6.11 -8.44 -0.05 0.86 16 24 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 25 H 0.35 7.51 3.16 45.56 0.14 7.65 16 26 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.10 1.75 8.10 -51.93 -0.42 1.33 16 28 H 0.23 2.53 5.55 -52.48 -0.29 2.24 16 29 H 0.14 2.02 7.29 -51.93 -0.38 1.64 16 30 H 0.10 1.12 7.97 -51.93 -0.41 0.70 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.10 1.67 8.10 -51.93 -0.42 1.25 16 35 H 0.06 1.05 5.31 -51.93 -0.28 0.78 16 LS Contribution 298.18 15.07 4.49 4.49 Total: -1.00 -29.00 298.18 -5.44 -34.45 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -3.40 Total: 11.82 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.70 Total: -1.43 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.49 Total: -40.18 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.18 Total: -22.79 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -4.15 Total: 13.64 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.00 -5.44 -34.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329565562.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.914 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds