Wall clock time and date at job start Tue Mar 31 2020 00:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00062 * 2 1 4 4 H 1.48502 * 109.46643 * 269.99720 * 3 2 1 5 5 H 1.48498 * 109.47339 * 29.99204 * 3 2 1 6 6 H 1.48496 * 109.47360 * 149.99804 * 3 2 1 7 7 C 1.37874 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00499 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99845 * 180.02562 * 7 2 1 10 10 O 1.42902 * 113.41442 * 313.20044 * 9 7 2 11 11 C 1.53504 * 114.20523 * 180.02562 * 9 7 2 12 12 N 1.47066 * 88.04678 * 220.37340 * 11 9 7 13 13 C 1.34779 * 136.05571 * 207.12426 * 12 11 9 14 14 O 1.21606 * 120.00084 * 359.97438 * 13 12 11 15 15 C 1.47399 * 119.99868 * 180.02562 * 13 12 11 16 16 C 1.37356 * 128.56659 * 0.02562 * 15 13 12 17 17 O 1.33494 * 106.34665 * 179.97438 * 16 15 13 18 18 N 1.20661 * 113.14998 * 0.02562 * 17 16 15 19 19 C 1.30015 * 112.30269 * 359.73282 * 18 17 16 20 20 C 1.50697 * 127.33281 * 180.27286 * 19 18 17 21 21 C 1.52997 * 117.50164 * 8.77175 * 20 19 18 22 22 C 1.52995 * 60.00259 * 252.50960 * 21 20 19 23 23 C 1.47064 * 87.88659 * 27.09306 * 12 11 9 24 24 H 0.96996 * 120.00113 * 0.02562 * 1 2 3 25 25 H 0.96697 * 113.99512 * 46.80894 * 10 9 7 26 26 H 1.09002 * 113.46865 * 105.56435 * 11 9 7 27 27 H 1.08999 * 113.46581 * 335.18211 * 11 9 7 28 28 H 1.08007 * 126.82573 * 359.97438 * 16 15 13 29 29 H 1.09006 * 115.55083 * 154.48095 * 20 19 18 30 30 H 1.09001 * 117.49821 * 0.02562 * 21 20 19 31 31 H 1.08997 * 117.50281 * 145.01838 * 21 20 19 32 32 H 1.09001 * 117.49681 * 252.51163 * 22 21 20 33 33 H 1.08997 * 117.52399 * 107.47571 * 22 21 20 34 34 H 1.08999 * 113.47096 * 87.65665 * 23 12 11 35 35 H 1.09005 * 113.46966 * 218.04058 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6998 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 8 4.0797 -0.2965 -0.9548 11 6 4.1409 -2.5940 0.0010 12 7 5.1413 -2.0894 0.9536 13 6 6.4143 -2.3930 1.2758 14 8 6.9882 -3.2972 0.6997 15 6 7.1105 -1.6298 2.3273 16 6 6.6363 -0.5864 3.0843 17 8 7.6328 -0.2290 3.8975 18 7 8.6291 -0.8928 3.7472 19 6 8.4828 -1.8012 2.8285 20 6 9.5028 -2.8125 2.3726 21 6 10.7947 -2.9280 3.1840 22 6 10.8172 -2.2805 1.7980 23 6 4.1416 -1.1072 1.3994 24 1 -0.4850 0.8400 -0.0004 25 1 3.6811 0.5845 -0.9524 26 1 4.5640 -2.8797 -0.9620 27 1 3.4910 -3.3621 0.4203 28 1 5.6528 -0.1432 3.0320 29 1 9.0972 -3.7265 1.9387 30 1 10.9068 -2.2728 4.0479 31 1 11.2393 -3.9181 3.2843 32 1 11.2765 -2.8448 0.9863 33 1 10.9440 -1.1991 1.7493 34 1 3.4913 -1.4785 2.1913 35 1 4.5654 -0.1288 1.6263 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000329565562.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:18 Heat of formation + Delta-G solvation = 43.579445 kcal Electronic energy + Delta-G solvation = -21611.166428 eV Core-core repulsion = 18194.178827 eV Total energy + Delta-G solvation = -3416.987601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.05371 -41.53200 -39.36981 -38.42446 -36.39274 -34.55039 -34.37720 -33.14563 -30.71985 -27.79109 -27.09888 -25.60334 -25.10486 -23.37764 -22.18440 -21.35514 -20.70126 -19.50553 -18.82337 -18.76858 -18.09477 -17.93174 -17.06404 -16.56682 -16.47244 -15.81829 -15.55355 -15.30514 -14.90328 -14.76390 -14.28678 -14.14572 -13.87241 -13.21726 -12.88893 -12.82371 -12.66369 -12.59903 -12.40428 -12.38131 -11.91334 -11.67999 -11.43725 -11.09163 -10.95870 -10.93167 -10.61866 -10.52881 -9.75879 -8.41464 -6.54538 -0.05785 0.55440 1.26716 1.29419 1.43462 1.54652 2.00036 2.07657 2.18652 2.73306 2.76254 2.83631 3.13165 3.19468 3.51899 3.75216 3.77251 3.83603 3.96814 4.00233 4.27265 4.33914 4.51262 4.55298 4.64382 4.65753 4.68287 4.80188 4.89679 4.90369 5.07170 5.13419 5.26801 6.03251 6.54994 6.61190 6.67054 6.92547 7.06201 7.13950 8.73695 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029684 B = 0.004859 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.046634 B = 5761.027227 C = 6225.776960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.031 3.969 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.225 1.225 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.186 3.814 10 O -0.558 6.558 11 C 0.123 3.877 12 N -0.632 5.632 13 C 0.616 3.384 14 O -0.575 6.575 15 C -0.268 4.268 16 C 0.021 3.979 17 O 0.102 5.898 18 N -0.369 5.369 19 C 0.094 3.906 20 C -0.113 4.113 21 C -0.145 4.145 22 C -0.151 4.151 23 C 0.064 3.936 24 H 0.274 0.726 25 H 0.356 0.644 26 H 0.066 0.934 27 H 0.110 0.890 28 H 0.256 0.744 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.708 1.018 7.604 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.171 4.171 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.149 1.149 7 C -0.578 4.578 8 H 0.079 0.921 9 C 0.145 3.855 10 O -0.371 6.371 11 C 0.001 3.999 12 N -0.364 5.364 13 C 0.407 3.593 14 O -0.457 6.457 15 C -0.275 4.275 16 C -0.061 4.061 17 O 0.044 5.956 18 N -0.076 5.076 19 C -0.068 4.068 20 C -0.132 4.132 21 C -0.182 4.182 22 C -0.189 4.189 23 C -0.059 4.059 24 H 0.084 0.916 25 H 0.210 0.790 26 H 0.085 0.915 27 H 0.127 0.873 28 H 0.271 0.729 29 H 0.142 0.858 30 H 0.117 0.883 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.110 0.890 34 H 0.136 0.864 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.384 0.469 8.068 18.269 hybrid contribution -1.357 0.703 -0.793 1.722 sum 15.027 1.172 7.274 16.736 Atomic orbital electron populations 1.69981 1.08047 1.28903 1.48951 1.25796 0.95564 1.02781 0.92963 0.86381 0.80193 0.79469 0.79930 1.18780 1.20772 1.14863 1.21213 0.88926 0.94794 1.52848 0.92102 1.20244 0.90818 0.88451 0.85990 1.86491 1.64039 1.25336 1.61210 1.23198 0.86726 0.97280 0.92692 1.49423 1.09685 1.37259 1.40062 1.16504 0.79527 0.82088 0.81182 1.90715 1.66442 1.33204 1.55337 1.22126 0.96405 1.03962 1.05020 1.27189 0.96121 0.93993 0.88751 1.84560 1.15844 1.46654 1.48583 1.73566 1.06984 1.07627 1.19436 1.24084 0.93296 0.96261 0.93189 1.20391 0.87136 0.97968 1.07740 1.23118 0.96333 1.03892 0.94897 1.23101 0.96283 1.01346 0.98209 1.24593 0.87620 0.92472 1.01193 0.91628 0.79049 0.91508 0.87257 0.72877 0.85832 0.88313 0.85667 0.86137 0.89014 0.86350 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.04 13.96 21.45 0.30 -49.75 16 2 C 0.03 1.51 5.47 84.65 0.46 1.97 16 3 Si 0.92 35.08 24.42 68.60 1.68 36.75 16 4 H -0.26 -9.87 7.06 99.48 0.70 -9.17 16 5 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16 6 H -0.22 -7.29 5.49 99.48 0.55 -6.75 16 7 C -0.54 -26.25 9.27 25.60 0.24 -26.01 16 8 H 0.06 3.27 8.06 -2.91 -0.02 3.25 16 9 C 0.19 7.64 1.10 -11.16 -0.01 7.63 16 10 O -0.56 -23.87 13.32 -148.98 -1.98 -25.85 16 11 C 0.12 4.74 8.03 83.18 0.67 5.41 16 12 N -0.63 -22.79 3.69 -861.98 -3.18 -25.97 16 13 C 0.62 22.90 8.06 86.66 0.70 23.59 16 14 O -0.58 -24.56 16.58 -4.05 -0.07 -24.63 16 15 C -0.27 -8.32 6.46 -18.75 -0.12 -8.44 16 16 C 0.02 0.51 11.48 67.61 0.78 1.29 16 17 O 0.10 2.52 11.06 76.97 0.85 3.37 16 18 N -0.37 -10.27 11.71 -44.78 -0.52 -10.80 16 19 C 0.09 2.78 7.07 45.15 0.32 3.10 16 20 C -0.11 -2.99 5.90 -11.54 -0.07 -3.06 16 21 C -0.15 -2.83 10.16 30.59 0.31 -2.51 16 22 C -0.15 -3.18 10.23 30.59 0.31 -2.86 16 23 C 0.06 2.10 6.11 83.22 0.51 2.60 16 24 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 25 H 0.36 14.17 3.16 -74.06 -0.23 13.94 16 26 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.11 3.90 8.10 -2.39 -0.02 3.88 16 28 H 0.26 4.39 5.55 -2.91 -0.02 4.38 16 29 H 0.12 3.61 7.29 -2.38 -0.02 3.60 16 30 H 0.10 1.97 7.97 -2.39 -0.02 1.95 16 31 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.12 3.53 8.10 -2.39 -0.02 3.51 16 35 H 0.09 2.49 5.31 -2.38 -0.01 2.48 16 Total: -1.00 -63.42 298.18 1.91 -61.51 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.75 Total: 32.65 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 4.09 Total: 2.71 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -3.41 Total: -86.51 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -1.20 Total: -47.11 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 1.68 Total: 36.75 kcal Total: -63.42 1.91 -61.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329565562.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.094 kcal (2) G-P(sol) polarization free energy of solvation -63.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds