Wall clock time and date at job start Tue Mar 31 2020 00:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47305 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 119.99674 * 3 2 1 6 6 H 1.48499 * 109.46987 * 239.99642 * 3 2 1 7 7 C 1.37870 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 193.83475 * 7 2 1 9 9 C 1.50700 * 120.00275 * 13.83955 * 7 2 1 10 10 O 1.42897 * 112.94783 * 53.31840 * 9 7 2 11 11 C 1.53951 * 113.73930 * 281.58305 * 9 7 2 12 12 N 1.47585 * 86.11814 * 222.04471 * 11 9 7 13 13 C 1.34771 * 134.49296 * 204.63537 * 12 11 9 14 14 O 1.21279 * 120.00331 * 180.02562 * 13 12 11 15 15 C 1.50707 * 120.00011 * 0.02562 * 13 12 11 16 16 O 1.42898 * 109.46781 * 179.97438 * 15 13 12 17 17 C 1.35916 * 116.99890 * 179.97438 * 16 15 13 18 18 C 1.39132 * 120.47667 * 179.72551 * 17 16 15 19 19 C 1.38534 * 118.37495 * 179.71265 * 18 17 16 20 20 C 1.38253 * 119.22280 * 0.58189 * 19 18 17 21 21 N 1.31850 * 120.88459 * 359.68137 * 20 19 18 22 22 C 1.31842 * 121.77838 * 0.02562 * 21 20 19 23 23 C 1.47584 * 91.01048 * 24.64339 * 12 11 9 24 24 H 0.97007 * 119.99483 * 185.87567 * 1 2 3 25 25 H 0.96698 * 114.00098 * 303.04147 * 10 9 7 26 26 H 1.08994 * 113.76900 * 336.35179 * 11 9 7 27 27 H 1.09010 * 113.76488 * 107.74641 * 11 9 7 28 28 H 1.08992 * 109.46728 * 299.99633 * 15 13 12 29 29 H 1.08994 * 109.46926 * 59.99489 * 15 13 12 30 30 H 1.07999 * 120.80941 * 359.97438 * 18 17 16 31 31 H 1.08003 * 120.38929 * 180.25901 * 19 18 17 32 32 H 1.07996 * 119.55927 * 179.70222 * 20 19 18 33 33 H 1.08004 * 119.65362 * 179.97438 * 22 21 20 34 34 H 1.09003 * 113.76727 * 221.05145 * 23 12 11 35 35 H 1.09000 * 113.86995 * 89.67487 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0610 -1.2075 0.2242 9 6 1.2839 -2.4803 -0.3111 10 8 0.5652 -2.4315 -1.5452 11 6 0.4600 -3.0303 0.8674 12 7 0.9831 -4.3560 0.4838 13 6 0.5567 -5.6237 0.6495 14 8 1.2133 -6.5461 0.2150 15 6 -0.7362 -5.8951 1.3748 16 8 -0.9700 -7.3041 1.4203 17 6 -2.1026 -7.7217 2.0449 18 6 -2.4046 -9.0775 2.1264 19 6 -3.5673 -9.4550 2.7782 20 6 -4.3892 -8.4796 3.3115 21 7 -4.0766 -7.2025 3.2122 22 6 -2.9769 -6.8021 2.6052 23 6 2.1608 -3.7358 -0.1538 24 1 -0.4850 -0.8357 0.0860 25 1 -0.0835 -1.7161 -1.5945 26 1 0.8051 -2.6872 1.8427 27 1 -0.6172 -2.9282 0.7358 28 1 -0.6722 -5.5041 2.3901 29 1 -1.5571 -5.4077 0.8488 30 1 -1.7465 -9.8176 1.6958 31 1 -3.8312 -10.4987 2.8641 32 1 -5.2994 -8.7675 3.8165 33 1 -2.7546 -5.7470 2.5433 34 1 2.4415 -4.1971 -1.1007 35 1 3.0066 -3.5995 0.5201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332505930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:26 Heat of formation + Delta-G solvation = -43.144381 kcal Electronic energy + Delta-G solvation = -20942.689048 eV Core-core repulsion = 17521.940820 eV Total energy + Delta-G solvation = -3420.748228 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.85206 -39.82181 -38.45817 -37.24552 -34.41260 -32.63765 -32.47504 -30.75264 -29.72512 -27.45497 -25.66730 -24.85397 -23.80549 -23.02227 -20.56524 -18.75664 -18.54742 -18.10304 -16.98008 -16.90114 -16.49519 -16.19708 -15.43573 -15.04756 -14.70178 -14.57433 -14.10326 -13.95022 -13.57637 -13.42532 -13.05594 -12.80068 -12.52070 -12.31598 -12.24388 -11.71176 -11.50768 -11.23393 -10.98886 -10.65320 -10.26888 -9.95438 -9.78909 -9.57223 -9.44853 -8.91623 -8.67665 -8.55246 -8.05870 -6.76645 -4.56781 0.87494 1.06802 2.45979 2.83708 3.26312 3.31102 3.48573 3.55537 3.57791 4.25749 4.27882 4.39108 4.53246 4.66972 4.74680 4.82904 4.92796 4.98389 5.15571 5.21883 5.29795 5.55304 5.74384 5.85098 5.89330 6.00082 6.16396 6.24013 6.26311 6.33203 6.65910 6.99377 7.55387 7.72233 8.01098 8.11209 8.35307 8.42421 8.73733 9.13564 10.54859 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030994 B = 0.003607 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.195644 B = 7760.644823 C = 8392.982519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.038 3.962 3 Si 1.067 2.933 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.619 4.619 8 H 0.066 0.934 9 C 0.217 3.783 10 O -0.565 6.565 11 C 0.064 3.936 12 N -0.631 5.631 13 C 0.533 3.467 14 O -0.539 6.539 15 C 0.045 3.955 16 O -0.283 6.283 17 C 0.084 3.916 18 C -0.108 4.108 19 C -0.132 4.132 20 C 0.054 3.946 21 N -0.449 5.449 22 C 0.015 3.985 23 C 0.128 3.872 24 H 0.267 0.733 25 H 0.376 0.624 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.074 0.926 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 -11.180 6.075 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.168 4.168 3 Si 0.893 3.107 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.656 4.656 8 H 0.085 0.915 9 C 0.176 3.824 10 O -0.373 6.373 11 C -0.058 4.058 12 N -0.367 5.367 13 C 0.320 3.680 14 O -0.417 6.417 15 C -0.034 4.034 16 O -0.194 6.194 17 C 0.036 3.964 18 C -0.135 4.135 19 C -0.152 4.152 20 C -0.103 4.103 21 N -0.158 5.158 22 C -0.143 4.143 23 C 0.007 3.993 24 H 0.079 0.921 25 H 0.225 0.775 26 H 0.110 0.890 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.175 0.825 33 H 0.177 0.823 34 H 0.093 0.907 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.052 -10.249 5.907 13.288 hybrid contribution 0.237 -1.657 0.068 1.676 sum -5.815 -11.906 5.975 14.535 Atomic orbital electron populations 1.70967 1.06992 1.30634 1.44611 1.25995 0.96188 1.03075 0.91546 0.83575 0.75176 0.74903 0.77016 1.20520 1.21066 1.20965 1.22215 0.97899 0.91897 1.53625 0.91536 1.20119 0.88281 0.92959 0.81003 1.86260 1.57079 1.56322 1.37608 1.24613 0.99933 0.78608 1.02693 1.50085 1.26265 1.03881 1.56429 1.19430 0.86137 0.81978 0.80437 1.90697 1.57782 1.42780 1.50413 1.22501 0.98146 0.80629 1.02094 1.86169 1.37557 1.23731 1.71906 1.20181 0.87478 0.94698 0.94085 1.20979 0.98274 0.93387 1.00814 1.22019 0.94166 1.01454 0.97544 1.22675 1.00100 0.87951 0.99608 1.67537 1.16263 1.18930 1.13059 1.23003 0.91859 1.00122 0.99332 1.23353 0.89208 0.89976 0.96784 0.92075 0.77499 0.89048 0.91425 0.88917 0.88852 0.83811 0.84029 0.82523 0.82339 0.90728 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.68 12.80 55.43 0.71 -21.97 16 2 C 0.04 0.93 5.26 -17.82 -0.09 0.84 16 3 Si 1.07 22.05 29.93 -169.99 -5.09 16.97 16 4 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.62 -15.05 8.56 -34.44 -0.29 -15.34 16 8 H 0.07 1.61 7.85 -52.49 -0.41 1.19 16 9 C 0.22 4.88 1.08 -90.84 -0.10 4.78 16 10 O -0.57 -13.34 13.45 -35.23 -0.47 -13.82 16 11 C 0.06 1.25 7.05 -2.97 -0.02 1.23 16 12 N -0.63 -12.40 3.61 -178.27 -0.64 -13.04 16 13 C 0.53 10.33 8.13 -10.98 -0.09 10.24 16 14 O -0.54 -12.33 17.23 -14.35 -0.25 -12.57 16 15 C 0.04 0.67 4.98 36.01 0.18 0.85 16 16 O -0.28 -4.46 9.68 -39.39 -0.38 -4.84 16 17 C 0.08 1.12 6.71 -39.08 -0.26 0.86 16 18 C -0.11 -1.20 10.13 -39.14 -0.40 -1.60 16 19 C -0.13 -1.18 10.11 -39.47 -0.40 -1.58 16 20 C 0.05 0.54 11.18 -17.54 -0.20 0.35 16 21 N -0.45 -5.72 10.36 -13.12 -0.14 -5.85 16 22 C 0.01 0.19 10.22 -17.37 -0.18 0.01 16 23 C 0.13 2.65 8.22 -2.97 -0.02 2.63 16 24 H 0.27 6.51 5.52 -40.82 -0.23 6.29 16 25 H 0.38 8.65 6.95 45.56 0.32 8.96 16 26 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 27 H 0.07 1.23 7.80 -51.92 -0.41 0.83 16 28 H 0.09 1.16 7.68 -51.93 -0.40 0.76 16 29 H 0.09 1.24 7.68 -51.93 -0.40 0.84 16 30 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 32 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.16 1.79 6.32 -52.48 -0.33 1.46 16 34 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 LS Contribution 308.31 15.07 4.65 4.65 Total: -1.00 -30.49 308.31 -6.67 -37.16 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -3.18 Total: 10.08 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.87 Total: 3.25 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: -0.07 Total: -40.86 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -1.10 Total: -31.24 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.09 Total: 16.97 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.49 -6.67 -37.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332505930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.989 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds