Wall clock time and date at job start Tue Mar 31 2020 00:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47305 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 119.99674 * 3 2 1 6 6 H 1.48499 * 109.46987 * 239.99642 * 3 2 1 7 7 C 1.37870 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 193.83475 * 7 2 1 9 9 C 1.50700 * 120.00275 * 13.83955 * 7 2 1 10 10 O 1.42897 * 112.94783 * 53.31840 * 9 7 2 11 11 C 1.53951 * 113.73930 * 281.58305 * 9 7 2 12 12 N 1.47585 * 86.11814 * 222.04471 * 11 9 7 13 13 C 1.34771 * 134.49296 * 204.63537 * 12 11 9 14 14 O 1.21279 * 120.00331 * 180.02562 * 13 12 11 15 15 C 1.50707 * 120.00011 * 0.02562 * 13 12 11 16 16 O 1.42898 * 109.46781 * 179.97438 * 15 13 12 17 17 C 1.35916 * 116.99890 * 179.97438 * 16 15 13 18 18 C 1.39132 * 120.47667 * 179.72551 * 17 16 15 19 19 C 1.38534 * 118.37495 * 179.71265 * 18 17 16 20 20 C 1.38253 * 119.22280 * 0.58189 * 19 18 17 21 21 N 1.31850 * 120.88459 * 359.68137 * 20 19 18 22 22 C 1.31842 * 121.77838 * 0.02562 * 21 20 19 23 23 C 1.47584 * 91.01048 * 24.64339 * 12 11 9 24 24 H 0.97007 * 119.99483 * 185.87567 * 1 2 3 25 25 H 0.96698 * 114.00098 * 303.04147 * 10 9 7 26 26 H 1.08994 * 113.76900 * 336.35179 * 11 9 7 27 27 H 1.09010 * 113.76488 * 107.74641 * 11 9 7 28 28 H 1.08992 * 109.46728 * 299.99633 * 15 13 12 29 29 H 1.08994 * 109.46926 * 59.99489 * 15 13 12 30 30 H 1.07999 * 120.80941 * 359.97438 * 18 17 16 31 31 H 1.08003 * 120.38929 * 180.25901 * 19 18 17 32 32 H 1.07996 * 119.55927 * 179.70222 * 20 19 18 33 33 H 1.08004 * 119.65362 * 179.97438 * 22 21 20 34 34 H 1.09003 * 113.76727 * 221.05145 * 23 12 11 35 35 H 1.09000 * 113.86995 * 89.67487 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0610 -1.2075 0.2242 9 6 1.2839 -2.4803 -0.3111 10 8 0.5652 -2.4315 -1.5452 11 6 0.4600 -3.0303 0.8674 12 7 0.9831 -4.3560 0.4838 13 6 0.5567 -5.6237 0.6495 14 8 1.2133 -6.5461 0.2150 15 6 -0.7362 -5.8951 1.3748 16 8 -0.9700 -7.3041 1.4203 17 6 -2.1026 -7.7217 2.0449 18 6 -2.4046 -9.0775 2.1264 19 6 -3.5673 -9.4550 2.7782 20 6 -4.3892 -8.4796 3.3115 21 7 -4.0766 -7.2025 3.2122 22 6 -2.9769 -6.8021 2.6052 23 6 2.1608 -3.7358 -0.1538 24 1 -0.4850 -0.8357 0.0860 25 1 -0.0835 -1.7161 -1.5945 26 1 0.8051 -2.6872 1.8427 27 1 -0.6172 -2.9282 0.7358 28 1 -0.6722 -5.5041 2.3901 29 1 -1.5571 -5.4077 0.8488 30 1 -1.7465 -9.8176 1.6958 31 1 -3.8312 -10.4987 2.8641 32 1 -5.2994 -8.7675 3.8165 33 1 -2.7546 -5.7470 2.5433 34 1 2.4415 -4.1971 -1.1007 35 1 3.0066 -3.5995 0.5201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332505930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:25 Heat of formation + Delta-G solvation = -64.823502 kcal Electronic energy + Delta-G solvation = -20943.629125 eV Core-core repulsion = 17521.940820 eV Total energy + Delta-G solvation = -3421.688305 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.88679 -41.29669 -39.72691 -38.66614 -36.18098 -34.34264 -33.48846 -31.81224 -31.02596 -28.88513 -27.30222 -26.53416 -24.70161 -23.94982 -22.21985 -20.35474 -19.85962 -19.51633 -18.24377 -17.88987 -17.70296 -17.46847 -16.83504 -16.68999 -16.22237 -15.69910 -15.51680 -15.40587 -14.78673 -14.57235 -14.34406 -14.17160 -13.91461 -13.74411 -13.44761 -13.17192 -12.98643 -12.64864 -12.62118 -12.39303 -11.90394 -11.30671 -11.18771 -10.75987 -10.73438 -10.51658 -10.27454 -9.74934 -9.59175 -8.67220 -6.48254 0.06207 0.21406 1.19471 1.32887 1.62684 1.66070 1.87247 2.25431 2.56462 2.75056 2.90079 3.12458 3.43861 3.47396 3.63301 3.82809 3.84512 3.88279 3.93270 4.04967 4.26123 4.38304 4.38656 4.55240 4.58669 4.61121 4.70369 4.93543 4.95722 5.08328 5.48623 5.73242 6.01410 6.09775 6.46378 6.56037 6.86419 6.89572 6.92322 7.27039 8.66322 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030994 B = 0.003607 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.195644 B = 7760.644823 C = 8392.982519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.002 3.998 3 Si 1.108 2.892 4 H -0.285 1.285 5 H -0.270 1.270 6 H -0.279 1.279 7 C -0.633 4.633 8 H 0.062 0.938 9 C 0.198 3.802 10 O -0.577 6.577 11 C 0.081 3.919 12 N -0.630 5.630 13 C 0.527 3.473 14 O -0.580 6.580 15 C 0.054 3.946 16 O -0.308 6.308 17 C 0.058 3.942 18 C -0.117 4.117 19 C -0.118 4.118 20 C 0.054 3.946 21 N -0.475 5.475 22 C 0.004 3.996 23 C 0.125 3.875 24 H 0.266 0.734 25 H 0.375 0.625 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.153 0.847 31 H 0.182 0.818 32 H 0.189 0.811 33 H 0.165 0.835 34 H 0.063 0.937 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 -11.897 7.324 15.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.200 4.200 3 Si 0.931 3.069 4 H -0.210 1.210 5 H -0.195 1.195 6 H -0.205 1.205 7 C -0.670 4.670 8 H 0.080 0.920 9 C 0.157 3.843 10 O -0.384 6.384 11 C -0.041 4.041 12 N -0.364 5.364 13 C 0.317 3.683 14 O -0.461 6.461 15 C -0.023 4.023 16 O -0.220 6.220 17 C 0.011 3.989 18 C -0.143 4.143 19 C -0.137 4.137 20 C -0.104 4.104 21 N -0.185 5.185 22 C -0.153 4.153 23 C 0.003 3.997 24 H 0.078 0.922 25 H 0.224 0.776 26 H 0.118 0.882 27 H 0.099 0.901 28 H 0.137 0.863 29 H 0.129 0.871 30 H 0.170 0.830 31 H 0.199 0.801 32 H 0.206 0.794 33 H 0.182 0.818 34 H 0.082 0.918 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.150 -10.970 7.170 14.929 hybrid contribution 0.521 -1.551 -0.319 1.667 sum -6.629 -12.522 6.850 15.738 Atomic orbital electron populations 1.71024 1.07526 1.30743 1.45836 1.27012 0.96392 1.05652 0.90983 0.83016 0.74356 0.71863 0.77693 1.21040 1.19481 1.20531 1.22441 0.97927 0.92996 1.53685 0.91956 1.20326 0.89383 0.93021 0.81544 1.86246 1.57202 1.56297 1.38679 1.24401 1.00306 0.77777 1.01633 1.50055 1.25843 1.04318 1.56215 1.20197 0.87205 0.81056 0.79816 1.90668 1.59382 1.43796 1.52214 1.22413 0.95793 0.81179 1.02950 1.86112 1.39080 1.23749 1.73040 1.20411 0.87264 0.95799 0.95402 1.21337 0.99277 0.92806 1.00919 1.22434 0.92531 1.03288 0.95445 1.23328 1.01057 0.87282 0.98722 1.67574 1.16447 1.20599 1.13897 1.23092 0.92040 1.00482 0.99666 1.23355 0.89980 0.89454 0.96916 0.92248 0.77558 0.88215 0.90072 0.86315 0.87142 0.82953 0.80058 0.79372 0.81759 0.91846 0.87604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.82 12.80 21.45 0.27 -45.55 16 2 C 0.00 0.09 5.26 84.65 0.45 0.53 16 3 Si 1.11 43.77 29.93 68.60 2.05 45.82 16 4 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.63 -30.56 8.56 25.60 0.22 -30.34 16 8 H 0.06 2.99 7.85 -2.91 -0.02 2.97 16 9 C 0.20 8.84 1.08 -10.88 -0.01 8.83 16 10 O -0.58 -27.39 13.45 -148.98 -2.00 -29.39 16 11 C 0.08 3.08 7.05 86.48 0.61 3.69 16 12 N -0.63 -24.46 3.61 -840.13 -3.03 -27.49 16 13 C 0.53 20.34 8.13 87.66 0.71 21.06 16 14 O -0.58 -26.89 17.23 16.01 0.28 -26.61 16 15 C 0.05 1.58 4.98 71.24 0.35 1.93 16 16 O -0.31 -9.60 9.68 -73.56 -0.71 -10.31 16 17 C 0.06 1.51 6.71 22.60 0.15 1.66 16 18 C -0.12 -2.40 10.13 22.56 0.23 -2.17 16 19 C -0.12 -1.72 10.11 22.34 0.23 -1.50 16 20 C 0.05 0.92 11.18 84.69 0.95 1.86 16 21 N -0.48 -11.26 10.36 -195.44 -2.02 -13.29 16 22 C 0.00 0.10 10.22 84.80 0.87 0.97 16 23 C 0.12 5.18 8.22 86.48 0.71 5.89 16 24 H 0.27 12.87 5.52 -92.70 -0.51 12.36 16 25 H 0.38 17.44 6.95 -74.06 -0.52 16.92 16 26 H 0.10 3.63 8.09 -2.39 -0.02 3.61 16 27 H 0.08 2.85 7.80 -2.38 -0.02 2.83 16 28 H 0.12 2.78 7.68 -2.39 -0.02 2.76 16 29 H 0.11 2.79 7.68 -2.39 -0.02 2.77 16 30 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 32 H 0.19 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.17 3.54 6.32 -2.91 -0.02 3.52 16 34 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.11 4.04 8.09 -2.39 -0.02 4.02 16 Total: -1.00 -65.39 308.31 1.16 -64.23 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.87 Total: 30.19 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 5.46 Total: 12.40 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -4.78 Total: -86.33 kcal Atomic # 8 Polarization: -63.88 SS G_CDS: -2.44 Total: -66.32 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.05 Total: 45.82 kcal Total: -65.39 1.16 -64.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332505930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.591 kcal (2) G-P(sol) polarization free energy of solvation -65.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds