Wall clock time and date at job start Mon Mar 30 2020 23:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48499 * 109.47076 * 240.00274 * 3 2 1 5 5 H 1.48502 * 109.47060 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47168 * 119.99649 * 3 2 1 7 7 C 1.37877 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00181 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47488 * 179.97438 * 9 7 2 11 11 C 1.35703 * 117.00248 * 179.97438 * 10 9 7 12 12 C 1.39001 * 119.91238 * 0.30191 * 11 10 9 13 13 C 1.37701 * 120.09036 * 180.25651 * 12 11 10 14 14 C 1.39740 * 119.91009 * 359.43945 * 13 12 11 15 15 C 1.47594 * 120.08984 * 180.30153 * 14 13 12 16 16 O 1.21587 * 119.99976 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00311 * 180.02562 * 15 14 13 18 18 C 1.46507 * 120.00361 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47202 * 179.97438 * 18 17 15 20 20 N 1.34769 * 119.99673 * 179.97438 * 19 18 17 21 21 O 1.21282 * 120.00023 * 0.02562 * 19 18 17 22 22 C 1.39733 * 119.82362 * 0.28485 * 14 13 12 23 23 C 1.37709 * 119.90833 * 359.97438 * 22 14 13 24 24 H 0.96996 * 119.99662 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.46861 * 59.99493 * 9 7 2 26 26 H 1.09005 * 109.46841 * 300.00451 * 9 7 2 27 27 H 1.08004 * 119.95747 * 359.97438 * 12 11 10 28 28 H 1.08002 * 120.04909 * 179.72495 * 13 12 11 29 29 H 0.97004 * 119.99698 * 359.97438 * 17 15 14 30 30 H 1.08999 * 109.46594 * 299.99752 * 18 17 15 31 31 H 1.08991 * 109.46752 * 59.99612 * 18 17 15 32 32 H 0.97000 * 120.00606 * 359.97438 * 20 19 18 33 33 H 0.97005 * 119.99837 * 180.02562 * 20 19 18 34 34 H 1.08003 * 120.04691 * 180.02562 * 22 14 13 35 35 H 1.07999 * 119.95155 * 180.02562 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0017 11 6 1.6610 -4.8393 -0.0014 12 6 0.2827 -5.0193 -0.0062 13 6 -0.2476 -6.2902 -0.0005 14 6 0.6019 -7.3997 -0.0017 15 6 0.0378 -8.7636 -0.0023 16 8 -1.1676 -8.9229 -0.0023 17 7 0.8588 -9.8324 -0.0029 18 6 0.2988 -11.1862 -0.0041 19 6 1.4198 -12.1935 -0.0052 20 7 1.1408 -13.5120 -0.0059 21 8 2.5729 -11.8175 -0.0046 22 6 1.9870 -7.2145 -0.0026 23 6 2.5093 -5.9403 -0.0029 24 1 -0.4849 0.8400 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 -0.3733 -4.1613 -0.0098 28 1 -1.3186 -6.4292 0.0002 29 1 1.8204 -9.7053 -0.0033 30 1 -0.3150 -11.3262 0.8857 31 1 -0.3146 -11.3248 -0.8943 32 1 0.2186 -13.8127 -0.0053 33 1 1.8624 -14.1604 -0.0063 34 1 2.6469 -8.0694 -0.0040 35 1 3.5797 -5.7964 -0.0041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339332600.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:33 Heat of formation + Delta-G solvation = -94.929171 kcal Electronic energy + Delta-G solvation = -20034.526421 eV Core-core repulsion = 16611.532636 eV Total energy + Delta-G solvation = -3422.993785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.48854 -39.68743 -38.79059 -36.50598 -34.63199 -34.24124 -32.98689 -30.80924 -30.37362 -28.04996 -27.36377 -23.76254 -22.87691 -21.72480 -21.19835 -20.31568 -18.63412 -17.77378 -17.30528 -16.63012 -16.43431 -16.13952 -15.88808 -14.98518 -14.83415 -14.80900 -14.56308 -14.38131 -14.02800 -13.48409 -13.19431 -12.97073 -12.84179 -12.20596 -11.99750 -11.79353 -11.06106 -11.04355 -10.63036 -10.58180 -10.26399 -10.24188 -10.23216 -9.97501 -9.36593 -9.35218 -8.79679 -8.63735 -7.68535 -6.29313 -4.33885 1.22198 1.65898 2.06571 2.65967 3.03221 3.23842 3.27036 3.29941 3.30292 4.04654 4.16117 4.31317 4.41431 4.83438 4.93870 5.01807 5.07903 5.14636 5.17708 5.56864 5.73671 5.90904 6.09991 6.22052 6.28851 6.45104 6.58028 6.65839 6.73650 6.86759 7.05619 7.06740 7.40419 7.61803 7.67125 7.87949 8.17264 8.32942 8.76718 9.31543 10.81733 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.053326 B = 0.002713 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.943522 B =10317.888620 C =10822.384722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.071 0.929 9 C 0.190 3.810 10 O -0.309 6.309 11 C 0.186 3.814 12 C -0.224 4.224 13 C -0.012 4.012 14 C -0.208 4.208 15 C 0.574 3.426 16 O -0.548 6.548 17 N -0.724 5.724 18 C 0.100 3.900 19 C 0.514 3.486 20 N -0.850 5.850 21 O -0.538 6.538 22 C -0.044 4.044 23 C -0.179 4.179 24 H 0.269 0.731 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.142 0.858 28 H 0.133 0.867 29 H 0.411 0.589 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.405 0.595 33 H 0.406 0.594 34 H 0.126 0.874 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 -23.930 -0.009 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.089 0.911 9 C 0.117 3.883 10 O -0.220 6.220 11 C 0.136 3.864 12 C -0.243 4.243 13 C -0.031 4.031 14 C -0.211 4.211 15 C 0.365 3.635 16 O -0.427 6.427 17 N -0.381 5.381 18 C -0.027 4.027 19 C 0.298 3.702 20 N -0.415 5.415 21 O -0.414 6.414 22 C -0.063 4.063 23 C -0.197 4.197 24 H 0.078 0.922 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.159 0.841 28 H 0.151 0.849 29 H 0.250 0.750 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.234 0.766 33 H 0.237 0.763 34 H 0.143 0.857 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.042 -23.400 -0.010 23.400 hybrid contribution 0.358 0.448 0.002 0.574 sum 0.316 -22.951 -0.008 22.954 Atomic orbital electron populations 1.69935 1.06132 1.27867 1.49172 1.24942 0.95075 0.99590 0.94556 0.86276 0.79264 0.81285 0.79017 1.19818 1.20961 1.19815 1.20917 0.94271 0.88627 1.52738 0.91091 1.20767 0.88643 0.81599 0.97262 1.86108 1.39542 1.11909 1.84487 1.19598 0.91704 0.86655 0.88406 1.21481 0.94832 0.98503 1.09508 1.20974 0.99849 0.90483 0.91756 1.19419 0.93871 0.92150 1.15691 1.18245 0.85915 0.84425 0.74964 1.90746 1.14562 1.86731 1.50679 1.45623 1.11431 1.03975 1.77054 1.21003 0.94470 0.82220 1.05049 1.20616 0.90442 0.84040 0.75102 1.43729 1.12765 1.07060 1.77898 1.90770 1.21720 1.79662 1.49244 1.20958 0.93547 0.96533 0.95284 1.20353 1.00026 0.90119 1.09235 0.92164 0.95669 0.95665 0.84061 0.84930 0.74952 0.88176 0.88190 0.76606 0.76297 0.85667 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.92 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.53 -14.79 9.43 -34.44 -0.32 -15.11 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.19 4.91 4.49 36.00 0.16 5.07 16 10 O -0.31 -7.23 10.11 -18.81 -0.19 -7.42 16 11 C 0.19 3.66 6.70 -39.02 -0.26 3.40 16 12 C -0.22 -4.19 9.01 -39.49 -0.36 -4.54 16 13 C -0.01 -0.19 9.58 -39.22 -0.38 -0.57 16 14 C -0.21 -3.19 5.87 -104.96 -0.62 -3.80 16 15 C 0.57 8.28 7.76 -12.44 -0.10 8.18 16 16 O -0.55 -9.21 16.34 5.29 0.09 -9.13 16 17 N -0.72 -8.14 5.48 -62.51 -0.34 -8.48 16 18 C 0.10 0.81 6.15 -5.19 -0.03 0.78 16 19 C 0.51 4.01 8.17 -10.99 -0.09 3.92 16 20 N -0.85 -3.03 8.87 31.22 0.28 -2.75 16 21 O -0.54 -6.38 16.50 5.56 0.09 -6.29 16 22 C -0.04 -0.63 9.53 -39.22 -0.37 -1.00 16 23 C -0.18 -2.92 9.97 -39.50 -0.39 -3.31 16 24 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.03 0.67 7.64 -51.93 -0.40 0.28 16 26 H 0.03 0.68 7.66 -51.93 -0.40 0.28 16 27 H 0.14 2.75 6.28 -52.48 -0.33 2.42 16 28 H 0.13 2.09 7.64 -52.49 -0.40 1.69 16 29 H 0.41 4.46 5.46 -40.82 -0.22 4.23 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.41 0.24 8.83 -40.82 -0.36 -0.12 16 33 H 0.41 1.14 8.93 -40.82 -0.36 0.78 16 34 H 0.13 1.37 6.39 -52.48 -0.34 1.04 16 35 H 0.13 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 312.88 15.07 4.72 4.72 Total: -1.00 -33.84 312.88 -6.12 -39.96 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -3.62 Total: 3.59 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.86 Total: -5.40 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.67 Total: -36.02 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.01 Total: -22.83 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.84 -6.12 -39.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339332600.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.966 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds