Wall clock time and date at job start Mon Mar 30 2020 23:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48499 * 109.47076 * 240.00274 * 3 2 1 5 5 H 1.48502 * 109.47060 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47168 * 119.99649 * 3 2 1 7 7 C 1.37877 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00181 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47488 * 179.97438 * 9 7 2 11 11 C 1.35703 * 117.00248 * 179.97438 * 10 9 7 12 12 C 1.39001 * 119.91238 * 0.30191 * 11 10 9 13 13 C 1.37701 * 120.09036 * 180.25651 * 12 11 10 14 14 C 1.39740 * 119.91009 * 359.43945 * 13 12 11 15 15 C 1.47594 * 120.08984 * 180.30153 * 14 13 12 16 16 O 1.21587 * 119.99976 * 0.02562 * 15 14 13 17 17 N 1.34773 * 120.00311 * 180.02562 * 15 14 13 18 18 C 1.46507 * 120.00361 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47202 * 179.97438 * 18 17 15 20 20 N 1.34769 * 119.99673 * 179.97438 * 19 18 17 21 21 O 1.21282 * 120.00023 * 0.02562 * 19 18 17 22 22 C 1.39733 * 119.82362 * 0.28485 * 14 13 12 23 23 C 1.37709 * 119.90833 * 359.97438 * 22 14 13 24 24 H 0.96996 * 119.99662 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.46861 * 59.99493 * 9 7 2 26 26 H 1.09005 * 109.46841 * 300.00451 * 9 7 2 27 27 H 1.08004 * 119.95747 * 359.97438 * 12 11 10 28 28 H 1.08002 * 120.04909 * 179.72495 * 13 12 11 29 29 H 0.97004 * 119.99698 * 359.97438 * 17 15 14 30 30 H 1.08999 * 109.46594 * 299.99752 * 18 17 15 31 31 H 1.08991 * 109.46752 * 59.99612 * 18 17 15 32 32 H 0.97000 * 120.00606 * 359.97438 * 20 19 18 33 33 H 0.97005 * 119.99837 * 180.02562 * 20 19 18 34 34 H 1.08003 * 120.04691 * 180.02562 * 22 14 13 35 35 H 1.07999 * 119.95155 * 180.02562 * 23 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0017 11 6 1.6610 -4.8393 -0.0014 12 6 0.2827 -5.0193 -0.0062 13 6 -0.2476 -6.2902 -0.0005 14 6 0.6019 -7.3997 -0.0017 15 6 0.0378 -8.7636 -0.0023 16 8 -1.1676 -8.9229 -0.0023 17 7 0.8588 -9.8324 -0.0029 18 6 0.2988 -11.1862 -0.0041 19 6 1.4198 -12.1935 -0.0052 20 7 1.1408 -13.5120 -0.0059 21 8 2.5729 -11.8175 -0.0046 22 6 1.9870 -7.2145 -0.0026 23 6 2.5093 -5.9403 -0.0029 24 1 -0.4849 0.8400 0.0004 25 1 0.6240 -2.5566 -0.8903 26 1 0.6247 -2.5570 0.8897 27 1 -0.3733 -4.1613 -0.0098 28 1 -1.3186 -6.4292 0.0002 29 1 1.8204 -9.7053 -0.0033 30 1 -0.3150 -11.3262 0.8857 31 1 -0.3146 -11.3248 -0.8943 32 1 0.2186 -13.8127 -0.0053 33 1 1.8624 -14.1604 -0.0063 34 1 2.6469 -8.0694 -0.0040 35 1 3.5797 -5.7964 -0.0041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339332600.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:33 Heat of formation + Delta-G solvation = -122.025202 kcal Electronic energy + Delta-G solvation = -20035.701393 eV Core-core repulsion = 16611.532636 eV Total energy + Delta-G solvation = -3424.168757 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.54323 -40.78196 -39.99944 -38.00744 -35.61736 -35.07536 -34.75368 -32.16828 -31.71988 -29.72929 -28.55411 -25.56991 -24.18751 -23.23399 -21.85735 -21.48317 -19.65954 -19.01938 -18.52203 -18.27110 -17.29962 -17.08312 -16.89215 -16.65407 -16.56026 -16.05778 -15.84139 -15.61038 -15.15478 -14.65526 -14.45893 -14.23871 -13.86198 -13.75758 -13.48322 -13.43067 -12.99909 -12.81002 -12.32272 -12.00153 -11.90615 -11.38340 -11.26895 -11.17792 -10.73458 -10.72479 -10.29202 -10.11515 -9.19774 -8.39979 -6.54567 -0.11742 0.31676 1.40120 1.44571 1.48088 1.53025 1.78885 1.87237 2.24766 2.62750 2.63923 2.83054 2.95151 3.70627 3.79845 3.84466 3.93668 4.18741 4.34108 4.35190 4.40742 4.54445 4.70329 4.94321 4.96798 5.13569 5.19758 5.27035 5.33786 5.49916 5.69233 5.81028 5.83319 6.34651 6.39786 6.45994 6.71489 7.08391 7.17098 7.23475 8.71851 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.053326 B = 0.002713 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.943522 B =10317.888620 C =10822.384722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.988 3.012 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.559 4.559 8 H 0.069 0.931 9 C 0.208 3.792 10 O -0.327 6.327 11 C 0.147 3.853 12 C -0.234 4.234 13 C -0.017 4.017 14 C -0.200 4.200 15 C 0.577 3.423 16 O -0.573 6.573 17 N -0.712 5.712 18 C 0.095 3.905 19 C 0.517 3.483 20 N -0.827 5.827 21 O -0.583 6.583 22 C -0.027 4.027 23 C -0.171 4.171 24 H 0.274 0.726 25 H 0.006 0.994 26 H 0.006 0.994 27 H 0.121 0.879 28 H 0.138 0.862 29 H 0.415 0.585 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.422 0.578 33 H 0.413 0.587 34 H 0.167 0.833 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.031 -25.929 -0.009 25.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.596 4.596 8 H 0.087 0.913 9 C 0.135 3.865 10 O -0.240 6.240 11 C 0.099 3.901 12 C -0.253 4.253 13 C -0.036 4.036 14 C -0.203 4.203 15 C 0.366 3.634 16 O -0.455 6.455 17 N -0.367 5.367 18 C -0.031 4.031 19 C 0.301 3.699 20 N -0.391 5.391 21 O -0.463 6.463 22 C -0.045 4.045 23 C -0.189 4.189 24 H 0.083 0.917 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.139 0.861 28 H 0.156 0.844 29 H 0.255 0.745 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.254 0.746 33 H 0.246 0.754 34 H 0.184 0.816 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.882 -25.499 -0.010 25.514 hybrid contribution -0.004 0.775 0.002 0.775 sum 0.878 -24.724 -0.008 24.740 Atomic orbital electron populations 1.70048 1.07757 1.29159 1.49377 1.25969 0.96019 1.03412 0.93463 0.85156 0.78046 0.76267 0.79517 1.18857 1.19976 1.18845 1.21290 0.94489 0.90035 1.53781 0.91250 1.20287 0.88441 0.82470 0.95347 1.86029 1.38926 1.12848 1.86173 1.19983 0.92717 0.86052 0.91361 1.21358 0.94494 0.98843 1.10578 1.21026 1.00497 0.90127 0.91934 1.19694 0.94397 0.92601 1.13645 1.17997 0.85686 0.84565 0.75154 1.90743 1.15599 1.86996 1.52114 1.45536 1.11337 1.04637 1.75237 1.21253 0.94808 0.80529 1.06538 1.20533 0.89471 0.85067 0.74807 1.43552 1.14186 1.05737 1.75649 1.90759 1.23178 1.80500 1.51832 1.21311 0.93462 0.96821 0.92933 1.20633 1.00671 0.89698 1.07936 0.91700 0.97634 0.97635 0.86150 0.84388 0.74505 0.86673 0.86689 0.74617 0.75425 0.81608 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.23 13.29 21.45 0.28 -53.95 16 2 C 0.01 0.62 5.46 84.65 0.46 1.08 16 3 Si 0.99 43.17 29.54 68.60 2.03 45.20 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.56 -32.35 9.43 25.60 0.24 -32.11 16 8 H 0.07 3.93 7.81 -2.91 -0.02 3.90 16 9 C 0.21 11.41 4.49 71.24 0.32 11.73 16 10 O -0.33 -16.01 10.11 -90.23 -0.91 -16.92 16 11 C 0.15 5.96 6.70 22.63 0.15 6.11 16 12 C -0.23 -9.18 9.01 22.33 0.20 -8.98 16 13 C -0.02 -0.57 9.58 22.51 0.22 -0.35 16 14 C -0.20 -5.84 5.87 -20.08 -0.12 -5.96 16 15 C 0.58 15.41 7.76 86.71 0.67 16.09 16 16 O -0.57 -18.33 16.34 -3.99 -0.07 -18.39 16 17 N -0.71 -14.02 5.48 -469.95 -2.57 -16.60 16 18 C 0.10 1.25 6.15 85.63 0.53 1.78 16 19 C 0.52 6.64 8.17 87.66 0.72 7.36 16 20 N -0.83 -3.34 8.87 -173.54 -1.54 -4.88 16 21 O -0.58 -12.57 16.50 -3.04 -0.05 -12.62 16 22 C -0.03 -0.69 9.53 22.51 0.21 -0.48 16 23 C -0.17 -5.40 9.97 22.33 0.22 -5.17 16 24 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 25 H 0.01 0.34 7.64 -2.38 -0.02 0.32 16 26 H 0.01 0.33 7.66 -2.38 -0.02 0.32 16 27 H 0.12 5.14 6.28 -2.91 -0.02 5.12 16 28 H 0.14 4.44 7.64 -2.91 -0.02 4.41 16 29 H 0.42 7.70 5.46 -92.71 -0.51 7.19 16 30 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.42 -0.97 8.83 -92.71 -0.82 -1.79 16 33 H 0.41 1.13 8.93 -92.70 -0.83 0.30 16 34 H 0.17 2.96 6.39 -2.91 -0.02 2.94 16 35 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -75.18 312.88 0.01 -75.16 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -0.98 Total: 11.91 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 3.83 Total: -8.91 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -3.83 Total: -75.42 kcal Atomic # 8 Polarization: -46.91 SS G_CDS: -1.03 Total: -47.94 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -75.18 0.01 -75.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339332600.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.861 kcal (2) G-P(sol) polarization free energy of solvation -75.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds