Wall clock time and date at job start Mon Mar 30 2020 23:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 O 1.42899 * 109.46876 * 179.72213 * 9 7 2 11 11 C 1.35910 * 116.99557 * 179.97438 * 10 9 7 12 12 C 1.38848 * 119.98745 * 359.72671 * 11 10 9 13 13 C 1.38249 * 120.23720 * 179.72665 * 12 11 10 14 14 C 1.38006 * 120.20834 * 0.54298 * 13 12 11 15 15 C 1.39561 * 119.96125 * 359.73135 * 14 13 12 16 16 C 1.47863 * 120.11496 * 180.02562 * 15 14 13 17 17 O 1.21554 * 120.00088 * 179.97438 * 16 15 14 18 18 N 1.34778 * 119.99985 * 359.97438 * 16 15 14 19 19 C 1.46494 * 119.99870 * 180.02562 * 18 16 15 20 20 C 1.50708 * 109.46994 * 180.02562 * 19 18 16 21 21 N 1.34776 * 119.99966 * 179.97438 * 20 19 18 22 22 O 1.21280 * 119.99830 * 359.97438 * 20 19 18 23 23 C 1.38464 * 119.98206 * 179.97438 * 11 10 9 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.08001 * 119.87767 * 359.97438 * 12 11 10 28 28 H 1.07999 * 119.89336 * 180.25017 * 13 12 11 29 29 H 1.07995 * 120.01444 * 179.74898 * 14 13 12 30 30 H 0.96995 * 119.99727 * 359.97438 * 18 16 15 31 31 H 1.09004 * 109.47029 * 299.99725 * 19 18 16 32 32 H 1.09000 * 109.47110 * 60.00347 * 19 18 16 33 33 H 0.97006 * 119.99780 * 359.97438 * 21 20 19 34 34 H 0.97001 * 119.99966 * 179.97438 * 21 20 19 35 35 H 1.07992 * 120.10149 * 359.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 8 3.9878 -2.5414 0.0104 11 6 5.3352 -2.7194 0.0159 12 6 6.1807 -1.6181 0.0110 13 6 7.5521 -1.7932 0.0222 14 6 8.0898 -3.0642 0.0270 15 6 7.2478 -4.1772 0.0263 16 6 7.8203 -5.5405 0.0320 17 8 7.0851 -6.5084 0.0318 18 7 9.1574 -5.7099 0.0375 19 6 9.7245 -7.0606 0.0426 20 6 11.2291 -6.9736 0.0487 21 7 11.9692 -8.1000 0.0547 22 8 11.7739 -5.8900 0.0484 23 6 5.8641 -3.9991 0.0211 24 1 -0.4849 0.8400 0.0004 25 1 3.8786 -0.6821 -0.8838 26 1 3.8711 -0.6785 0.8962 27 1 5.7656 -0.6211 0.0024 28 1 8.2046 -0.9326 0.0224 29 1 9.1615 -3.1973 0.0317 30 1 9.7441 -4.9375 0.0372 31 1 9.3881 -7.5925 0.9325 32 1 9.3949 -7.5964 -0.8475 33 1 11.5334 -8.9666 0.0553 34 1 12.9376 -8.0440 0.0583 35 1 5.2075 -4.8565 0.0213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339334908.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:06 Heat of formation + Delta-G solvation = -86.857944 kcal Electronic energy + Delta-G solvation = -20158.773319 eV Core-core repulsion = 16736.129529 eV Total energy + Delta-G solvation = -3422.643790 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59292 -39.78630 -38.86885 -36.67008 -34.73028 -34.28753 -32.87232 -31.16539 -30.26618 -28.25373 -27.89067 -24.03973 -22.32917 -22.08245 -21.21572 -20.30067 -18.78143 -17.95858 -17.20003 -16.76504 -16.21190 -16.18233 -15.86946 -15.68858 -15.07425 -15.00594 -14.65982 -14.27522 -14.08872 -13.65356 -13.45902 -13.04933 -12.84209 -12.33005 -12.21557 -11.69609 -11.16606 -11.14483 -10.92154 -10.64252 -10.32990 -10.30849 -10.09314 -10.00997 -9.45636 -9.38757 -8.86336 -8.77261 -7.81795 -6.25885 -4.28226 0.95118 1.64534 2.01384 2.55193 2.88594 3.15255 3.19455 3.21114 3.23123 4.03158 4.06176 4.21892 4.26993 4.67522 4.88086 4.92248 5.02046 5.04222 5.15874 5.36816 5.62261 5.70265 5.98743 6.10240 6.17379 6.24193 6.38407 6.51679 6.63505 6.67328 6.68884 6.88156 7.28191 7.34520 7.62066 7.93131 8.03510 8.46674 8.84107 9.29416 10.86411 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.047389 B = 0.002978 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.718274 B = 9401.475848 C = 9971.740243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.078 3.922 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.087 0.913 9 C 0.167 3.833 10 O -0.298 6.298 11 C 0.143 3.857 12 C -0.188 4.188 13 C -0.086 4.086 14 C -0.141 4.141 15 C -0.104 4.104 16 C 0.569 3.431 17 O -0.534 6.534 18 N -0.720 5.720 19 C 0.099 3.901 20 C 0.515 3.485 21 N -0.850 5.850 22 O -0.539 6.539 23 C -0.101 4.101 24 H 0.270 0.730 25 H 0.016 0.984 26 H 0.020 0.980 27 H 0.134 0.866 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.413 0.587 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.406 0.594 34 H 0.406 0.594 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.342 -12.186 0.114 27.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.700 3.300 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.105 0.895 9 C 0.093 3.907 10 O -0.211 6.211 11 C 0.095 3.905 12 C -0.207 4.207 13 C -0.104 4.104 14 C -0.160 4.160 15 C -0.107 4.107 16 C 0.357 3.643 17 O -0.411 6.411 18 N -0.377 5.377 19 C -0.029 4.029 20 C 0.299 3.701 21 N -0.414 5.414 22 O -0.415 6.415 23 C -0.121 4.121 24 H 0.080 0.920 25 H 0.033 0.967 26 H 0.038 0.962 27 H 0.152 0.848 28 H 0.145 0.855 29 H 0.140 0.860 30 H 0.252 0.748 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.235 0.765 34 H 0.237 0.763 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 23.641 -12.116 0.115 26.565 hybrid contribution 0.965 1.087 -0.007 1.454 sum 24.606 -11.029 0.108 26.965 Atomic orbital electron populations 1.69850 1.06033 1.27442 1.49043 1.24712 0.94854 0.98710 0.94271 0.86884 0.80405 0.83697 0.79033 1.19602 1.20407 1.18950 1.20768 0.87356 0.95860 1.52763 0.89460 1.21053 0.96724 0.77034 0.95878 1.86204 1.15722 1.33133 1.85992 1.19137 0.84964 0.93165 0.93269 1.21644 0.94194 0.99270 1.05608 1.20825 0.94397 0.96860 0.98348 1.21021 0.98826 0.92123 1.04027 1.19369 0.93511 0.91898 1.05955 1.18278 0.81240 0.89211 0.75560 1.90780 1.59491 1.41502 1.49334 1.45591 1.07202 1.08273 1.76641 1.21040 0.89620 0.86924 1.05274 1.20588 0.89992 0.84446 0.75102 1.43726 1.11051 1.08805 1.77804 1.90767 1.73590 1.27799 1.49340 1.20453 0.93549 0.95962 1.02098 0.92004 0.96668 0.96212 0.84843 0.85498 0.85962 0.74800 0.87985 0.87981 0.76546 0.76256 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.87 20.41 27.47 -169.99 -4.67 15.74 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 7 C -0.53 -15.27 9.99 -34.44 -0.34 -15.61 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 9 C 0.17 4.07 3.56 36.01 0.13 4.19 16 10 O -0.30 -6.98 10.12 -19.46 -0.20 -7.17 16 11 C 0.14 2.77 6.68 -39.27 -0.26 2.50 16 12 C -0.19 -3.17 9.03 -39.35 -0.36 -3.53 16 13 C -0.09 -1.17 10.03 -39.66 -0.40 -1.57 16 14 C -0.14 -1.81 9.54 -39.17 -0.37 -2.19 16 15 C -0.10 -1.56 5.87 -104.99 -0.62 -2.18 16 16 C 0.57 8.01 7.77 -12.32 -0.10 7.91 16 17 O -0.53 -8.96 16.35 5.32 0.09 -8.88 16 18 N -0.72 -7.68 5.48 -62.42 -0.34 -8.02 16 19 C 0.10 0.75 6.15 -5.19 -0.03 0.72 16 20 C 0.51 3.76 8.17 -10.98 -0.09 3.67 16 21 N -0.85 -2.70 8.87 31.22 0.28 -2.43 16 22 O -0.54 -6.08 16.50 5.56 0.09 -5.99 16 23 C -0.10 -1.79 9.53 -39.02 -0.37 -2.16 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.36 7.08 -51.93 -0.37 -0.01 16 26 H 0.02 0.47 6.72 -51.93 -0.35 0.12 16 27 H 0.13 2.24 6.28 -52.49 -0.33 1.91 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 29 H 0.12 1.21 6.40 -52.49 -0.34 0.88 16 30 H 0.41 4.17 5.47 -40.82 -0.22 3.94 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.41 0.11 8.83 -40.82 -0.36 -0.25 16 34 H 0.41 0.99 8.93 -40.82 -0.36 0.62 16 35 H 0.14 2.58 7.65 -52.49 -0.40 2.18 16 LS Contribution 309.35 15.07 4.66 4.66 Total: -1.00 -35.14 309.35 -5.81 -40.96 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -3.59 Total: 3.04 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -2.91 Total: -6.11 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.71 Total: -36.25 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.02 Total: -22.04 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.14 -5.81 -40.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339334908.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.902 kcal (2) G-P(sol) polarization free energy of solvation -35.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds