Wall clock time and date at job start Mon Mar 30 2020 23:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 O 1.42899 * 109.46876 * 179.72213 * 9 7 2 11 11 C 1.35910 * 116.99557 * 179.97438 * 10 9 7 12 12 C 1.38848 * 119.98745 * 359.72671 * 11 10 9 13 13 C 1.38249 * 120.23720 * 179.72665 * 12 11 10 14 14 C 1.38006 * 120.20834 * 0.54298 * 13 12 11 15 15 C 1.39561 * 119.96125 * 359.73135 * 14 13 12 16 16 C 1.47863 * 120.11496 * 180.02562 * 15 14 13 17 17 O 1.21554 * 120.00088 * 179.97438 * 16 15 14 18 18 N 1.34778 * 119.99985 * 359.97438 * 16 15 14 19 19 C 1.46494 * 119.99870 * 180.02562 * 18 16 15 20 20 C 1.50708 * 109.46994 * 180.02562 * 19 18 16 21 21 N 1.34776 * 119.99966 * 179.97438 * 20 19 18 22 22 O 1.21280 * 119.99830 * 359.97438 * 20 19 18 23 23 C 1.38464 * 119.98206 * 179.97438 * 11 10 9 24 24 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.08001 * 119.87767 * 359.97438 * 12 11 10 28 28 H 1.07999 * 119.89336 * 180.25017 * 13 12 11 29 29 H 1.07995 * 120.01444 * 179.74898 * 14 13 12 30 30 H 0.96995 * 119.99727 * 359.97438 * 18 16 15 31 31 H 1.09004 * 109.47029 * 299.99725 * 19 18 16 32 32 H 1.09000 * 109.47110 * 60.00347 * 19 18 16 33 33 H 0.97006 * 119.99780 * 359.97438 * 21 20 19 34 34 H 0.97001 * 119.99966 * 179.97438 * 21 20 19 35 35 H 1.07992 * 120.10149 * 359.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 8 3.9878 -2.5414 0.0104 11 6 5.3352 -2.7194 0.0159 12 6 6.1807 -1.6181 0.0110 13 6 7.5521 -1.7932 0.0222 14 6 8.0898 -3.0642 0.0270 15 6 7.2478 -4.1772 0.0263 16 6 7.8203 -5.5405 0.0320 17 8 7.0851 -6.5084 0.0318 18 7 9.1574 -5.7099 0.0375 19 6 9.7245 -7.0606 0.0426 20 6 11.2291 -6.9736 0.0487 21 7 11.9692 -8.1000 0.0547 22 8 11.7739 -5.8900 0.0484 23 6 5.8641 -3.9991 0.0211 24 1 -0.4849 0.8400 0.0004 25 1 3.8786 -0.6821 -0.8838 26 1 3.8711 -0.6785 0.8962 27 1 5.7656 -0.6211 0.0024 28 1 8.2046 -0.9326 0.0224 29 1 9.1615 -3.1973 0.0317 30 1 9.7441 -4.9375 0.0372 31 1 9.3881 -7.5925 0.9325 32 1 9.3949 -7.5964 -0.8475 33 1 11.5334 -8.9666 0.0553 34 1 12.9376 -8.0440 0.0583 35 1 5.2075 -4.8565 0.0213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339334908.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:06 Heat of formation + Delta-G solvation = -116.584239 kcal Electronic energy + Delta-G solvation = -20160.062348 eV Core-core repulsion = 16736.129529 eV Total energy + Delta-G solvation = -3423.932819 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60092 -40.79231 -40.01816 -38.07975 -35.67736 -35.00628 -34.76292 -32.36307 -31.70251 -30.01017 -28.79837 -25.46808 -23.90112 -23.37777 -21.84286 -21.46262 -19.94485 -19.14240 -18.42827 -17.92224 -17.35345 -17.01012 -16.94569 -16.77851 -16.62271 -16.52301 -15.83343 -15.65969 -15.13933 -14.82601 -14.65153 -14.27425 -13.94340 -13.90888 -13.56096 -13.15566 -12.86491 -12.83974 -12.31939 -11.98572 -11.81057 -11.48256 -11.28858 -11.21695 -10.91148 -10.74502 -10.39264 -10.02514 -9.21945 -8.43569 -6.55320 -0.26133 0.40997 1.32241 1.36201 1.46120 1.46391 1.73792 1.74671 2.25236 2.48738 2.65118 2.80898 2.88774 3.58860 3.83198 3.88503 4.06020 4.12520 4.25426 4.31142 4.35936 4.47904 4.51750 4.77079 4.89318 5.12893 5.17100 5.20784 5.31675 5.43080 5.64424 5.82189 5.96499 6.31909 6.35236 6.49212 6.70982 7.01145 7.08589 7.21732 8.73155 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.047389 B = 0.002978 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.718274 B = 9401.475848 C = 9971.740243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.017 3.983 3 Si 0.955 3.045 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.237 1.237 7 C -0.558 4.558 8 H 0.031 0.969 9 C 0.180 3.820 10 O -0.335 6.335 11 C 0.104 3.896 12 C -0.192 4.192 13 C -0.073 4.073 14 C -0.117 4.117 15 C -0.107 4.107 16 C 0.569 3.431 17 O -0.569 6.569 18 N -0.705 5.705 19 C 0.093 3.907 20 C 0.519 3.481 21 N -0.826 5.826 22 O -0.581 6.581 23 C -0.120 4.120 24 H 0.276 0.724 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.137 0.863 28 H 0.172 0.828 29 H 0.163 0.837 30 H 0.418 0.582 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.422 0.578 34 H 0.414 0.586 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.759 -10.943 0.127 30.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.182 4.182 3 Si 0.775 3.225 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.160 1.160 7 C -0.596 4.596 8 H 0.050 0.950 9 C 0.107 3.893 10 O -0.249 6.249 11 C 0.058 3.942 12 C -0.211 4.211 13 C -0.091 4.091 14 C -0.136 4.136 15 C -0.111 4.111 16 C 0.357 3.643 17 O -0.449 6.449 18 N -0.361 5.361 19 C -0.033 4.033 20 C 0.303 3.697 21 N -0.391 5.391 22 O -0.461 6.461 23 C -0.139 4.139 24 H 0.086 0.914 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.154 0.846 28 H 0.189 0.811 29 H 0.180 0.820 30 H 0.258 0.742 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.254 0.746 34 H 0.246 0.754 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 28.124 -10.954 0.129 30.182 hybrid contribution -0.306 0.478 -0.012 0.568 sum 27.817 -10.476 0.117 29.725 Atomic orbital electron populations 1.70014 1.08358 1.29168 1.49897 1.25850 0.95879 1.03510 0.92943 0.85622 0.79749 0.76994 0.80153 1.17990 1.19650 1.16025 1.21034 0.90223 0.94335 1.54000 0.95025 1.20725 0.93632 0.78177 0.96811 1.86116 1.18753 1.32376 1.87645 1.19391 0.83539 0.94775 0.96471 1.21803 0.95504 0.98306 1.05479 1.21294 0.93269 0.98559 0.95970 1.21481 1.00458 0.91051 1.00586 1.19549 0.92535 0.93522 1.05448 1.18149 0.82168 0.88374 0.75591 1.90769 1.60539 1.42301 1.51297 1.45483 1.05887 1.09964 1.74769 1.21283 0.90012 0.85432 1.06609 1.20468 0.89740 0.84671 0.74834 1.43554 1.11370 1.08585 1.75607 1.90751 1.74097 1.29425 1.51838 1.20403 0.94888 0.94910 1.03738 0.91446 0.95107 0.94998 0.84562 0.81098 0.81998 0.74186 0.86677 0.86669 0.74637 0.75357 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.26 13.96 21.45 0.30 -57.96 16 2 C 0.02 1.00 5.47 84.66 0.46 1.47 16 3 Si 0.95 41.55 27.47 68.60 1.88 43.44 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.24 -9.21 6.54 99.48 0.65 -8.56 16 7 C -0.56 -33.88 9.99 25.60 0.26 -33.63 16 8 H 0.03 2.18 8.06 -2.91 -0.02 2.15 16 9 C 0.18 8.96 3.56 71.24 0.25 9.21 16 10 O -0.33 -16.51 10.12 -92.53 -0.94 -17.45 16 11 C 0.10 4.12 6.68 22.47 0.15 4.27 16 12 C -0.19 -6.09 9.03 22.42 0.20 -5.88 16 13 C -0.07 -1.67 10.03 22.22 0.22 -1.45 16 14 C -0.12 -2.57 9.54 22.53 0.21 -2.35 16 15 C -0.11 -3.09 5.87 -20.10 -0.12 -3.21 16 16 C 0.57 15.38 7.77 86.79 0.67 16.05 16 17 O -0.57 -19.18 16.35 -3.89 -0.06 -19.24 16 18 N -0.71 -13.35 5.48 -469.68 -2.57 -15.92 16 19 C 0.09 1.19 6.15 85.64 0.53 1.72 16 20 C 0.52 6.23 8.17 87.66 0.72 6.94 16 21 N -0.83 -2.85 8.87 -173.53 -1.54 -4.39 16 22 O -0.58 -11.73 16.50 -3.03 -0.05 -11.78 16 23 C -0.12 -4.38 9.53 22.63 0.22 -4.16 16 24 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 25 H 0.03 1.42 7.08 -2.38 -0.02 1.41 16 26 H 0.03 1.49 6.72 -2.39 -0.02 1.48 16 27 H 0.14 4.21 6.28 -2.91 -0.02 4.19 16 28 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 29 H 0.16 2.32 6.40 -2.91 -0.02 2.30 16 30 H 0.42 7.07 5.47 -92.71 -0.51 6.56 16 31 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.42 -1.09 8.83 -92.70 -0.82 -1.91 16 34 H 0.41 0.83 8.93 -92.71 -0.83 0.00 16 35 H 0.12 4.79 7.65 -2.91 -0.02 4.77 16 Total: -1.00 -82.43 309.35 -0.24 -82.66 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -1.04 Total: 11.67 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 3.78 Total: -11.02 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -3.81 Total: -78.28 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -1.05 Total: -48.47 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.88 Total: 43.44 kcal Total: -82.43 -0.24 -82.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339334908.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.921 kcal (2) G-P(sol) polarization free energy of solvation -82.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds