Wall clock time and date at job start Mon Mar 30 2020 23:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 120.00281 * 2 1 4 4 H 1.48505 * 109.46927 * 269.99694 * 3 2 1 5 5 H 1.48501 * 109.47082 * 29.99164 * 3 2 1 6 6 H 1.48493 * 109.47325 * 149.99618 * 3 2 1 7 7 C 1.38951 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00095 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00186 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00312 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00100 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00069 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.47310 * 179.97438 * 12 10 9 14 14 C 1.34695 * 123.06819 * 89.99803 * 13 12 10 15 15 O 1.21233 * 126.39055 * 11.92442 * 14 13 12 16 16 C 1.53783 * 107.22043 * 191.90320 * 14 13 12 17 17 H 1.09001 * 113.73509 * 212.29297 * 16 14 13 18 18 C 1.53088 * 104.78916 * 87.26099 * 16 14 13 19 19 C 1.48932 * 113.36762 * 214.76619 * 18 16 14 20 20 C 1.28900 * 124.81897 * 17.41290 * 19 18 16 21 21 C 1.49605 * 123.47731 * 357.81378 * 20 19 18 22 22 C 1.49325 * 113.58556 * 11.10960 * 21 20 19 23 23 H 1.09002 * 107.41656 * 205.20059 * 22 21 20 24 24 C 1.35183 * 123.06978 * 270.00358 * 13 12 10 25 25 O 1.21222 * 126.85861 * 9.73095 * 24 13 12 26 26 H 0.96996 * 120.00280 * 0.02562 * 1 2 3 27 27 H 0.97007 * 119.99376 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.47241 * 59.99699 * 12 10 9 29 29 H 1.08998 * 109.47186 * 299.99916 * 12 10 9 30 30 H 1.09005 * 108.70168 * 335.77319 * 18 16 14 31 31 H 1.09004 * 108.69985 * 93.89069 * 18 16 14 32 32 H 1.08004 * 117.56066 * 197.45129 * 19 18 16 33 33 H 1.08004 * 118.16507 * 177.76108 * 20 19 18 34 34 H 1.09002 * 108.63914 * 250.09009 * 21 20 19 35 35 H 1.09005 * 108.64122 * 132.12684 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4401 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0010 13 7 2.1957 -5.9765 0.0017 14 6 2.6725 -6.5351 1.1309 15 8 2.2534 -6.3562 2.2543 16 6 3.8472 -7.4426 0.7291 17 1 3.9586 -8.3225 1.3628 18 6 5.0696 -6.5211 0.7262 19 6 6.0642 -6.8624 -0.3285 20 6 5.8214 -7.5985 -1.3585 21 6 4.5012 -8.2556 -1.6106 22 6 3.4130 -7.7758 -0.7076 23 1 2.6707 -8.5711 -0.6401 24 6 2.6760 -6.5371 -1.1307 25 8 2.5388 -6.1232 -2.2618 26 1 -0.4850 0.8400 -0.0004 27 1 0.3533 -2.3906 0.0005 28 1 0.6181 -4.9209 -0.8897 29 1 0.6161 -4.9205 0.8903 30 1 4.7340 -5.4956 0.5716 31 1 5.5580 -6.5855 1.6986 32 1 7.0624 -6.4641 -0.2218 33 1 6.6139 -7.7471 -2.0771 34 1 4.6162 -9.3312 -1.4766 35 1 4.2077 -8.0632 -2.6426 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339603753.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:13 Heat of formation + Delta-G solvation = -77.715450 kcal Electronic energy + Delta-G solvation = -22000.316689 eV Core-core repulsion = 18578.069347 eV Total energy + Delta-G solvation = -3422.247342 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.17989 -38.41536 -38.25564 -37.29363 -35.39465 -33.99555 -32.15518 -31.37636 -31.22357 -28.04251 -25.00403 -24.81859 -23.65077 -21.84425 -20.30469 -19.05677 -18.07513 -17.95588 -16.92532 -16.65099 -16.25037 -15.86311 -15.31440 -14.88333 -14.47210 -14.21980 -14.13542 -13.97923 -13.74812 -13.36464 -13.26294 -12.90077 -12.62040 -12.41940 -11.93869 -11.72137 -11.61731 -11.28299 -11.08026 -10.62804 -10.43032 -10.30066 -10.09291 -9.90051 -9.67786 -9.58779 -9.02001 -8.41589 -8.05572 -6.47848 -3.89097 1.71398 2.28712 2.52724 2.90258 3.14412 3.24256 3.30238 3.73168 3.86392 4.12576 4.20127 4.24875 4.59356 4.88302 4.95555 5.01831 5.10763 5.14894 5.21409 5.33231 5.53973 5.56679 5.58170 5.67966 5.72843 5.78283 6.00801 6.10107 6.18934 6.56221 6.90210 6.98955 7.46945 7.49715 7.90799 8.00089 8.50325 9.09249 9.42447 9.91794 10.69351 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025662 B = 0.004865 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.828817 B = 5753.753301 C = 5971.508826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.301 4.301 8 H 0.104 0.896 9 N -0.551 5.551 10 C 0.425 3.575 11 O -0.587 6.587 12 C 0.086 3.914 13 N -0.560 5.560 14 C 0.533 3.467 15 O -0.477 6.477 16 C -0.099 4.099 17 H 0.131 0.869 18 C -0.097 4.097 19 C -0.138 4.138 20 C -0.162 4.162 21 C -0.069 4.069 22 C -0.124 4.124 23 H 0.111 0.889 24 C 0.544 3.456 25 O -0.465 6.465 26 H 0.273 0.727 27 H 0.394 0.606 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.441 -17.060 -0.684 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.187 5.187 10 C 0.210 3.790 11 O -0.473 6.473 12 C -0.039 4.039 13 N -0.302 5.302 14 C 0.321 3.679 15 O -0.348 6.348 16 C -0.121 4.121 17 H 0.149 0.851 18 C -0.134 4.134 19 C -0.156 4.156 20 C -0.180 4.180 21 C -0.107 4.107 22 C -0.145 4.145 23 H 0.129 0.871 24 C 0.332 3.668 25 O -0.335 6.335 26 H 0.083 0.917 27 H 0.228 0.772 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.755 -16.521 -0.689 17.508 hybrid contribution -0.338 1.107 -0.006 1.157 sum 5.417 -15.414 -0.695 16.353 Atomic orbital electron populations 1.69607 1.05982 1.28415 1.49782 1.25296 0.95664 0.99837 0.96918 0.85819 0.79232 0.80552 0.78470 1.20281 1.20795 1.19366 1.19709 0.93408 0.81993 1.47925 0.87821 1.41776 1.09297 1.04437 1.63169 1.19882 0.88587 0.84900 0.85624 1.90499 1.13523 1.86872 1.56363 1.21529 0.91366 0.85746 1.05289 1.46744 1.42586 1.31959 1.08942 1.21555 0.82626 0.80071 0.83608 1.90739 1.61331 1.61919 1.20801 1.22632 0.94433 0.99233 0.95802 0.85137 1.20261 0.93043 1.00567 0.99520 1.21503 0.99338 0.98835 0.95941 1.21678 0.97780 1.00273 0.98220 1.19301 0.91383 1.00082 0.99894 1.21026 0.99923 0.97478 0.96056 0.87081 1.20478 0.77783 0.84592 0.83921 1.90745 1.56000 1.66577 1.20155 0.91675 0.77237 0.87643 0.87342 0.87946 0.89661 0.87324 0.87071 0.89505 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 9 N -0.55 -14.19 5.29 -10.97 -0.06 -14.25 16 10 C 0.43 10.31 7.85 -10.99 -0.09 10.23 16 11 O -0.59 -15.98 15.21 5.55 0.08 -15.90 16 12 C 0.09 1.60 6.15 -5.19 -0.03 1.57 16 13 N -0.56 -9.63 2.03 -115.47 -0.23 -9.87 16 14 C 0.53 8.60 6.72 -9.46 -0.06 8.53 16 15 O -0.48 -8.94 17.58 5.60 0.10 -8.85 16 16 C -0.10 -1.18 4.07 -89.78 -0.37 -1.54 16 17 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 18 C -0.10 -1.29 5.18 -28.68 -0.15 -1.44 16 19 C -0.14 -1.64 9.75 -36.31 -0.35 -1.99 16 20 C -0.16 -1.72 9.88 -35.99 -0.36 -2.08 16 21 C -0.07 -0.67 5.67 -30.22 -0.17 -0.84 16 22 C -0.12 -1.39 2.39 -93.43 -0.22 -1.62 16 23 H 0.11 0.91 8.11 -51.93 -0.42 0.49 16 24 C 0.54 8.84 7.43 -11.04 -0.08 8.76 16 25 O -0.47 -9.02 17.39 5.61 0.10 -8.92 16 26 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 28 H 0.11 1.76 8.02 -51.93 -0.42 1.35 16 29 H 0.11 1.83 7.83 -51.93 -0.41 1.42 16 30 H 0.10 1.85 6.63 -51.93 -0.34 1.50 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.11 1.16 8.06 -52.48 -0.42 0.73 16 33 H 0.11 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.92 7.79 -51.93 -0.40 0.51 16 LS Contribution 303.98 15.07 4.58 4.58 Total: -1.00 -34.13 303.98 -5.79 -39.93 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -3.94 Total: 9.29 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -2.12 Total: 11.54 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.43 Total: -47.82 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: 0.28 Total: -33.67 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.13 -5.79 -39.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339603753.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.789 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds