Wall clock time and date at job start Mon Mar 30 2020 23:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 120.00281 * 2 1 4 4 H 1.48505 * 109.46927 * 269.99694 * 3 2 1 5 5 H 1.48501 * 109.47082 * 29.99164 * 3 2 1 6 6 H 1.48493 * 109.47325 * 149.99618 * 3 2 1 7 7 C 1.38951 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00095 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00186 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00312 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00100 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00069 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.47310 * 179.97438 * 12 10 9 14 14 C 1.34695 * 123.06819 * 89.99803 * 13 12 10 15 15 O 1.21233 * 126.39055 * 11.92442 * 14 13 12 16 16 C 1.53783 * 107.22043 * 191.90320 * 14 13 12 17 17 H 1.09001 * 113.73509 * 212.29297 * 16 14 13 18 18 C 1.53088 * 104.78916 * 87.26099 * 16 14 13 19 19 C 1.48932 * 113.36762 * 214.76619 * 18 16 14 20 20 C 1.28900 * 124.81897 * 17.41290 * 19 18 16 21 21 C 1.49605 * 123.47731 * 357.81378 * 20 19 18 22 22 C 1.49325 * 113.58556 * 11.10960 * 21 20 19 23 23 H 1.09002 * 107.41656 * 205.20059 * 22 21 20 24 24 C 1.35183 * 123.06978 * 270.00358 * 13 12 10 25 25 O 1.21222 * 126.85861 * 9.73095 * 24 13 12 26 26 H 0.96996 * 120.00280 * 0.02562 * 1 2 3 27 27 H 0.97007 * 119.99376 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.47241 * 59.99699 * 12 10 9 29 29 H 1.08998 * 109.47186 * 299.99916 * 12 10 9 30 30 H 1.09005 * 108.70168 * 335.77319 * 18 16 14 31 31 H 1.09004 * 108.69985 * 93.89069 * 18 16 14 32 32 H 1.08004 * 117.56066 * 197.45129 * 19 18 16 33 33 H 1.08004 * 118.16507 * 177.76108 * 20 19 18 34 34 H 1.09002 * 108.63914 * 250.09009 * 21 20 19 35 35 H 1.09005 * 108.64122 * 132.12684 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4401 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2438 -4.8629 0.0010 13 7 2.1957 -5.9765 0.0017 14 6 2.6725 -6.5351 1.1309 15 8 2.2534 -6.3562 2.2543 16 6 3.8472 -7.4426 0.7291 17 1 3.9586 -8.3225 1.3628 18 6 5.0696 -6.5211 0.7262 19 6 6.0642 -6.8624 -0.3285 20 6 5.8214 -7.5985 -1.3585 21 6 4.5012 -8.2556 -1.6106 22 6 3.4130 -7.7758 -0.7076 23 1 2.6707 -8.5711 -0.6401 24 6 2.6760 -6.5371 -1.1307 25 8 2.5388 -6.1232 -2.2618 26 1 -0.4850 0.8400 -0.0004 27 1 0.3533 -2.3906 0.0005 28 1 0.6181 -4.9209 -0.8897 29 1 0.6161 -4.9205 0.8903 30 1 4.7340 -5.4956 0.5716 31 1 5.5580 -6.5855 1.6986 32 1 7.0624 -6.4641 -0.2218 33 1 6.6139 -7.7471 -2.0771 34 1 4.6162 -9.3312 -1.4766 35 1 4.2077 -8.0632 -2.6426 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339603753.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:12 Heat of formation + Delta-G solvation = -102.080816 kcal Electronic energy + Delta-G solvation = -22001.373251 eV Core-core repulsion = 18578.069347 eV Total energy + Delta-G solvation = -3423.303904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.38335 -40.15987 -39.69808 -38.45565 -36.78537 -36.02599 -33.55945 -33.08699 -32.23080 -29.53703 -26.78004 -26.07480 -24.76141 -22.93171 -21.92428 -20.65202 -19.96114 -19.10718 -18.37336 -18.09380 -17.43107 -17.03085 -16.79177 -16.52010 -16.01411 -15.81275 -15.64019 -15.39878 -15.22698 -14.55155 -14.44669 -14.23574 -13.68323 -13.61068 -13.46219 -13.37176 -12.96944 -12.91705 -12.52875 -12.28763 -12.16048 -11.61513 -11.56033 -11.43244 -11.16800 -10.95737 -10.33510 -10.13838 -9.86229 -8.55601 -6.05817 0.45788 1.21658 1.31630 1.37747 1.44378 1.50954 1.68273 1.85358 2.24453 2.79339 3.03883 3.10347 3.12762 3.32482 3.70279 4.00908 4.02534 4.06579 4.17643 4.18498 4.24748 4.33073 4.45059 4.53696 4.77160 4.85476 4.99164 5.08132 5.19967 5.31976 5.71210 5.72568 5.85465 6.04970 6.22978 6.43652 6.67611 6.99767 7.37863 7.91493 8.61452 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025662 B = 0.004865 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.828817 B = 5753.753301 C = 5971.508826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.266 1.266 6 H -0.273 1.273 7 C -0.339 4.339 8 H 0.078 0.922 9 N -0.560 5.560 10 C 0.419 3.581 11 O -0.622 6.622 12 C 0.092 3.908 13 N -0.569 5.569 14 C 0.525 3.475 15 O -0.510 6.510 16 C -0.078 4.078 17 H 0.179 0.821 18 C -0.095 4.095 19 C -0.165 4.165 20 C -0.151 4.151 21 C -0.072 4.072 22 C -0.115 4.115 23 H 0.157 0.843 24 C 0.533 3.467 25 O -0.506 6.506 26 H 0.281 0.719 27 H 0.399 0.601 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.868 -19.145 -0.919 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.191 1.191 6 H -0.198 1.198 7 C -0.468 4.468 8 H 0.096 0.904 9 N -0.197 5.197 10 C 0.206 3.794 11 O -0.509 6.509 12 C -0.034 4.034 13 N -0.312 5.312 14 C 0.316 3.684 15 O -0.383 6.383 16 C -0.098 4.098 17 H 0.196 0.804 18 C -0.133 4.133 19 C -0.183 4.183 20 C -0.169 4.169 21 C -0.109 4.109 22 C -0.135 4.135 23 H 0.174 0.826 24 C 0.325 3.675 25 O -0.379 6.379 26 H 0.090 0.910 27 H 0.233 0.767 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.130 0.870 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.168 -18.634 -0.924 19.650 hybrid contribution -0.472 1.751 0.043 1.813 sum 5.696 -16.883 -0.881 17.840 Atomic orbital electron populations 1.69662 1.06875 1.29678 1.49262 1.26102 0.96602 1.02521 0.95689 0.84887 0.77858 0.76540 0.78783 1.19465 1.19085 1.19821 1.19659 0.92692 0.83776 1.50654 0.90368 1.41834 1.09447 1.04555 1.63822 1.20886 0.88568 0.86342 0.83627 1.90477 1.15356 1.87773 1.57330 1.21410 0.91448 0.83534 1.06995 1.47057 1.42573 1.31345 1.10202 1.22429 0.83057 0.80159 0.82766 1.90713 1.62432 1.63255 1.21878 1.22815 0.90958 0.99300 0.96775 0.80400 1.20173 0.94157 0.97948 1.00989 1.21495 0.99383 1.00703 0.96695 1.22033 0.98869 0.98641 0.97318 1.19487 0.89794 1.02603 0.99011 1.21192 1.01199 0.95731 0.95404 0.82572 1.21515 0.77234 0.85756 0.83006 1.90716 1.57530 1.68026 1.21584 0.90957 0.76714 0.85776 0.85605 0.93520 0.88532 0.86950 0.85227 0.84757 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.99 13.05 21.66 0.28 -49.71 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 3 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.34 -19.81 9.68 84.04 0.81 -18.99 16 8 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 9 N -0.56 -30.01 5.29 -306.99 -1.62 -31.63 16 10 C 0.42 21.20 7.85 87.66 0.69 21.88 16 11 O -0.62 -35.69 15.21 -3.07 -0.05 -35.74 16 12 C 0.09 3.48 6.15 85.63 0.53 4.01 16 13 N -0.57 -19.51 2.03 -755.86 -1.53 -21.05 16 14 C 0.52 16.53 6.72 88.68 0.60 17.13 16 15 O -0.51 -19.02 17.58 -2.88 -0.05 -19.07 16 16 C -0.08 -1.63 4.07 -10.25 -0.04 -1.67 16 17 H 0.18 2.11 8.14 -2.39 -0.02 2.09 16 18 C -0.10 -2.49 5.18 29.33 0.15 -2.34 16 19 C -0.16 -3.68 9.75 27.20 0.27 -3.41 16 20 C -0.15 -2.77 9.88 27.40 0.27 -2.50 16 21 C -0.07 -1.09 5.67 28.33 0.16 -0.93 16 22 C -0.11 -2.19 2.39 -12.62 -0.03 -2.22 16 23 H 0.16 1.70 8.11 -2.39 -0.02 1.68 16 24 C 0.53 16.89 7.43 87.44 0.65 17.54 16 25 O -0.51 -19.68 17.39 -2.85 -0.05 -19.73 16 26 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 27 H 0.40 20.11 7.90 -92.70 -0.73 19.38 16 28 H 0.12 4.20 8.02 -2.39 -0.02 4.18 16 29 H 0.13 4.29 7.83 -2.39 -0.02 4.28 16 30 H 0.05 1.76 6.63 -2.38 -0.02 1.75 16 31 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.11 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 1.47 7.79 -2.38 -0.02 1.45 16 Total: -1.00 -78.61 303.98 3.93 -74.68 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.40 Total: 28.06 kcal Atomic # 6 Polarization: 23.99 SS G_CDS: 4.52 Total: 28.51 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -2.87 Total: -102.39 kcal Atomic # 8 Polarization: -74.40 SS G_CDS: -0.15 Total: -74.55 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -78.61 3.93 -74.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339603753.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.397 kcal (2) G-P(sol) polarization free energy of solvation -78.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds