Wall clock time and date at job start Mon Mar 30 2020 23:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 119.99895 * 2 1 4 4 H 1.48505 * 109.47149 * 269.99777 * 3 2 1 5 5 H 1.48501 * 109.47501 * 30.00121 * 3 2 1 6 6 H 1.48501 * 109.46930 * 150.00141 * 3 2 1 7 7 C 1.38956 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99687 * 0.02562 * 7 2 1 9 9 N 1.37091 * 120.00028 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99763 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00656 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47289 * 179.97438 * 12 10 9 14 14 C 1.35836 * 123.25060 * 269.70951 * 13 12 10 15 15 O 1.21232 * 126.88302 * 12.39175 * 14 13 12 16 16 C 1.49756 * 106.29486 * 192.31122 * 14 13 12 17 17 H 1.08997 * 110.77189 * 86.73216 * 16 14 13 18 18 C 1.50681 * 119.04243 * 214.82595 * 16 14 13 19 19 C 1.51434 * 107.49314 * 165.44088 * 18 16 14 20 20 C 1.29879 * 124.36933 * 342.35082 * 19 18 16 21 21 C 1.51439 * 124.35069 * 358.80252 * 20 19 18 22 22 C 1.51414 * 106.89404 * 341.76783 * 21 20 19 23 23 H 1.09001 * 110.32256 * 294.24717 * 22 21 20 24 24 C 1.35840 * 123.25156 * 89.99616 * 13 12 10 25 25 O 1.21235 * 126.88234 * 12.41523 * 24 13 12 26 26 H 0.96997 * 120.00211 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00071 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.47438 * 59.99564 * 12 10 9 29 29 H 1.09004 * 109.47113 * 299.99819 * 12 10 9 30 30 H 1.09003 * 109.22001 * 46.17209 * 18 16 14 31 31 H 1.08996 * 110.21120 * 285.27795 * 18 16 14 32 32 H 1.08001 * 117.81544 * 162.32415 * 19 18 16 33 33 H 1.07990 * 117.82118 * 178.77469 * 20 19 18 34 34 H 1.09004 * 109.96007 * 222.42647 * 21 20 19 35 35 H 1.08997 * 109.96593 * 101.11799 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0011 13 7 6.0491 -3.7518 0.0017 14 6 6.3028 -4.4516 1.1380 15 8 5.9810 -4.1479 2.2666 16 6 7.0581 -5.6748 0.7183 17 1 8.1276 -5.4705 0.6683 18 6 6.8293 -6.9661 1.4603 19 6 7.4177 -8.0825 0.6232 20 6 7.7052 -7.9790 -0.6391 21 6 7.4710 -6.7345 -1.4696 22 6 6.4741 -5.8820 -0.7133 23 1 5.5082 -6.3845 -0.6621 24 6 6.2973 -4.4546 -1.1340 25 8 6.3628 -4.0151 -2.2620 26 1 -0.4850 0.8400 -0.0004 27 1 3.8648 -0.3633 0.0007 28 1 5.9241 -1.8567 0.8910 29 1 5.9240 -1.8567 -0.8890 30 1 5.7581 -7.1217 1.5880 31 1 7.3189 -6.9330 2.4336 32 1 7.6117 -9.0277 1.1084 33 1 8.1405 -8.8374 -1.1289 34 1 7.0639 -7.0079 -2.4431 35 1 8.4066 -6.1897 -1.5958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339603754.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:15 Heat of formation + Delta-G solvation = -69.607584 kcal Electronic energy + Delta-G solvation = -21670.815384 eV Core-core repulsion = 18248.919626 eV Total energy + Delta-G solvation = -3421.895758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.15093 -38.59832 -38.42368 -37.65563 -35.48724 -34.05011 -32.08956 -31.65551 -31.15492 -28.23445 -25.18664 -24.91217 -23.33701 -21.82910 -19.95190 -19.24663 -18.78714 -18.39474 -17.19254 -16.86833 -16.37055 -15.81735 -15.10667 -14.95883 -14.73802 -14.58989 -14.14597 -14.11756 -13.60801 -13.36405 -13.25055 -13.13506 -12.77720 -12.53788 -12.22113 -11.89653 -11.56399 -11.37967 -11.20800 -11.20087 -10.64341 -10.17573 -10.06180 -9.93980 -9.75656 -9.65353 -9.32903 -8.55610 -8.26242 -6.36681 -3.88776 1.64279 1.96940 2.45648 2.73435 3.00200 3.04736 3.13202 3.55314 3.66380 4.06077 4.14898 4.17691 4.52278 4.69222 4.73360 4.87449 4.91366 5.03887 5.11620 5.16115 5.41452 5.43579 5.51877 5.53165 5.58642 5.62469 5.69495 5.79642 5.89179 6.27172 6.59689 6.86048 7.38579 7.47702 7.86509 8.04954 8.49808 8.86405 9.33336 9.68461 10.75887 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034043 B = 0.004369 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.287269 B = 6407.625980 C = 6580.450843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.120 0.880 9 N -0.579 5.579 10 C 0.434 3.566 11 O -0.570 6.570 12 C 0.086 3.914 13 N -0.567 5.567 14 C 0.547 3.453 15 O -0.464 6.464 16 C -0.129 4.129 17 H 0.123 0.877 18 C -0.071 4.071 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.067 4.067 22 C -0.130 4.130 23 H 0.129 0.871 24 C 0.551 3.449 25 O -0.473 6.473 26 H 0.275 0.725 27 H 0.372 0.628 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.976 -11.106 0.016 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.436 4.436 8 H 0.138 0.862 9 N -0.217 5.217 10 C 0.219 3.781 11 O -0.453 6.453 12 C -0.040 4.040 13 N -0.311 5.311 14 C 0.335 3.665 15 O -0.333 6.333 16 C -0.151 4.151 17 H 0.140 0.860 18 C -0.108 4.108 19 C -0.169 4.169 20 C -0.174 4.174 21 C -0.105 4.105 22 C -0.151 4.151 23 H 0.147 0.853 24 C 0.341 3.659 25 O -0.343 6.343 26 H 0.086 0.914 27 H 0.205 0.795 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.108 0.892 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.192 -11.245 0.025 21.387 hybrid contribution 0.356 1.520 0.024 1.562 sum 18.548 -9.725 0.049 20.943 Atomic orbital electron populations 1.69619 1.05687 1.27711 1.48520 1.25054 0.95529 0.98090 0.97283 0.86662 0.79862 0.83839 0.79038 1.19414 1.19980 1.19353 1.19429 0.78959 0.96773 1.48402 0.86222 1.42114 1.07692 1.05939 1.65976 1.19828 0.88161 0.85057 0.85090 1.90562 1.69163 1.30956 1.54625 1.21517 0.95359 0.81757 1.05332 1.47261 1.59894 1.15095 1.08820 1.20415 0.77625 0.84732 0.83718 1.90761 1.50177 1.72072 1.20285 1.21949 1.01872 0.94861 0.96385 0.85971 1.20120 1.02583 0.89725 0.98351 1.22418 1.00240 0.99047 0.95216 1.22419 1.01298 0.98476 0.95158 1.20252 0.98156 0.93522 0.98532 1.22205 1.03105 0.94089 0.95719 0.85337 1.20451 0.73395 0.88603 0.83500 1.90738 1.46503 1.77100 1.19933 0.91444 0.79451 0.87557 0.87203 0.89435 0.89259 0.87018 0.87078 0.89189 0.89726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.96 55.50 0.77 -24.90 16 2 C 0.04 1.22 5.50 -17.46 -0.10 1.12 16 3 Si 0.88 19.40 27.74 -169.99 -4.71 14.68 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 7 C -0.31 -8.81 10.16 -14.93 -0.15 -8.97 16 8 H 0.12 3.93 7.39 -52.49 -0.39 3.54 16 9 N -0.58 -14.09 5.09 -10.96 -0.06 -14.14 16 10 C 0.43 10.22 7.85 -10.98 -0.09 10.13 16 11 O -0.57 -15.72 16.01 5.55 0.09 -15.63 16 12 C 0.09 1.50 6.20 -5.19 -0.03 1.46 16 13 N -0.57 -9.32 2.15 -116.73 -0.25 -9.57 16 14 C 0.55 8.43 7.70 -10.96 -0.08 8.35 16 15 O -0.46 -8.62 17.81 5.60 0.10 -8.52 16 16 C -0.13 -1.38 2.51 -91.78 -0.23 -1.61 16 17 H 0.12 1.02 8.00 -51.93 -0.42 0.61 16 18 C -0.07 -0.64 5.83 -28.68 -0.17 -0.80 16 19 C -0.15 -1.12 9.78 -35.35 -0.35 -1.47 16 20 C -0.16 -1.13 9.78 -35.35 -0.35 -1.47 16 21 C -0.07 -0.57 5.87 -28.32 -0.17 -0.74 16 22 C -0.13 -1.50 2.52 -91.38 -0.23 -1.73 16 23 H 0.13 1.57 8.01 -51.93 -0.42 1.16 16 24 C 0.55 8.54 7.70 -10.91 -0.08 8.45 16 25 O -0.47 -8.44 17.65 5.60 0.10 -8.34 16 26 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.37 7.85 5.76 -40.82 -0.24 7.62 16 28 H 0.11 1.61 8.06 -51.93 -0.42 1.19 16 29 H 0.11 1.67 7.88 -51.93 -0.41 1.26 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.11 0.66 8.06 -52.49 -0.42 0.24 16 33 H 0.11 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 304.63 15.07 4.59 4.59 Total: -1.00 -35.60 304.63 -5.38 -40.97 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -3.99 Total: 8.13 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: -2.02 Total: 12.73 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.47 Total: -48.62 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: 0.29 Total: -32.50 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.60 -5.38 -40.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339603754.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.633 kcal (2) G-P(sol) polarization free energy of solvation -35.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds