Wall clock time and date at job start Mon Mar 30 2020 23:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 119.99895 * 2 1 4 4 H 1.48505 * 109.47149 * 269.99777 * 3 2 1 5 5 H 1.48501 * 109.47501 * 30.00121 * 3 2 1 6 6 H 1.48501 * 109.46930 * 150.00141 * 3 2 1 7 7 C 1.38956 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99687 * 0.02562 * 7 2 1 9 9 N 1.37091 * 120.00028 * 180.02562 * 7 2 1 10 10 C 1.34775 * 119.99763 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00656 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99773 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47289 * 179.97438 * 12 10 9 14 14 C 1.35836 * 123.25060 * 269.70951 * 13 12 10 15 15 O 1.21232 * 126.88302 * 12.39175 * 14 13 12 16 16 C 1.49756 * 106.29486 * 192.31122 * 14 13 12 17 17 H 1.08997 * 110.77189 * 86.73216 * 16 14 13 18 18 C 1.50681 * 119.04243 * 214.82595 * 16 14 13 19 19 C 1.51434 * 107.49314 * 165.44088 * 18 16 14 20 20 C 1.29879 * 124.36933 * 342.35082 * 19 18 16 21 21 C 1.51439 * 124.35069 * 358.80252 * 20 19 18 22 22 C 1.51414 * 106.89404 * 341.76783 * 21 20 19 23 23 H 1.09001 * 110.32256 * 294.24717 * 22 21 20 24 24 C 1.35840 * 123.25156 * 89.99616 * 13 12 10 25 25 O 1.21235 * 126.88234 * 12.41523 * 24 13 12 26 26 H 0.96997 * 120.00211 * 0.02562 * 1 2 3 27 27 H 0.96998 * 120.00071 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.47438 * 59.99564 * 12 10 9 29 29 H 1.09004 * 109.47113 * 299.99819 * 12 10 9 30 30 H 1.09003 * 109.22001 * 46.17209 * 18 16 14 31 31 H 1.08996 * 110.21120 * 285.27795 * 18 16 14 32 32 H 1.08001 * 117.81544 * 162.32415 * 19 18 16 33 33 H 1.07990 * 117.82118 * 178.77469 * 20 19 18 34 34 H 1.09004 * 109.96007 * 222.42647 * 21 20 19 35 35 H 1.08997 * 109.96593 * 101.11799 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4401 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0011 13 7 6.0491 -3.7518 0.0017 14 6 6.3028 -4.4516 1.1380 15 8 5.9810 -4.1479 2.2666 16 6 7.0581 -5.6748 0.7183 17 1 8.1276 -5.4705 0.6683 18 6 6.8293 -6.9661 1.4603 19 6 7.4177 -8.0825 0.6232 20 6 7.7052 -7.9790 -0.6391 21 6 7.4710 -6.7345 -1.4696 22 6 6.4741 -5.8820 -0.7133 23 1 5.5082 -6.3845 -0.6621 24 6 6.2973 -4.4546 -1.1340 25 8 6.3628 -4.0151 -2.2620 26 1 -0.4850 0.8400 -0.0004 27 1 3.8648 -0.3633 0.0007 28 1 5.9241 -1.8567 0.8910 29 1 5.9240 -1.8567 -0.8890 30 1 5.7581 -7.1217 1.5880 31 1 7.3189 -6.9330 2.4336 32 1 7.6117 -9.0277 1.1084 33 1 8.1405 -8.8374 -1.1289 34 1 7.0639 -7.0079 -2.4431 35 1 8.4066 -6.1897 -1.5958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339603754.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:15 Heat of formation + Delta-G solvation = -96.110743 kcal Electronic energy + Delta-G solvation = -21671.964647 eV Core-core repulsion = 18248.919626 eV Total energy + Delta-G solvation = -3423.045022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.29757 -40.35678 -39.72239 -38.72920 -36.82971 -36.08874 -33.92732 -32.96660 -31.90523 -29.58961 -26.71039 -26.25998 -24.42258 -22.86433 -21.69508 -20.86889 -20.14284 -19.53069 -18.27503 -18.18837 -18.02807 -17.02134 -16.70731 -16.25446 -16.07439 -15.92497 -15.70597 -15.23317 -15.04070 -14.66325 -14.47881 -14.27744 -14.07568 -13.92597 -13.49521 -13.33739 -12.95963 -12.50734 -12.44361 -12.12720 -12.09055 -12.04804 -11.62719 -11.47002 -11.16923 -10.95703 -10.39918 -10.37111 -9.89611 -8.49755 -6.12692 0.42066 1.17679 1.26827 1.30637 1.41310 1.43328 1.56450 1.73696 2.17376 2.68105 2.79008 3.05180 3.18184 3.23663 3.81588 3.92863 3.98248 4.01191 4.12496 4.14810 4.17256 4.32674 4.39559 4.42425 4.83825 4.90131 4.91087 5.08511 5.18601 5.43033 5.61340 5.73934 5.81269 6.02903 6.17684 6.42894 6.63386 6.73825 7.22415 7.74626 8.67366 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034043 B = 0.004369 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.287269 B = 6407.625980 C = 6580.450843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.964 3.036 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.231 1.231 7 C -0.335 4.335 8 H 0.055 0.945 9 N -0.577 5.577 10 C 0.429 3.571 11 O -0.619 6.619 12 C 0.091 3.909 13 N -0.577 5.577 14 C 0.541 3.459 15 O -0.502 6.502 16 C -0.115 4.115 17 H 0.157 0.843 18 C -0.072 4.072 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.064 4.064 22 C -0.124 4.124 23 H 0.118 0.882 24 C 0.546 3.454 25 O -0.500 6.500 26 H 0.282 0.718 27 H 0.393 0.607 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.092 0.908 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.612 -10.693 -0.094 25.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.209 4.209 3 Si 0.783 3.217 4 H -0.178 1.178 5 H -0.195 1.195 6 H -0.154 1.154 7 C -0.464 4.464 8 H 0.073 0.927 9 N -0.218 5.218 10 C 0.216 3.784 11 O -0.505 6.505 12 C -0.034 4.034 13 N -0.321 5.321 14 C 0.332 3.668 15 O -0.374 6.374 16 C -0.136 4.136 17 H 0.174 0.826 18 C -0.109 4.109 19 C -0.171 4.171 20 C -0.169 4.169 21 C -0.101 4.101 22 C -0.145 4.145 23 H 0.135 0.865 24 C 0.337 3.663 25 O -0.372 6.372 26 H 0.092 0.908 27 H 0.229 0.771 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.087 0.913 31 H 0.121 0.879 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.111 0.889 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 21.859 -10.857 -0.089 24.407 hybrid contribution -0.884 1.296 0.047 1.569 sum 20.975 -9.561 -0.042 23.052 Atomic orbital electron populations 1.69791 1.08160 1.29600 1.49110 1.26154 0.96522 1.02804 0.95452 0.85378 0.79587 0.76477 0.80222 1.17797 1.19525 1.15375 1.18993 0.81109 0.95142 1.51202 0.92730 1.41919 1.06106 1.07317 1.66427 1.21060 0.90914 0.83964 0.82442 1.90534 1.71159 1.32767 1.56062 1.21535 0.90169 0.83562 1.08138 1.47560 1.59736 1.14993 1.09800 1.21273 0.76989 0.85699 0.82872 1.90736 1.51803 1.73201 1.21645 1.22036 1.02735 0.93389 0.95408 0.82610 1.20178 1.01921 0.89411 0.99385 1.22446 1.00311 0.99083 0.95222 1.22515 1.01071 0.98404 0.94898 1.20330 0.97722 0.93629 0.98460 1.22244 1.03722 0.91830 0.96718 0.86458 1.21133 0.72285 0.90026 0.82816 1.90714 1.47738 1.77897 1.20815 0.90809 0.77112 0.84612 0.84304 0.91288 0.87921 0.84974 0.84773 0.88927 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.30 13.96 21.67 0.30 -56.00 16 2 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 3 Si 0.96 39.03 27.74 68.60 1.90 40.93 16 4 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 6 H -0.23 -7.87 6.52 99.48 0.65 -7.22 16 7 C -0.34 -20.17 10.16 84.04 0.85 -19.32 16 8 H 0.05 3.91 7.39 -2.91 -0.02 3.88 16 9 N -0.58 -28.31 5.09 -306.99 -1.56 -29.87 16 10 C 0.43 20.58 7.85 87.66 0.69 21.27 16 11 O -0.62 -35.90 16.01 -3.05 -0.05 -35.94 16 12 C 0.09 3.07 6.20 85.63 0.53 3.60 16 13 N -0.58 -18.54 2.15 -758.83 -1.63 -20.17 16 14 C 0.54 16.30 7.70 87.19 0.67 16.98 16 15 O -0.50 -18.67 17.81 -2.88 -0.05 -18.72 16 16 C -0.12 -2.24 2.51 -11.55 -0.03 -2.27 16 17 H 0.16 2.04 8.00 -2.39 -0.02 2.02 16 18 C -0.07 -1.16 5.83 29.33 0.17 -0.99 16 19 C -0.15 -1.77 9.78 27.04 0.26 -1.51 16 20 C -0.15 -1.65 9.78 27.04 0.26 -1.38 16 21 C -0.06 -0.91 5.87 29.56 0.17 -0.74 16 22 C -0.12 -2.70 2.52 -11.28 -0.03 -2.73 16 23 H 0.12 2.87 8.01 -2.39 -0.02 2.85 16 24 C 0.55 16.47 7.70 87.22 0.67 17.14 16 25 O -0.50 -17.49 17.65 -2.89 -0.05 -17.54 16 26 H 0.28 15.57 8.31 -92.71 -0.77 14.79 16 27 H 0.39 15.78 5.76 -92.71 -0.53 15.24 16 28 H 0.14 3.78 8.06 -2.39 -0.02 3.76 16 29 H 0.14 3.88 7.88 -2.38 -0.02 3.86 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.13 1.06 8.06 -2.91 -0.02 1.03 16 33 H 0.13 0.94 8.06 -2.92 -0.02 0.92 16 34 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -84.18 304.63 4.09 -80.09 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.54 Total: 27.24 kcal Atomic # 6 Polarization: 25.29 SS G_CDS: 4.70 Total: 29.99 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -2.89 Total: -106.05 kcal Atomic # 8 Polarization: -72.06 SS G_CDS: -0.15 Total: -72.21 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 1.90 Total: 40.93 kcal Total: -84.18 4.09 -80.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339603754.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.021 kcal (2) G-P(sol) polarization free energy of solvation -84.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds