Wall clock time and date at job start Mon Mar 30 2020 23:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00170 * 2 1 4 4 H 1.48502 * 109.47378 * 270.00266 * 3 2 1 5 5 H 1.48496 * 109.47495 * 30.00078 * 3 2 1 6 6 H 1.48503 * 109.47246 * 150.00585 * 3 2 1 7 7 C 1.37877 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00242 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00286 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47339 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.47336 * 179.97438 * 10 9 7 12 12 O 1.42099 * 109.46875 * 296.39099 * 11 10 9 13 13 C 1.81398 * 103.00020 * 179.97438 * 11 10 9 14 14 C 1.50706 * 109.46789 * 179.97438 * 13 11 10 15 15 C 1.38253 * 120.00298 * 269.97683 * 14 13 11 16 16 C 1.38205 * 119.99885 * 179.97438 * 15 14 13 17 17 C 1.38261 * 120.00495 * 0.02562 * 16 15 14 18 18 C 1.38208 * 119.99533 * 359.97438 * 17 16 15 19 19 C 1.38220 * 119.99654 * 90.00482 * 14 13 11 20 20 C 1.50702 * 120.00039 * 0.27115 * 19 14 13 21 21 C 1.52992 * 117.50034 * 188.34536 * 20 19 14 22 22 C 1.52998 * 60.00165 * 252.51562 * 21 20 19 23 23 H 0.97001 * 119.99773 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47205 * 59.99230 * 9 7 2 25 25 H 1.08998 * 109.46764 * 299.99925 * 9 7 2 26 26 H 1.09006 * 109.47168 * 59.99737 * 10 9 7 27 27 H 1.09006 * 109.47411 * 299.99694 * 10 9 7 28 28 H 1.08997 * 109.46937 * 60.00060 * 13 11 10 29 29 H 1.08996 * 109.47271 * 299.99678 * 13 11 10 30 30 H 1.08005 * 119.99906 * 0.06844 * 15 14 13 31 31 H 1.08013 * 119.99987 * 180.02562 * 16 15 14 32 32 H 1.07992 * 120.00025 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.00313 * 179.97438 * 18 17 16 34 34 H 1.08996 * 115.54942 * 334.06066 * 20 19 14 35 35 H 1.09004 * 117.49900 * 0.02562 * 21 20 19 36 36 H 1.09002 * 117.50236 * 145.01987 * 21 20 19 37 37 H 1.09001 * 117.49345 * 252.50858 * 22 21 20 38 38 H 1.09000 * 117.49503 * 107.49300 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8355 -2.6367 -0.0025 12 8 6.3082 -2.0416 -1.2032 13 6 6.2435 -4.4042 -0.0013 14 6 7.7410 -4.5740 -0.0030 15 6 8.4264 -4.6535 -1.2011 16 6 9.7997 -4.8087 -1.2026 17 6 10.4881 -4.8850 -0.0060 18 6 9.8030 -4.8056 1.1917 19 6 8.4291 -4.6509 1.1932 20 6 7.6812 -4.5710 2.4992 21 6 8.5086 -4.4651 3.7817 22 6 7.7823 -5.7690 3.4454 23 1 -0.4850 0.8401 -0.0004 24 1 3.8753 -0.6804 0.8888 25 1 3.8745 -0.6801 -0.8911 26 1 3.6578 -3.1507 -0.8907 27 1 3.6586 -3.1503 0.8893 28 1 5.8239 -4.8745 -0.8906 29 1 5.8254 -4.8730 0.8894 30 1 7.8887 -4.5928 -2.1359 31 1 10.3352 -4.8704 -2.1386 32 1 11.5612 -5.0067 -0.0072 33 1 10.3406 -4.8656 2.1264 34 1 6.7330 -4.0346 2.4658 35 1 9.5939 -4.4527 3.6810 36 1 8.1049 -3.8587 4.5925 37 1 6.9007 -6.0204 4.0350 38 1 8.3898 -6.6148 3.1235 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341511868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:43 Heat of formation + Delta-G solvation = 1.521557 kcal Electronic energy + Delta-G solvation = -18703.767155 eV Core-core repulsion = 15831.249002 eV Total energy + Delta-G solvation = -2872.518153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.93878 -36.84291 -35.24794 -33.71091 -32.95385 -31.25294 -30.60086 -27.23139 -25.54133 -24.12595 -22.64600 -21.70729 -20.75555 -20.16607 -17.35645 -17.01325 -16.76617 -16.03636 -15.17276 -15.03355 -14.83105 -14.29797 -14.14571 -14.08674 -13.95084 -13.09197 -12.95591 -12.76360 -12.60794 -12.36721 -11.85261 -11.70251 -11.56248 -11.20892 -11.04422 -11.03263 -10.81081 -10.67830 -10.48759 -10.23341 -9.98109 -9.65758 -9.33991 -8.79206 -8.59245 -8.46994 -7.73856 -6.09659 -4.09181 1.09808 1.27372 2.01693 3.04257 3.30319 3.37412 3.40520 3.48679 3.94975 4.13513 4.39206 4.41550 4.63875 4.69922 4.81349 4.86139 4.92121 5.07453 5.18444 5.23647 5.42126 5.46537 5.52483 5.60848 5.71551 5.82169 5.90672 5.91845 5.95474 5.97596 6.01065 6.40805 6.43811 6.56349 6.58684 6.90888 7.05196 7.17328 7.67626 8.46563 8.93219 9.51451 11.03323 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024449 B = 0.004137 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.971599 B = 6766.078917 C = 7276.001853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.073 0.927 9 C 0.004 3.996 10 C -0.411 4.411 11 S 1.214 4.786 12 O -0.844 6.844 13 C -0.416 4.416 14 C -0.049 4.049 15 C -0.109 4.109 16 C -0.121 4.121 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.048 4.048 20 C -0.124 4.124 21 C -0.175 4.175 22 C -0.169 4.169 23 H 0.264 0.736 24 H 0.028 0.972 25 H 0.018 0.982 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.378 -11.666 7.583 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.558 4.558 8 H 0.092 0.908 9 C -0.035 4.035 10 C -0.550 4.550 11 S 1.416 4.584 12 O -0.839 6.839 13 C -0.550 4.550 14 C -0.050 4.050 15 C -0.128 4.128 16 C -0.139 4.139 17 C -0.142 4.142 18 C -0.138 4.138 19 C -0.049 4.049 20 C -0.142 4.142 21 C -0.212 4.212 22 C -0.206 4.206 23 H 0.074 0.926 24 H 0.046 0.954 25 H 0.036 0.964 26 H 0.097 0.903 27 H 0.129 0.871 28 H 0.111 0.889 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 20.841 -10.791 7.553 24.655 hybrid contribution -0.659 -0.243 -2.013 2.132 sum 20.182 -11.033 5.540 23.659 Atomic orbital electron populations 1.69901 1.06271 1.27057 1.50704 1.25008 0.94773 0.99178 0.94356 0.86844 0.80487 0.83605 0.78886 1.20137 1.21037 1.18651 1.21028 0.88700 0.94624 1.51432 0.90847 1.19245 0.98177 0.88994 0.97096 1.27468 1.14687 1.06033 1.06813 1.70487 0.89857 0.85036 1.13068 1.93101 1.74781 1.65385 1.50682 1.26817 0.97239 1.22848 1.08080 1.18931 0.93105 1.00181 0.92765 1.21082 0.94602 0.99473 0.97625 1.21096 0.94128 1.00504 0.98172 1.21078 0.99685 1.00934 0.92459 1.20984 0.93536 1.01097 0.98153 1.18952 0.93122 1.00176 0.92638 1.21140 1.01120 1.03764 0.88187 1.23078 0.99118 1.00725 0.98269 1.23023 1.03218 0.92006 1.02377 0.92573 0.95426 0.96415 0.90328 0.87062 0.88865 0.85597 0.86197 0.86159 0.86160 0.85813 0.85972 0.88496 0.88006 0.88191 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.52 -14.81 9.66 -34.44 -0.33 -15.15 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C 0.00 0.09 4.05 -27.88 -0.11 -0.03 16 10 C -0.41 -7.73 5.86 37.15 0.22 -7.51 16 11 S 1.21 19.01 13.06 -107.50 -1.40 17.61 16 12 O -0.84 -18.29 18.14 -35.23 -0.64 -18.93 16 13 C -0.42 -5.28 5.38 36.01 0.19 -5.09 16 14 C -0.05 -0.63 5.14 -104.62 -0.54 -1.17 16 15 C -0.11 -1.46 9.70 -39.59 -0.38 -1.85 16 16 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 17 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 18 C -0.12 -1.21 9.30 -39.59 -0.37 -1.58 16 19 C -0.05 -0.53 5.61 -104.62 -0.59 -1.12 16 20 C -0.12 -1.12 5.15 -91.78 -0.47 -1.59 16 21 C -0.18 -1.26 9.86 -26.74 -0.26 -1.53 16 22 C -0.17 -1.27 10.16 -26.73 -0.27 -1.54 16 23 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 25 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 26 H 0.08 1.57 8.14 -51.92 -0.42 1.14 16 27 H 0.11 1.79 8.14 -51.92 -0.42 1.37 16 28 H 0.09 1.24 8.08 -51.93 -0.42 0.82 16 29 H 0.13 1.25 6.64 -51.93 -0.34 0.91 16 30 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 31 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.12 0.96 6.02 -52.49 -0.32 0.65 16 34 H 0.12 0.99 6.83 -51.93 -0.35 0.63 16 35 H 0.10 0.63 6.17 -51.93 -0.32 0.31 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 328.51 15.07 4.95 4.95 Total: -1.00 -36.01 328.51 -10.29 -46.30 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.49 Total: -0.45 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: -3.81 Total: -39.66 kcal Atomic # 7 Polarization: -27.74 SS G_CDS: 0.77 Total: -26.96 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.64 Total: -18.93 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: 19.01 SS G_CDS: -1.40 Total: 17.61 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.01 -10.29 -46.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341511868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.821 kcal (2) G-P(sol) polarization free energy of solvation -36.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds