Wall clock time and date at job start Mon Mar 30 2020 23:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00170 * 2 1 4 4 H 1.48502 * 109.47378 * 270.00266 * 3 2 1 5 5 H 1.48496 * 109.47495 * 30.00078 * 3 2 1 6 6 H 1.48503 * 109.47246 * 150.00585 * 3 2 1 7 7 C 1.37877 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00242 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00286 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47339 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.47336 * 179.97438 * 10 9 7 12 12 O 1.42099 * 109.46875 * 296.39099 * 11 10 9 13 13 C 1.81398 * 103.00020 * 179.97438 * 11 10 9 14 14 C 1.50706 * 109.46789 * 179.97438 * 13 11 10 15 15 C 1.38253 * 120.00298 * 269.97683 * 14 13 11 16 16 C 1.38205 * 119.99885 * 179.97438 * 15 14 13 17 17 C 1.38261 * 120.00495 * 0.02562 * 16 15 14 18 18 C 1.38208 * 119.99533 * 359.97438 * 17 16 15 19 19 C 1.38220 * 119.99654 * 90.00482 * 14 13 11 20 20 C 1.50702 * 120.00039 * 0.27115 * 19 14 13 21 21 C 1.52992 * 117.50034 * 188.34536 * 20 19 14 22 22 C 1.52998 * 60.00165 * 252.51562 * 21 20 19 23 23 H 0.97001 * 119.99773 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47205 * 59.99230 * 9 7 2 25 25 H 1.08998 * 109.46764 * 299.99925 * 9 7 2 26 26 H 1.09006 * 109.47168 * 59.99737 * 10 9 7 27 27 H 1.09006 * 109.47411 * 299.99694 * 10 9 7 28 28 H 1.08997 * 109.46937 * 60.00060 * 13 11 10 29 29 H 1.08996 * 109.47271 * 299.99678 * 13 11 10 30 30 H 1.08005 * 119.99906 * 0.06844 * 15 14 13 31 31 H 1.08013 * 119.99987 * 180.02562 * 16 15 14 32 32 H 1.07992 * 120.00025 * 179.97438 * 17 16 15 33 33 H 1.08000 * 120.00313 * 179.97438 * 18 17 16 34 34 H 1.08996 * 115.54942 * 334.06066 * 20 19 14 35 35 H 1.09004 * 117.49900 * 0.02562 * 21 20 19 36 36 H 1.09002 * 117.50236 * 145.01987 * 21 20 19 37 37 H 1.09001 * 117.49345 * 252.50858 * 22 21 20 38 38 H 1.09000 * 117.49503 * 107.49300 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8355 -2.6367 -0.0025 12 8 6.3082 -2.0416 -1.2032 13 6 6.2435 -4.4042 -0.0013 14 6 7.7410 -4.5740 -0.0030 15 6 8.4264 -4.6535 -1.2011 16 6 9.7997 -4.8087 -1.2026 17 6 10.4881 -4.8850 -0.0060 18 6 9.8030 -4.8056 1.1917 19 6 8.4291 -4.6509 1.1932 20 6 7.6812 -4.5710 2.4992 21 6 8.5086 -4.4651 3.7817 22 6 7.7823 -5.7690 3.4454 23 1 -0.4850 0.8401 -0.0004 24 1 3.8753 -0.6804 0.8888 25 1 3.8745 -0.6801 -0.8911 26 1 3.6578 -3.1507 -0.8907 27 1 3.6586 -3.1503 0.8893 28 1 5.8239 -4.8745 -0.8906 29 1 5.8254 -4.8730 0.8894 30 1 7.8887 -4.5928 -2.1359 31 1 10.3352 -4.8704 -2.1386 32 1 11.5612 -5.0067 -0.0072 33 1 10.3406 -4.8656 2.1264 34 1 6.7330 -4.0346 2.4658 35 1 9.5939 -4.4527 3.6810 36 1 8.1049 -3.8587 4.5925 37 1 6.9007 -6.0204 4.0350 38 1 8.3898 -6.6148 3.1235 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341511868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:43 Heat of formation + Delta-G solvation = -21.180563 kcal Electronic energy + Delta-G solvation = -18704.751593 eV Core-core repulsion = 15831.249002 eV Total energy + Delta-G solvation = -2873.502591 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73404 -37.49963 -36.78809 -35.73118 -33.87097 -33.27455 -31.40274 -28.31421 -27.39825 -24.86871 -23.29603 -22.92814 -22.17410 -20.94064 -19.22814 -18.37836 -17.76898 -16.89221 -16.59196 -16.14034 -15.98128 -15.84595 -15.47150 -15.29476 -14.81169 -14.70452 -14.25884 -14.06895 -13.66429 -13.54559 -13.12867 -13.08639 -12.83468 -12.50277 -12.31074 -12.01489 -11.94097 -11.80200 -11.78909 -11.57269 -11.47227 -11.11332 -11.04247 -10.82064 -9.76986 -9.45398 -9.01493 -8.33869 -6.38952 0.10074 0.42077 0.85735 1.33794 1.35505 1.46945 1.74871 2.32653 2.71138 2.83623 3.01086 3.27994 3.63374 3.79096 3.86796 4.13097 4.16723 4.18670 4.24317 4.31065 4.35149 4.40885 4.60636 4.68572 4.71949 4.81189 4.97074 5.08520 5.14818 5.20965 5.28040 5.29048 5.29634 5.43723 5.55598 5.58790 5.59747 5.71447 6.08480 6.22133 6.67613 7.25647 8.82431 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024449 B = 0.004137 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.971599 B = 6766.078917 C = 7276.001853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.936 3.064 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.234 1.234 7 C -0.531 4.531 8 H 0.037 0.963 9 C -0.001 4.001 10 C -0.419 4.419 11 S 1.273 4.727 12 O -0.907 6.907 13 C -0.401 4.401 14 C -0.076 4.076 15 C -0.137 4.137 16 C -0.134 4.134 17 C -0.118 4.118 18 C -0.123 4.123 19 C -0.045 4.045 20 C -0.149 4.149 21 C -0.165 4.165 22 C -0.164 4.164 23 H 0.268 0.732 24 H 0.053 0.947 25 H -0.001 1.001 26 H 0.057 0.943 27 H 0.139 0.861 28 H 0.084 0.916 29 H 0.160 0.840 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.222 -11.950 9.913 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.759 3.241 4 H -0.205 1.205 5 H -0.198 1.198 6 H -0.157 1.157 7 C -0.570 4.570 8 H 0.056 0.944 9 C -0.039 4.039 10 C -0.556 4.556 11 S 1.476 4.524 12 O -0.903 6.903 13 C -0.538 4.538 14 C -0.077 4.077 15 C -0.156 4.156 16 C -0.152 4.152 17 C -0.137 4.137 18 C -0.141 4.141 19 C -0.046 4.046 20 C -0.167 4.167 21 C -0.202 4.202 22 C -0.201 4.201 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.017 0.983 26 H 0.076 0.924 27 H 0.158 0.842 28 H 0.103 0.897 29 H 0.178 0.822 30 H 0.120 0.880 31 H 0.152 0.848 32 H 0.168 0.832 33 H 0.169 0.831 34 H 0.147 0.853 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 23.664 -11.055 9.888 27.928 hybrid contribution -1.464 -0.369 -2.721 3.112 sum 22.200 -11.425 7.167 25.975 Atomic orbital electron populations 1.70042 1.08142 1.28306 1.52243 1.25961 0.95637 1.03330 0.93984 0.85860 0.80419 0.78782 0.79022 1.20538 1.19778 1.15671 1.21394 0.91383 0.93378 1.50845 0.94419 1.19197 0.95115 0.92438 0.97153 1.27507 1.17914 1.02963 1.07263 1.69693 0.85806 0.86381 1.10501 1.92985 1.75209 1.69126 1.52969 1.26645 0.98032 1.19630 1.09451 1.19004 0.92832 1.02359 0.93522 1.21191 0.95848 1.01193 0.97377 1.21339 0.93483 1.00674 0.99725 1.21474 1.01199 0.99151 0.91856 1.21376 0.93328 1.00052 0.99329 1.19218 0.93809 0.98793 0.92803 1.21265 1.01915 1.05598 0.87879 1.23205 0.99501 1.00338 0.97130 1.23092 1.03716 0.91822 1.01485 0.92287 0.92921 0.98314 0.92395 0.84242 0.89674 0.82220 0.88041 0.84792 0.83249 0.83096 0.85292 0.87649 0.86807 0.87172 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 2 C 0.01 0.50 5.47 84.65 0.46 0.96 16 3 Si 0.94 44.68 27.47 68.60 1.88 46.56 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.23 -10.02 6.54 99.48 0.65 -9.37 16 7 C -0.53 -31.03 9.66 25.60 0.25 -30.79 16 8 H 0.04 2.39 7.99 -2.91 -0.02 2.36 16 9 C 0.00 -0.03 4.05 29.85 0.12 0.09 16 10 C -0.42 -15.68 5.86 71.98 0.42 -15.26 16 11 S 1.27 38.82 13.06 -56.49 -0.74 38.09 16 12 O -0.91 -39.77 18.14 -148.98 -2.70 -42.47 16 13 C -0.40 -9.71 5.38 71.24 0.38 -9.33 16 14 C -0.08 -1.88 5.14 -19.86 -0.10 -1.98 16 15 C -0.14 -3.69 9.70 22.27 0.22 -3.47 16 16 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 17 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 18 C -0.12 -2.09 9.30 22.27 0.21 -1.88 16 19 C -0.04 -0.88 5.61 -19.86 -0.11 -0.99 16 20 C -0.15 -2.18 5.15 -11.54 -0.06 -2.24 16 21 C -0.17 -1.73 9.86 30.59 0.30 -1.43 16 22 C -0.16 -1.88 10.16 30.59 0.31 -1.57 16 23 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 24 H 0.05 2.24 7.20 -2.38 -0.02 2.23 16 25 H 0.00 -0.08 7.57 -2.39 -0.02 -0.10 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.14 4.31 8.14 -2.39 -0.02 4.29 16 28 H 0.08 2.24 8.08 -2.39 -0.02 2.22 16 29 H 0.16 2.75 6.64 -2.39 -0.02 2.73 16 30 H 0.10 2.98 8.06 -2.91 -0.02 2.95 16 31 H 0.13 2.40 8.06 -2.90 -0.02 2.37 16 32 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.15 1.68 6.02 -2.91 -0.02 1.66 16 34 H 0.13 1.65 6.83 -2.39 -0.02 1.63 16 35 H 0.11 0.91 6.17 -2.38 -0.01 0.90 16 36 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -80.85 328.51 2.57 -78.28 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.98 Total: 11.45 kcal Atomic # 6 Polarization: -75.28 SS G_CDS: 2.85 Total: -72.44 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.30 Total: -59.46 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -2.70 Total: -42.47 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.56 kcal Atomic # 16 Polarization: 38.82 SS G_CDS: -0.74 Total: 38.09 kcal Total: -80.85 2.57 -78.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341511868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.095 kcal (2) G-P(sol) polarization free energy of solvation -80.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds