Wall clock time and date at job start Mon Mar 30 2020 23:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47046 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46873 * 299.99705 * 3 2 1 6 6 H 1.48497 * 109.47510 * 59.99740 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47145 * 179.97438 * 10 9 7 12 12 O 1.42097 * 109.47307 * 63.60458 * 11 10 9 13 13 C 1.81401 * 103.00097 * 179.97438 * 11 10 9 14 14 C 1.50699 * 109.46970 * 179.97438 * 13 11 10 15 15 C 1.38262 * 119.99731 * 269.71842 * 14 13 11 16 16 C 1.38213 * 119.99422 * 179.78981 * 15 14 13 17 17 C 1.38252 * 120.00489 * 0.46614 * 16 15 14 18 18 C 1.38219 * 119.99908 * 359.77285 * 17 16 15 19 19 C 1.38206 * 120.00162 * 90.00148 * 14 13 11 20 20 C 1.50707 * 119.99938 * 359.97335 * 19 14 13 21 21 C 1.52998 * 117.49846 * 188.62133 * 20 19 14 22 22 C 1.52999 * 60.00228 * 252.51500 * 21 20 19 23 23 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 25 25 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 26 26 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 27 27 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 28 28 H 1.09007 * 109.46813 * 299.99841 * 13 11 10 29 29 H 1.08998 * 109.47330 * 59.99409 * 13 11 10 30 30 H 1.07992 * 119.99872 * 0.02562 * 15 14 13 31 31 H 1.08006 * 119.99451 * 180.25889 * 16 15 14 32 32 H 1.08000 * 120.00145 * 179.78583 * 17 16 15 33 33 H 1.07998 * 119.99995 * 179.97438 * 18 17 16 34 34 H 1.08990 * 115.54952 * 334.33298 * 20 19 14 35 35 H 1.09005 * 117.50024 * 0.02562 * 21 20 19 36 36 H 1.08998 * 117.49652 * 145.01959 * 21 20 19 37 37 H 1.09001 * 117.49751 * 252.51113 * 22 21 20 38 38 H 1.08998 * 117.49721 * 107.49549 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2331 0.0013 12 8 0.5853 -5.3459 -1.1984 13 6 2.6650 -6.4702 0.0004 14 6 2.0633 -7.8519 0.0016 15 6 1.7939 -8.4876 1.1995 16 6 1.2381 -9.7530 1.2005 17 6 0.9603 -10.3871 0.0038 18 6 1.2342 -9.7536 -1.1938 19 6 1.7862 -8.4860 -1.1948 20 6 2.0851 -7.7954 -2.5005 21 6 1.5744 -8.4564 -3.7824 22 6 3.0682 -8.4797 -3.4526 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6044 -0.8895 27 1 2.8719 -3.6043 0.8905 28 1 3.2805 -6.3423 -0.8901 29 1 3.2818 -6.3422 0.8899 30 1 2.0143 -7.9937 2.1343 31 1 1.0238 -10.2478 2.1363 32 1 0.5292 -11.3773 0.0047 33 1 1.0176 -10.2491 -2.1286 34 1 2.0945 -6.7061 -2.4648 35 1 1.0217 -9.3905 -3.6813 36 1 1.2474 -7.8018 -4.5903 37 1 3.7241 -7.8404 -4.0436 38 1 3.4987 -9.4292 -3.1346 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341511870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:46 Heat of formation + Delta-G solvation = -1.678175 kcal Electronic energy + Delta-G solvation = -18739.460477 eV Core-core repulsion = 15866.803573 eV Total energy + Delta-G solvation = -2872.656904 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.84611 -36.72126 -35.09110 -33.67009 -32.86902 -30.87652 -30.52615 -27.11092 -25.25020 -24.02429 -22.54027 -21.72507 -20.95318 -20.07396 -17.14535 -16.86687 -16.43674 -15.93471 -15.13151 -14.84400 -14.68688 -14.51488 -14.11774 -13.96805 -13.74737 -13.08471 -12.76765 -12.61816 -12.32074 -12.22614 -11.68117 -11.58730 -11.28126 -11.11943 -10.99272 -10.92560 -10.72128 -10.67732 -10.34239 -10.14474 -10.12369 -9.55871 -9.24795 -8.70586 -8.42199 -8.35808 -7.59642 -6.04732 -4.08938 1.18711 1.34140 2.14428 3.20456 3.28191 3.35801 3.39455 3.59122 4.05375 4.28961 4.42831 4.51510 4.75930 4.79885 4.92433 4.97490 5.02259 5.19430 5.24539 5.30319 5.49724 5.55926 5.61460 5.68274 5.82132 5.95597 6.01075 6.05463 6.07925 6.11633 6.15605 6.47433 6.48609 6.67599 6.81404 6.97722 7.49991 7.61393 7.90599 8.32010 8.96094 9.55301 11.05885 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027997 B = 0.003819 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.854714 B = 7329.843537 C = 7828.350579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.418 4.418 11 S 1.220 4.780 12 O -0.839 6.839 13 C -0.421 4.421 14 C -0.049 4.049 15 C -0.115 4.115 16 C -0.123 4.123 17 C -0.124 4.124 18 C -0.120 4.120 19 C -0.042 4.042 20 C -0.118 4.118 21 C -0.172 4.172 22 C -0.174 4.174 23 H 0.262 0.738 24 H 0.023 0.977 25 H 0.028 0.972 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.350 -20.481 2.357 21.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.558 4.558 11 S 1.421 4.579 12 O -0.834 6.834 13 C -0.554 4.554 14 C -0.050 4.050 15 C -0.134 4.134 16 C -0.141 4.141 17 C -0.143 4.143 18 C -0.138 4.138 19 C -0.043 4.043 20 C -0.136 4.136 21 C -0.209 4.209 22 C -0.211 4.211 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.046 0.954 26 H 0.090 0.910 27 H 0.123 0.877 28 H 0.111 0.889 29 H 0.140 0.860 30 H 0.149 0.851 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.235 -20.533 2.326 20.916 hybrid contribution 1.840 1.259 -1.853 2.899 sum 5.075 -19.273 0.472 19.936 Atomic orbital electron populations 1.69973 1.06044 1.26742 1.50364 1.25045 0.94905 0.99333 0.95183 0.86498 0.80017 0.83582 0.77687 1.19751 1.20983 1.20799 1.21196 0.93041 0.90440 1.51126 0.92457 1.18787 0.92967 0.90148 0.98104 1.27640 1.09601 1.12624 1.05892 1.70568 0.87454 0.86725 1.13142 1.93105 1.55954 1.83774 1.50567 1.26881 1.14954 1.05754 1.07826 1.18979 0.99085 0.94131 0.92788 1.21063 0.99722 0.95241 0.97345 1.21095 0.99731 0.95330 0.97973 1.21068 1.00829 0.99895 0.92499 1.20989 0.99815 0.94740 0.98256 1.19015 0.98330 0.93943 0.92995 1.21136 1.04519 0.99528 0.88395 1.22999 0.96441 1.02690 0.98773 1.23020 0.92737 1.02412 1.02898 0.92837 0.95901 0.95356 0.91027 0.87738 0.88864 0.85988 0.85128 0.85937 0.86254 0.86164 0.86403 0.88517 0.88430 0.88644 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.04 0.99 4.98 -27.88 -0.14 0.85 16 10 C -0.42 -8.16 5.86 37.16 0.22 -7.94 16 11 S 1.22 19.77 13.13 -107.50 -1.41 18.36 16 12 O -0.84 -18.43 16.76 -35.23 -0.59 -19.02 16 13 C -0.42 -5.50 5.38 36.01 0.19 -5.31 16 14 C -0.05 -0.65 5.14 -104.62 -0.54 -1.19 16 15 C -0.11 -1.26 9.70 -39.58 -0.38 -1.64 16 16 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 17 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 18 C -0.12 -1.46 9.30 -39.58 -0.37 -1.83 16 19 C -0.04 -0.59 5.61 -104.62 -0.59 -1.18 16 20 C -0.12 -1.72 5.10 -91.77 -0.47 -2.19 16 21 C -0.17 -2.14 9.86 -26.73 -0.26 -2.40 16 22 C -0.17 -2.05 10.16 -26.73 -0.27 -2.32 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 27 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 28 H 0.09 1.30 6.65 -51.92 -0.35 0.96 16 29 H 0.12 1.21 8.08 -51.92 -0.42 0.79 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.12 1.27 6.02 -52.49 -0.32 0.95 16 34 H 0.12 2.04 5.54 -51.93 -0.29 1.75 16 35 H 0.10 1.05 6.18 -51.93 -0.32 0.73 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 329.48 15.07 4.97 4.97 Total: -1.00 -35.36 329.48 -10.59 -45.96 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.46 Total: 1.22 kcal Atomic # 6 Polarization: -38.09 SS G_CDS: -3.81 Total: -41.91 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.59 Total: -19.02 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 19.77 SS G_CDS: -1.41 Total: 18.36 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.36 -10.59 -45.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341511870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.280 kcal (2) G-P(sol) polarization free energy of solvation -35.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds