Wall clock time and date at job start Mon Mar 30 2020 23:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47046 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46873 * 299.99705 * 3 2 1 6 6 H 1.48497 * 109.47510 * 59.99740 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47145 * 179.97438 * 10 9 7 12 12 O 1.42097 * 109.47307 * 63.60458 * 11 10 9 13 13 C 1.81401 * 103.00097 * 179.97438 * 11 10 9 14 14 C 1.50699 * 109.46970 * 179.97438 * 13 11 10 15 15 C 1.38262 * 119.99731 * 269.71842 * 14 13 11 16 16 C 1.38213 * 119.99422 * 179.78981 * 15 14 13 17 17 C 1.38252 * 120.00489 * 0.46614 * 16 15 14 18 18 C 1.38219 * 119.99908 * 359.77285 * 17 16 15 19 19 C 1.38206 * 120.00162 * 90.00148 * 14 13 11 20 20 C 1.50707 * 119.99938 * 359.97335 * 19 14 13 21 21 C 1.52998 * 117.49846 * 188.62133 * 20 19 14 22 22 C 1.52999 * 60.00228 * 252.51500 * 21 20 19 23 23 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 25 25 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 26 26 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 27 27 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 28 28 H 1.09007 * 109.46813 * 299.99841 * 13 11 10 29 29 H 1.08998 * 109.47330 * 59.99409 * 13 11 10 30 30 H 1.07992 * 119.99872 * 0.02562 * 15 14 13 31 31 H 1.08006 * 119.99451 * 180.25889 * 16 15 14 32 32 H 1.08000 * 120.00145 * 179.78583 * 17 16 15 33 33 H 1.07998 * 119.99995 * 179.97438 * 18 17 16 34 34 H 1.08990 * 115.54952 * 334.33298 * 20 19 14 35 35 H 1.09005 * 117.50024 * 0.02562 * 21 20 19 36 36 H 1.08998 * 117.49652 * 145.01959 * 21 20 19 37 37 H 1.09001 * 117.49751 * 252.51113 * 22 21 20 38 38 H 1.08998 * 117.49721 * 107.49549 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3383 -5.2331 0.0013 12 8 0.5853 -5.3459 -1.1984 13 6 2.6650 -6.4702 0.0004 14 6 2.0633 -7.8519 0.0016 15 6 1.7939 -8.4876 1.1995 16 6 1.2381 -9.7530 1.2005 17 6 0.9603 -10.3871 0.0038 18 6 1.2342 -9.7536 -1.1938 19 6 1.7862 -8.4860 -1.1948 20 6 2.0851 -7.7954 -2.5005 21 6 1.5744 -8.4564 -3.7824 22 6 3.0682 -8.4797 -3.4526 23 1 -0.4849 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6044 -0.8895 27 1 2.8719 -3.6043 0.8905 28 1 3.2805 -6.3423 -0.8901 29 1 3.2818 -6.3422 0.8899 30 1 2.0143 -7.9937 2.1343 31 1 1.0238 -10.2478 2.1363 32 1 0.5292 -11.3773 0.0047 33 1 1.0176 -10.2491 -2.1286 34 1 2.0945 -6.7061 -2.4648 35 1 1.0217 -9.3905 -3.6813 36 1 1.2474 -7.8018 -4.5903 37 1 3.7241 -7.8404 -4.0436 38 1 3.4987 -9.4292 -3.1346 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341511870.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:45 Heat of formation + Delta-G solvation = -23.360824 kcal Electronic energy + Delta-G solvation = -18740.400707 eV Core-core repulsion = 15866.803573 eV Total energy + Delta-G solvation = -2873.597134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.74126 -37.66138 -36.67071 -35.74025 -33.80393 -32.87844 -31.37722 -28.17409 -27.22218 -24.94502 -23.54639 -23.25840 -22.21799 -21.02765 -18.78850 -18.29183 -17.81171 -16.89166 -16.59117 -16.27759 -15.98974 -15.72797 -15.50614 -15.17530 -14.90489 -14.43850 -14.13553 -13.89530 -13.62651 -13.41778 -13.15146 -12.97988 -12.75613 -12.58569 -12.53794 -12.01775 -11.99019 -11.92030 -11.84507 -11.65233 -11.49127 -11.32557 -10.94259 -10.61706 -9.66413 -9.45543 -8.92918 -8.22753 -6.36358 0.17409 0.49165 0.94211 1.38517 1.39424 1.52521 1.87278 2.38906 2.67723 2.91789 3.09294 3.14429 3.54329 3.78493 3.85155 3.95249 4.05200 4.17111 4.28188 4.32010 4.38406 4.48220 4.58232 4.69589 4.74319 4.75534 4.86034 5.00855 5.07406 5.08525 5.17007 5.23507 5.40842 5.49852 5.62073 5.66454 5.75555 5.76037 6.15847 6.16343 6.78730 7.33272 8.88454 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027997 B = 0.003819 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.854714 B = 7329.843537 C = 7828.350579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.037 3.963 10 C -0.420 4.420 11 S 1.268 4.732 12 O -0.904 6.904 13 C -0.402 4.402 14 C -0.079 4.079 15 C -0.113 4.113 16 C -0.125 4.125 17 C -0.122 4.122 18 C -0.135 4.135 19 C -0.065 4.065 20 C -0.144 4.144 21 C -0.173 4.173 22 C -0.155 4.155 23 H 0.265 0.735 24 H -0.026 1.026 25 H 0.024 0.976 26 H 0.056 0.944 27 H 0.139 0.861 28 H 0.081 0.919 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.932 -22.255 4.237 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.001 4.001 10 C -0.557 4.557 11 S 1.471 4.529 12 O -0.900 6.900 13 C -0.538 4.538 14 C -0.081 4.081 15 C -0.132 4.132 16 C -0.142 4.142 17 C -0.141 4.141 18 C -0.153 4.153 19 C -0.067 4.067 20 C -0.163 4.163 21 C -0.210 4.210 22 C -0.192 4.192 23 H 0.074 0.926 24 H -0.008 1.008 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.157 0.843 28 H 0.100 0.900 29 H 0.182 0.818 30 H 0.180 0.820 31 H 0.173 0.827 32 H 0.165 0.835 33 H 0.148 0.852 34 H 0.099 0.901 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.810 -22.263 4.204 23.161 hybrid contribution 1.351 1.619 -2.426 3.214 sum 6.161 -20.644 1.779 21.617 Atomic orbital electron populations 1.70111 1.07897 1.27958 1.51340 1.26050 0.95824 1.03566 0.94569 0.85345 0.79033 0.78439 0.77903 1.18427 1.20934 1.19531 1.21682 0.93641 0.91826 1.50930 0.91778 1.18638 0.93629 0.92378 0.95489 1.27573 1.08570 1.12804 1.06795 1.69710 0.87258 0.85089 1.10821 1.93000 1.59662 1.84569 1.52721 1.26663 1.13308 1.04438 1.09381 1.19131 1.01013 0.94178 0.93750 1.21486 0.98498 0.95636 0.97561 1.21546 0.98485 0.95003 0.99202 1.21480 0.99612 1.00911 0.92059 1.21197 1.00107 0.94355 0.99667 1.19205 0.99540 0.95059 0.92853 1.21069 1.07234 0.97871 0.90093 1.23092 0.97426 1.02988 0.97497 1.23072 0.92287 1.02604 1.01231 0.92571 1.00781 0.95815 0.92493 0.84314 0.90008 0.81823 0.81988 0.82671 0.83544 0.85221 0.90059 0.86813 0.89181 0.88303 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.04 1.98 4.98 29.85 0.15 2.13 16 10 C -0.42 -16.67 5.86 71.98 0.42 -16.25 16 11 S 1.27 41.80 13.13 -56.49 -0.74 41.05 16 12 O -0.90 -42.13 16.76 -148.98 -2.50 -44.62 16 13 C -0.40 -9.98 5.38 71.24 0.38 -9.59 16 14 C -0.08 -1.99 5.14 -19.87 -0.10 -2.09 16 15 C -0.11 -2.09 9.70 22.27 0.22 -1.88 16 16 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 17 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 18 C -0.14 -3.07 9.30 22.27 0.21 -2.86 16 19 C -0.07 -1.80 5.61 -19.87 -0.11 -1.91 16 20 C -0.14 -4.33 5.10 -11.54 -0.06 -4.39 16 21 C -0.17 -4.37 9.86 30.59 0.30 -4.06 16 22 C -0.16 -3.60 10.16 30.60 0.31 -3.29 16 23 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 24 H -0.03 -1.64 8.14 -2.39 -0.02 -1.66 16 25 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 27 H 0.14 4.44 8.14 -2.39 -0.02 4.42 16 28 H 0.08 2.28 6.65 -2.39 -0.02 2.26 16 29 H 0.16 2.64 8.08 -2.39 -0.02 2.62 16 30 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 31 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 32 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.13 2.53 6.02 -2.91 -0.02 2.51 16 34 H 0.08 3.02 5.54 -2.39 -0.01 3.01 16 35 H 0.11 2.40 6.18 -2.38 -0.01 2.38 16 36 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -81.17 329.48 2.97 -78.19 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 1.04 Total: 14.94 kcal Atomic # 6 Polarization: -81.49 SS G_CDS: 2.86 Total: -78.63 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.28 Total: -57.45 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -2.50 Total: -44.62 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 41.80 SS G_CDS: -0.74 Total: 41.05 kcal Total: -81.17 2.97 -78.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341511870.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.834 kcal (2) G-P(sol) polarization free energy of solvation -81.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds