Wall clock time and date at job start Mon Mar 30 2020 23:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86801 * 119.99808 * 2 1 4 4 H 1.48496 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47082 * 300.00066 * 3 2 1 6 6 H 1.48501 * 109.47324 * 60.00010 * 3 2 1 7 7 C 1.39942 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00414 * 197.85637 * 7 2 1 9 9 C 1.41400 * 119.99691 * 17.85587 * 7 2 1 10 10 C 1.40717 * 120.24130 * 204.38034 * 9 7 2 11 11 C 1.37622 * 119.74181 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24691 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.74668 * 179.97438 * 12 11 10 14 14 S 1.81398 * 109.47454 * 89.99694 * 13 12 11 15 15 O 1.42097 * 109.46818 * 63.60811 * 14 13 12 16 16 C 1.81400 * 103.00045 * 179.97438 * 14 13 12 17 17 C 1.54888 * 110.75257 * 184.99940 * 16 14 13 18 18 C 1.54269 * 104.19351 * 156.26021 * 17 16 14 19 19 C 1.53880 * 106.59751 * 336.38892 * 18 17 16 20 20 C 1.54263 * 106.59661 * 359.97438 * 19 18 17 21 21 C 1.38634 * 120.50458 * 0.25044 * 12 11 10 22 22 C 1.37615 * 120.24559 * 359.44641 * 21 12 11 23 23 H 0.96997 * 120.00434 * 359.97438 * 1 2 3 24 24 H 1.07996 * 120.13128 * 359.97438 * 10 9 7 25 25 H 1.07996 * 119.87253 * 179.97438 * 11 10 9 26 26 H 1.08999 * 109.46874 * 329.99512 * 13 12 11 27 27 H 1.09005 * 109.47094 * 209.99773 * 13 12 11 28 28 H 1.08998 * 110.81636 * 61.66622 * 16 14 13 29 29 H 1.08996 * 110.48861 * 37.58197 * 17 16 14 30 30 H 1.08996 * 110.48588 * 274.93356 * 17 16 14 31 31 H 1.08991 * 110.03694 * 95.67072 * 18 17 16 32 32 H 1.09002 * 110.03416 * 217.05990 * 18 17 16 33 33 H 1.08994 * 110.03209 * 119.28804 * 19 18 17 34 34 H 1.09003 * 110.03258 * 240.71748 * 19 18 17 35 35 H 1.09002 * 110.48398 * 142.29008 * 20 19 18 36 36 H 1.09000 * 110.49141 * 264.79779 * 20 19 18 37 37 H 1.08002 * 119.87658 * 179.70775 * 21 12 11 38 38 H 1.08001 * 120.12825 * 180.27407 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3465 0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2862 9 6 1.3522 -2.4068 -0.3766 10 6 1.8260 -3.6499 0.0821 11 6 1.1801 -4.8065 -0.2907 12 6 0.0670 -4.7501 -1.1152 13 6 -0.6313 -6.0237 -1.5169 14 16 -1.9229 -6.4136 -0.3043 15 8 -2.9094 -5.3909 -0.3178 16 6 -2.6376 -7.9509 -0.9494 17 6 -3.8603 -8.3851 -0.1035 18 6 -4.6885 -9.2671 -1.0605 19 6 -4.3039 -8.8462 -2.4898 20 6 -3.2560 -7.7226 -2.3513 21 6 -0.4052 -3.5314 -1.5776 22 6 0.2212 -2.3617 -1.2126 23 1 -0.4850 0.8400 0.0004 24 1 2.6937 -3.6962 0.7234 25 1 1.5422 -5.7617 0.0597 26 1 0.0916 -6.8387 -1.5525 27 1 -1.0832 -5.8956 -2.5006 28 1 -1.8892 -8.7426 -0.9812 29 1 -4.4371 -7.5144 0.2082 30 1 -3.5387 -8.9612 0.7641 31 1 -4.4466 -10.3181 -0.9031 32 1 -5.7529 -9.1003 -0.8951 33 1 -3.8755 -9.6929 -3.0259 34 1 -5.1817 -8.4744 -3.0185 35 1 -2.4929 -7.8154 -3.1241 36 1 -3.7352 -6.7451 -2.4052 37 1 -1.2703 -3.4996 -2.2233 38 1 -0.1509 -1.4130 -1.5704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342113100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:40 Heat of formation + Delta-G solvation = -42.857516 kcal Electronic energy + Delta-G solvation = -18811.113351 eV Core-core repulsion = 15936.670777 eV Total energy + Delta-G solvation = -2874.442574 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -37.78814 -37.61417 -35.11792 -33.98566 -31.25177 -29.31022 -28.95655 -28.79334 -27.43714 -23.96215 -21.07242 -20.89825 -20.46904 -19.89643 -17.33451 -17.26853 -16.05986 -15.66001 -15.31850 -14.58260 -14.31913 -14.04453 -13.79760 -13.55117 -13.46921 -12.64533 -12.53535 -12.34282 -11.96269 -11.65185 -11.52574 -11.36080 -11.23212 -11.19642 -11.12233 -11.00394 -10.80607 -10.68773 -10.53601 -10.40527 -9.84804 -9.51561 -9.38831 -9.10174 -7.88788 -7.46455 -7.19055 -6.77673 -4.35918 1.84491 2.77717 3.03712 3.06359 3.08664 3.12228 3.29164 3.91553 4.25671 4.43985 4.57964 4.61767 4.79118 5.28773 5.31610 5.36397 5.55167 5.59836 5.65201 5.66322 5.73328 5.75191 5.83318 5.92840 6.02244 6.18434 6.22383 6.27458 6.34022 6.39936 6.94392 7.04813 7.24656 7.32775 7.58765 7.81213 8.03354 8.07237 8.26288 8.61815 8.86519 8.94668 10.16006 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043200 B = 0.003610 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.986552 B = 7755.237601 C = 7965.078805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.080 0.920 9 C 0.112 3.888 10 C -0.226 4.226 11 C -0.082 4.082 12 C -0.207 4.207 13 C -0.355 4.355 14 S 1.226 4.774 15 O -0.837 6.837 16 C -0.430 4.430 17 C -0.098 4.098 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.086 4.086 22 C -0.164 4.164 23 H 0.281 0.719 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 -14.800 -0.587 15.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.098 0.902 9 C 0.109 3.891 10 C -0.246 4.246 11 C -0.102 4.102 12 C -0.210 4.210 13 C -0.492 4.492 14 S 1.428 4.572 15 O -0.833 6.833 16 C -0.545 4.545 17 C -0.136 4.136 18 C -0.158 4.158 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.105 4.105 22 C -0.183 4.183 23 H 0.092 0.908 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.124 0.876 27 H 0.094 0.906 28 H 0.137 0.863 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.908 -14.188 0.243 14.718 hybrid contribution -0.570 1.024 -2.170 2.466 sum -4.477 -13.164 -1.927 14.037 Atomic orbital electron populations 1.69846 1.07645 1.29313 1.34350 1.25962 0.94716 1.01469 0.92293 0.86266 0.80984 0.80921 0.78597 1.18328 1.19714 1.19932 1.19664 0.98183 0.91260 1.39703 0.90213 1.17667 0.90946 0.92209 0.88246 1.20958 1.03883 0.92754 1.07003 1.20380 0.95167 0.96821 0.97803 1.18284 1.01516 0.91159 1.10054 1.26105 1.10122 1.02638 1.10382 1.70489 0.92562 0.86571 1.07626 1.93120 1.57595 1.51512 1.81030 1.28874 1.05241 1.18418 1.01927 1.22042 0.94522 0.99654 0.97429 1.22123 0.99614 0.99421 0.94669 1.22104 0.98596 0.98181 0.96998 1.22399 0.98169 0.99391 0.95509 1.20550 0.97874 0.92850 0.99252 1.21298 0.99371 0.96637 1.01026 0.90765 0.88663 0.88717 0.87620 0.90649 0.86297 0.91215 0.90676 0.91829 0.92060 0.91964 0.92230 0.91451 0.91482 0.89839 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.82 10.95 55.55 0.61 -20.21 16 2 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 18.68 29.60 -169.99 -5.03 13.65 16 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.14 9.05 -37.74 -0.34 -12.48 16 8 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 9 C 0.11 3.00 5.58 -106.82 -0.60 2.41 16 10 C -0.23 -5.39 9.80 -38.87 -0.38 -5.77 16 11 C -0.08 -1.73 9.67 -39.66 -0.38 -2.11 16 12 C -0.21 -4.46 5.16 -104.33 -0.54 -5.00 16 13 C -0.35 -5.85 5.81 36.01 0.21 -5.64 16 14 S 1.23 18.44 12.69 -107.50 -1.36 17.07 16 15 O -0.84 -18.26 17.64 -35.23 -0.62 -18.88 16 16 C -0.43 -4.99 3.43 -24.73 -0.08 -5.08 16 17 C -0.10 -1.09 6.29 -25.07 -0.16 -1.24 16 18 C -0.12 -1.20 6.80 -25.61 -0.17 -1.38 16 19 C -0.12 -1.30 6.80 -25.61 -0.17 -1.47 16 20 C -0.12 -1.49 5.85 -25.06 -0.15 -1.64 16 21 C -0.09 -2.13 9.67 -39.66 -0.38 -2.51 16 22 C -0.16 -4.41 8.70 -38.87 -0.34 -4.75 16 23 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 24 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 25 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 26 H 0.11 1.37 8.08 -51.92 -0.42 0.95 16 27 H 0.07 1.28 7.89 -51.92 -0.41 0.87 16 28 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.91 7.89 -51.93 -0.41 0.50 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 1.04 7.76 -51.93 -0.40 0.64 16 37 H 0.08 2.02 8.06 -52.49 -0.42 1.60 16 38 H 0.12 3.28 6.16 -52.49 -0.32 2.96 16 LS Contribution 325.09 15.07 4.90 4.90 Total: -1.00 -32.38 325.09 -10.83 -43.21 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.74 Total: 5.15 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: -3.58 Total: -44.88 kcal Atomic # 7 Polarization: -20.82 SS G_CDS: 0.61 Total: -20.21 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.62 Total: -18.88 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Atomic # 16 Polarization: 18.44 SS G_CDS: -1.36 Total: 17.07 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.38 -10.83 -43.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342113100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.350 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds