Wall clock time and date at job start Mon Mar 30 2020 23:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86801 * 119.99808 * 2 1 4 4 H 1.48496 * 109.47304 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47082 * 300.00066 * 3 2 1 6 6 H 1.48501 * 109.47324 * 60.00010 * 3 2 1 7 7 C 1.39942 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00414 * 197.85637 * 7 2 1 9 9 C 1.41400 * 119.99691 * 17.85587 * 7 2 1 10 10 C 1.40717 * 120.24130 * 204.38034 * 9 7 2 11 11 C 1.37622 * 119.74181 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24691 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.74668 * 179.97438 * 12 11 10 14 14 S 1.81398 * 109.47454 * 89.99694 * 13 12 11 15 15 O 1.42097 * 109.46818 * 63.60811 * 14 13 12 16 16 C 1.81400 * 103.00045 * 179.97438 * 14 13 12 17 17 C 1.54888 * 110.75257 * 184.99940 * 16 14 13 18 18 C 1.54269 * 104.19351 * 156.26021 * 17 16 14 19 19 C 1.53880 * 106.59751 * 336.38892 * 18 17 16 20 20 C 1.54263 * 106.59661 * 359.97438 * 19 18 17 21 21 C 1.38634 * 120.50458 * 0.25044 * 12 11 10 22 22 C 1.37615 * 120.24559 * 359.44641 * 21 12 11 23 23 H 0.96997 * 120.00434 * 359.97438 * 1 2 3 24 24 H 1.07996 * 120.13128 * 359.97438 * 10 9 7 25 25 H 1.07996 * 119.87253 * 179.97438 * 11 10 9 26 26 H 1.08999 * 109.46874 * 329.99512 * 13 12 11 27 27 H 1.09005 * 109.47094 * 209.99773 * 13 12 11 28 28 H 1.08998 * 110.81636 * 61.66622 * 16 14 13 29 29 H 1.08996 * 110.48861 * 37.58197 * 17 16 14 30 30 H 1.08996 * 110.48588 * 274.93356 * 17 16 14 31 31 H 1.08991 * 110.03694 * 95.67072 * 18 17 16 32 32 H 1.09002 * 110.03416 * 217.05990 * 18 17 16 33 33 H 1.08994 * 110.03209 * 119.28804 * 19 18 17 34 34 H 1.09003 * 110.03258 * 240.71748 * 19 18 17 35 35 H 1.09002 * 110.48398 * 142.29008 * 20 19 18 36 36 H 1.09000 * 110.49141 * 264.79779 * 20 19 18 37 37 H 1.08002 * 119.87658 * 179.70775 * 21 12 11 38 38 H 1.08001 * 120.12825 * 180.27407 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3465 0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2862 9 6 1.3522 -2.4068 -0.3766 10 6 1.8260 -3.6499 0.0821 11 6 1.1801 -4.8065 -0.2907 12 6 0.0670 -4.7501 -1.1152 13 6 -0.6313 -6.0237 -1.5169 14 16 -1.9229 -6.4136 -0.3043 15 8 -2.9094 -5.3909 -0.3178 16 6 -2.6376 -7.9509 -0.9494 17 6 -3.8603 -8.3851 -0.1035 18 6 -4.6885 -9.2671 -1.0605 19 6 -4.3039 -8.8462 -2.4898 20 6 -3.2560 -7.7226 -2.3513 21 6 -0.4052 -3.5314 -1.5776 22 6 0.2212 -2.3617 -1.2126 23 1 -0.4850 0.8400 0.0004 24 1 2.6937 -3.6962 0.7234 25 1 1.5422 -5.7617 0.0597 26 1 0.0916 -6.8387 -1.5525 27 1 -1.0832 -5.8956 -2.5006 28 1 -1.8892 -8.7426 -0.9812 29 1 -4.4371 -7.5144 0.2082 30 1 -3.5387 -8.9612 0.7641 31 1 -4.4466 -10.3181 -0.9031 32 1 -5.7529 -9.1003 -0.8951 33 1 -3.8755 -9.6929 -3.0259 34 1 -5.1817 -8.4744 -3.0185 35 1 -2.4929 -7.8154 -3.1241 36 1 -3.7352 -6.7451 -2.4052 37 1 -1.2703 -3.4996 -2.2233 38 1 -0.1509 -1.4130 -1.5704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342113100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:40 Heat of formation + Delta-G solvation = -62.450682 kcal Electronic energy + Delta-G solvation = -18811.962975 eV Core-core repulsion = 15936.670777 eV Total energy + Delta-G solvation = -2875.292197 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.46289 -38.68401 -36.62884 -35.83351 -33.00248 -31.19374 -29.97945 -29.68833 -29.07276 -25.72903 -22.91532 -22.16526 -21.66333 -21.12921 -19.23188 -18.49246 -17.23372 -17.15953 -16.60514 -16.12485 -15.69923 -15.66988 -15.42872 -14.87368 -14.42905 -14.31318 -14.00177 -13.82941 -13.60109 -13.34668 -12.97024 -12.86335 -12.69652 -12.40540 -12.25961 -12.16164 -12.09333 -12.03904 -11.75621 -11.58009 -11.32956 -11.29845 -11.14864 -10.82114 -9.42690 -9.29571 -8.87615 -8.64407 -6.33197 0.50397 1.10409 1.14033 1.36199 1.51750 1.53752 1.93455 2.18854 2.73121 3.02356 3.51226 3.68049 3.74627 3.95229 4.12222 4.29101 4.41286 4.44989 4.46206 4.49968 4.66971 4.72216 4.78823 4.83186 4.92394 5.02502 5.08838 5.14571 5.15104 5.17747 5.26423 5.35426 5.42818 5.43203 5.68792 5.94737 6.09909 6.18837 6.36677 6.69358 6.92198 7.03193 8.31590 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043200 B = 0.003610 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.986552 B = 7755.237601 C = 7965.078805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.029 3.971 3 Si 0.985 3.015 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.496 4.496 8 H 0.084 0.916 9 C 0.077 3.923 10 C -0.235 4.235 11 C -0.075 4.075 12 C -0.195 4.195 13 C -0.360 4.360 14 S 1.262 4.738 15 O -0.917 6.917 16 C -0.410 4.410 17 C -0.105 4.105 18 C -0.119 4.119 19 C -0.121 4.121 20 C -0.127 4.127 21 C -0.110 4.110 22 C -0.195 4.195 23 H 0.286 0.714 24 H 0.112 0.888 25 H 0.154 0.846 26 H 0.159 0.841 27 H 0.068 0.932 28 H 0.169 0.831 29 H 0.037 0.963 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.025 0.975 37 H 0.072 0.928 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.071 -18.694 -0.167 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.186 4.186 3 Si 0.806 3.194 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.526 4.526 8 H 0.102 0.898 9 C 0.074 3.926 10 C -0.255 4.255 11 C -0.094 4.094 12 C -0.197 4.197 13 C -0.497 4.497 14 S 1.467 4.533 15 O -0.913 6.913 16 C -0.528 4.528 17 C -0.144 4.144 18 C -0.157 4.157 19 C -0.159 4.159 20 C -0.166 4.166 21 C -0.129 4.129 22 C -0.215 4.215 23 H 0.096 0.904 24 H 0.130 0.870 25 H 0.172 0.828 26 H 0.177 0.823 27 H 0.087 0.913 28 H 0.187 0.813 29 H 0.056 0.944 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.090 0.910 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.578 -18.048 0.670 18.244 hybrid contribution -1.107 1.915 -2.367 3.240 sum -3.686 -16.133 -1.697 16.636 Atomic orbital electron populations 1.69938 1.09421 1.30407 1.36016 1.26896 0.95383 1.05046 0.91231 0.85118 0.79665 0.75914 0.78744 1.17414 1.19401 1.19018 1.19936 0.98571 0.92381 1.41693 0.89835 1.18031 0.91461 0.94007 0.89091 1.21318 1.04529 0.92722 1.06926 1.20931 0.93871 0.98401 0.96233 1.18778 1.01166 0.91893 1.07913 1.26210 1.11492 1.01734 1.10261 1.69434 0.91272 0.86297 1.06324 1.93023 1.60245 1.55325 1.82661 1.28737 1.06562 1.16470 1.01031 1.22164 0.94009 0.99250 0.98962 1.22159 0.99381 1.00639 0.93518 1.22144 0.97818 0.98009 0.97944 1.22469 0.99197 0.98214 0.96671 1.20730 0.97902 0.94161 1.00123 1.21205 1.00947 0.96385 1.02947 0.90388 0.86959 0.82820 0.82337 0.91347 0.81347 0.94364 0.87269 0.89023 0.92278 0.89634 0.92967 0.90154 0.95635 0.90955 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.84 10.95 21.83 0.24 -46.60 16 2 C 0.03 1.51 5.14 85.26 0.44 1.95 16 3 Si 0.99 39.64 29.60 68.60 2.03 41.67 16 4 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.50 -27.41 9.05 23.46 0.21 -27.20 16 8 H 0.08 4.34 7.91 -2.91 -0.02 4.32 16 9 C 0.08 4.27 5.58 -21.29 -0.12 4.15 16 10 C -0.24 -11.11 9.80 22.73 0.22 -10.89 16 11 C -0.08 -2.98 9.67 22.22 0.21 -2.76 16 12 C -0.19 -8.20 5.16 -19.67 -0.10 -8.30 16 13 C -0.36 -10.81 5.81 71.24 0.41 -10.40 16 14 S 1.26 35.56 12.69 -56.49 -0.72 34.84 16 15 O -0.92 -41.25 17.64 -148.98 -2.63 -43.88 16 16 C -0.41 -7.92 3.43 31.89 0.11 -7.81 16 17 C -0.11 -1.99 6.29 31.67 0.20 -1.79 16 18 C -0.12 -1.94 6.80 31.32 0.21 -1.73 16 19 C -0.12 -2.23 6.80 31.32 0.21 -2.02 16 20 C -0.13 -2.97 5.85 31.68 0.19 -2.79 16 21 C -0.11 -5.70 9.67 22.22 0.21 -5.48 16 22 C -0.20 -11.22 8.70 22.73 0.20 -11.02 16 23 H 0.29 14.63 8.30 -92.71 -0.77 13.86 16 24 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 25 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 26 H 0.16 3.10 8.08 -2.39 -0.02 3.08 16 27 H 0.07 2.20 7.89 -2.39 -0.02 2.18 16 28 H 0.17 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.04 0.97 7.89 -2.39 -0.02 0.95 16 30 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.02 0.80 7.76 -2.39 -0.02 0.78 16 37 H 0.07 3.77 8.06 -2.91 -0.02 3.75 16 38 H 0.09 5.52 6.16 -2.91 -0.02 5.50 16 Total: -1.00 -78.58 325.09 2.57 -76.01 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 1.03 Total: 24.04 kcal Atomic # 6 Polarization: -88.70 SS G_CDS: 2.61 Total: -86.08 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.24 Total: -46.60 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -2.63 Total: -43.88 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Atomic # 16 Polarization: 35.56 SS G_CDS: -0.72 Total: 34.84 kcal Total: -78.58 2.57 -76.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342113100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.564 kcal (2) G-P(sol) polarization free energy of solvation -78.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds