Wall clock time and date at job start Mon Mar 30 2020 23:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86797 * 120.00019 * 2 1 4 4 H 1.48500 * 109.47510 * 240.00115 * 3 2 1 5 5 H 1.48498 * 109.47394 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47162 * 120.00308 * 3 2 1 7 7 C 1.39946 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00122 * 197.84406 * 7 2 1 9 9 C 1.41400 * 119.99622 * 17.85245 * 7 2 1 10 10 C 1.40716 * 120.24900 * 24.37847 * 9 7 2 11 11 C 1.37611 * 119.74656 * 180.02562 * 10 9 7 12 12 C 1.38643 * 120.24752 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.74774 * 179.97438 * 12 11 10 14 14 S 1.81402 * 109.47077 * 89.99929 * 13 12 11 15 15 C 1.81397 * 103.00014 * 179.97438 * 14 13 12 16 16 H 1.08996 * 109.52147 * 55.12784 * 15 14 13 17 17 C 1.53180 * 109.52196 * 175.31527 * 15 14 13 18 18 C 1.53180 * 109.03618 * 176.88512 * 17 15 14 19 19 C 1.53087 * 109.16692 * 303.02233 * 18 17 15 20 20 O 1.42903 * 109.41455 * 57.60538 * 19 18 17 21 21 C 1.42901 * 114.10033 * 298.84335 * 20 19 18 22 22 C 1.38632 * 120.50110 * 0.25582 * 12 11 10 23 23 C 1.37617 * 120.24819 * 359.44504 * 22 12 11 24 24 H 0.96996 * 119.99644 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.12353 * 0.03901 * 10 9 7 26 26 H 1.07994 * 119.87750 * 179.97438 * 11 10 9 27 27 H 1.08997 * 109.47011 * 210.00107 * 13 12 11 28 28 H 1.09001 * 109.47253 * 330.00253 * 13 12 11 29 29 H 1.09002 * 109.54554 * 296.75659 * 17 15 14 30 30 H 1.09006 * 109.54221 * 57.02126 * 17 15 14 31 31 H 1.08998 * 109.52053 * 183.11471 * 18 17 15 32 32 H 1.09005 * 109.56907 * 62.96197 * 18 17 15 33 33 H 1.09003 * 109.48132 * 297.62640 * 19 18 17 34 34 H 1.08998 * 109.48953 * 177.59601 * 19 18 17 35 35 H 1.09000 * 109.48058 * 301.17672 * 21 20 19 36 36 H 1.08998 * 109.48576 * 181.13734 * 21 20 19 37 37 H 1.07998 * 119.87237 * 179.70141 * 22 12 11 38 38 H 1.08005 * 120.13144 * 180.28011 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2860 9 6 1.3520 -2.4068 -0.3765 10 6 0.2206 -2.3617 -1.2120 11 6 -0.4102 -3.5308 -1.5710 12 6 0.0648 -4.7499 -1.1123 13 6 -0.6350 -6.0233 -1.5120 14 16 0.0943 -6.6579 -3.0470 15 6 -0.8629 -8.1665 -3.3603 16 1 -1.9255 -7.9250 -3.3855 17 6 -0.4419 -8.7701 -4.7038 18 6 -1.1998 -10.0835 -4.9209 19 6 -0.9193 -11.0255 -3.7473 20 8 -1.3051 -10.3912 -2.5263 21 6 -0.5955 -9.1827 -2.2470 22 6 1.1751 -4.8059 -0.2841 23 6 1.8253 -3.6499 0.0828 24 1 -0.4849 0.8400 -0.0004 25 1 -0.1512 -1.4130 -1.5702 26 1 -1.2789 -3.4986 -2.2117 27 1 -0.5199 -6.7647 -0.7214 28 1 -1.6946 -5.8216 -1.6695 29 1 -0.6813 -8.0737 -5.5075 30 1 0.6306 -8.9650 -4.6958 31 1 -0.8655 -10.5478 -5.8487 32 1 -2.2695 -9.8824 -4.9791 33 1 0.1449 -11.2592 -3.7150 34 1 -1.4898 -11.9455 -3.8751 35 1 0.4730 -9.3923 -2.1951 36 1 -0.9328 -8.7749 -1.2941 37 1 1.5335 -5.7608 0.0712 38 1 2.6929 -3.6961 0.7245 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342436787.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:31 Heat of formation + Delta-G solvation = -51.418871 kcal Electronic energy + Delta-G solvation = -18443.962516 eV Core-core repulsion = 15569.148694 eV Total energy + Delta-G solvation = -2874.813822 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.31148 -37.65741 -34.04940 -33.79876 -31.52318 -31.10186 -29.35014 -27.58851 -25.26764 -23.97704 -23.66749 -21.05699 -20.60943 -19.95723 -17.36596 -16.80807 -16.28151 -15.72875 -15.37456 -14.94938 -14.47543 -14.32564 -14.10408 -13.93990 -13.82350 -12.96799 -12.78939 -12.52981 -12.24037 -12.00138 -11.79477 -11.65336 -11.36172 -11.27139 -11.10513 -10.80525 -10.78070 -10.65099 -10.31870 -9.90293 -9.72728 -9.47056 -9.39122 -9.15143 -7.53712 -7.35246 -7.30240 -6.84655 -4.41760 1.78816 2.69184 2.96977 3.02287 3.04117 3.06471 3.36009 3.78824 3.87154 4.54620 4.58039 4.61765 4.68972 4.75653 5.06476 5.23018 5.37608 5.50523 5.54146 5.58455 5.60744 5.63678 5.74053 5.76252 5.90435 6.04890 6.14440 6.29001 6.34148 6.89660 6.97881 6.99335 7.20410 7.28705 7.54274 7.77236 7.98046 8.03273 8.21670 8.56091 8.80870 8.89344 10.09028 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.052644 B = 0.003086 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.742629 B = 9070.718320 C = 9204.489202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.117 3.883 10 C -0.168 4.168 11 C -0.078 4.078 12 C -0.212 4.212 13 C -0.003 4.003 14 S -0.265 6.265 15 C -0.102 4.102 16 H 0.088 0.912 17 C -0.100 4.100 18 C -0.151 4.151 19 C 0.058 3.942 20 O -0.383 6.383 21 C 0.069 3.931 22 C -0.066 4.066 23 C -0.228 4.228 24 H 0.283 0.717 25 H 0.119 0.881 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 -13.711 -6.490 15.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.187 4.187 11 C -0.098 4.098 12 C -0.216 4.216 13 C -0.149 4.149 14 S -0.032 6.032 15 C -0.231 4.231 16 H 0.107 0.893 17 C -0.138 4.138 18 C -0.191 4.191 19 C -0.019 4.019 20 O -0.301 6.301 21 C -0.010 4.010 22 C -0.086 4.086 23 C -0.248 4.248 24 H 0.094 0.906 25 H 0.137 0.863 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.992 -13.244 -6.996 15.110 hybrid contribution -0.513 0.468 0.549 0.885 sum -2.505 -12.776 -6.446 14.527 Atomic orbital electron populations 1.69817 1.07665 1.29569 1.34115 1.25960 0.94758 1.01490 0.92133 0.86337 0.80172 0.79991 0.80100 1.18697 1.20253 1.18906 1.19642 0.98212 0.91301 1.39396 0.90252 1.17670 0.90887 0.92046 0.88010 1.21289 0.99396 0.96733 1.01307 1.20514 0.98267 0.92484 0.98547 1.18378 1.02396 0.91248 1.09584 1.22018 1.00194 0.98717 0.93993 1.87403 1.52264 1.26735 1.36825 1.23791 1.02951 0.97175 0.99173 0.89329 1.21380 1.00635 0.96412 0.95401 1.22211 1.01547 0.96237 0.99085 1.22591 0.99864 0.95359 0.84046 1.87942 1.63915 1.38221 1.40068 1.22998 0.96916 0.83760 0.97324 1.20355 0.94668 0.96577 0.97044 1.20948 1.03783 0.92811 1.07253 0.90626 0.86325 0.89344 0.91217 0.91145 0.90590 0.90984 0.90528 0.90962 0.93090 0.88945 0.91930 0.88762 0.89305 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.96 10.95 55.55 0.61 -19.35 16 2 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 3 Si 0.91 18.30 29.59 -169.99 -5.03 13.27 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -11.91 9.05 -37.74 -0.34 -12.25 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 9 C 0.12 3.09 5.58 -106.82 -0.60 2.50 16 10 C -0.17 -4.32 8.70 -38.88 -0.34 -4.66 16 11 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 12 C -0.21 -4.59 5.16 -104.33 -0.54 -5.13 16 13 C 0.00 -0.05 5.76 36.01 0.21 0.16 16 14 S -0.26 -4.41 21.14 -107.50 -2.27 -6.68 16 15 C -0.10 -1.32 2.85 -26.59 -0.08 -1.40 16 16 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 17 C -0.10 -1.09 5.32 -26.55 -0.14 -1.24 16 18 C -0.15 -1.34 6.14 -26.59 -0.16 -1.50 16 19 C 0.06 0.54 6.84 37.20 0.25 0.79 16 20 O -0.38 -4.73 10.77 -35.23 -0.38 -5.11 16 21 C 0.07 0.85 6.01 37.21 0.22 1.08 16 22 C -0.07 -1.47 9.67 -39.66 -0.38 -1.86 16 23 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 24 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 25 H 0.12 3.15 6.16 -52.48 -0.32 2.82 16 26 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 27 H 0.07 1.12 7.16 -51.93 -0.37 0.75 16 28 H 0.07 1.18 8.08 -51.92 -0.42 0.76 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 1.18 7.04 -51.93 -0.37 0.81 16 37 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16 LS Contribution 323.40 15.07 4.87 4.87 Total: -1.00 -27.04 323.40 -10.63 -37.66 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.68 Total: 5.20 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: -2.75 Total: -29.86 kcal Atomic # 7 Polarization: -19.96 SS G_CDS: 0.61 Total: -19.35 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.38 Total: -5.11 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Atomic # 16 Polarization: -4.41 SS G_CDS: -2.27 Total: -6.68 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.04 -10.63 -37.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342436787.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.755 kcal (2) G-P(sol) polarization free energy of solvation -27.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds