Wall clock time and date at job start Mon Mar 30 2020 23:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86797 * 120.00019 * 2 1 4 4 H 1.48500 * 109.47510 * 240.00115 * 3 2 1 5 5 H 1.48498 * 109.47394 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47162 * 120.00308 * 3 2 1 7 7 C 1.39946 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00122 * 197.84406 * 7 2 1 9 9 C 1.41400 * 119.99622 * 17.85245 * 7 2 1 10 10 C 1.40716 * 120.24900 * 24.37847 * 9 7 2 11 11 C 1.37611 * 119.74656 * 180.02562 * 10 9 7 12 12 C 1.38643 * 120.24752 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.74774 * 179.97438 * 12 11 10 14 14 S 1.81402 * 109.47077 * 89.99929 * 13 12 11 15 15 C 1.81397 * 103.00014 * 179.97438 * 14 13 12 16 16 H 1.08996 * 109.52147 * 55.12784 * 15 14 13 17 17 C 1.53180 * 109.52196 * 175.31527 * 15 14 13 18 18 C 1.53180 * 109.03618 * 176.88512 * 17 15 14 19 19 C 1.53087 * 109.16692 * 303.02233 * 18 17 15 20 20 O 1.42903 * 109.41455 * 57.60538 * 19 18 17 21 21 C 1.42901 * 114.10033 * 298.84335 * 20 19 18 22 22 C 1.38632 * 120.50110 * 0.25582 * 12 11 10 23 23 C 1.37617 * 120.24819 * 359.44504 * 22 12 11 24 24 H 0.96996 * 119.99644 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.12353 * 0.03901 * 10 9 7 26 26 H 1.07994 * 119.87750 * 179.97438 * 11 10 9 27 27 H 1.08997 * 109.47011 * 210.00107 * 13 12 11 28 28 H 1.09001 * 109.47253 * 330.00253 * 13 12 11 29 29 H 1.09002 * 109.54554 * 296.75659 * 17 15 14 30 30 H 1.09006 * 109.54221 * 57.02126 * 17 15 14 31 31 H 1.08998 * 109.52053 * 183.11471 * 18 17 15 32 32 H 1.09005 * 109.56907 * 62.96197 * 18 17 15 33 33 H 1.09003 * 109.48132 * 297.62640 * 19 18 17 34 34 H 1.08998 * 109.48953 * 177.59601 * 19 18 17 35 35 H 1.09000 * 109.48058 * 301.17672 * 21 20 19 36 36 H 1.08998 * 109.48576 * 181.13734 * 21 20 19 37 37 H 1.07998 * 119.87237 * 179.70141 * 22 12 11 38 38 H 1.08005 * 120.13144 * 180.28011 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2860 9 6 1.3520 -2.4068 -0.3765 10 6 0.2206 -2.3617 -1.2120 11 6 -0.4102 -3.5308 -1.5710 12 6 0.0648 -4.7499 -1.1123 13 6 -0.6350 -6.0233 -1.5120 14 16 0.0943 -6.6579 -3.0470 15 6 -0.8629 -8.1665 -3.3603 16 1 -1.9255 -7.9250 -3.3855 17 6 -0.4419 -8.7701 -4.7038 18 6 -1.1998 -10.0835 -4.9209 19 6 -0.9193 -11.0255 -3.7473 20 8 -1.3051 -10.3912 -2.5263 21 6 -0.5955 -9.1827 -2.2470 22 6 1.1751 -4.8059 -0.2841 23 6 1.8253 -3.6499 0.0828 24 1 -0.4849 0.8400 -0.0004 25 1 -0.1512 -1.4130 -1.5702 26 1 -1.2789 -3.4986 -2.2117 27 1 -0.5199 -6.7647 -0.7214 28 1 -1.6946 -5.8216 -1.6695 29 1 -0.6813 -8.0737 -5.5075 30 1 0.6306 -8.9650 -4.6958 31 1 -0.8655 -10.5478 -5.8487 32 1 -2.2695 -9.8824 -4.9791 33 1 0.1449 -11.2592 -3.7150 34 1 -1.4898 -11.9455 -3.8751 35 1 0.4730 -9.3923 -2.1951 36 1 -0.9328 -8.7749 -1.2941 37 1 1.5335 -5.7608 0.0712 38 1 2.6929 -3.6961 0.7245 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342436787.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:31 Heat of formation + Delta-G solvation = -63.743914 kcal Electronic energy + Delta-G solvation = -18444.496970 eV Core-core repulsion = 15569.148694 eV Total energy + Delta-G solvation = -2875.348276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18256 -39.49287 -35.86627 -34.68936 -33.07715 -32.17505 -31.21285 -29.31290 -26.27302 -25.56072 -24.59484 -22.92668 -21.99280 -21.24405 -19.25073 -17.87806 -17.22057 -17.12163 -16.76769 -16.08481 -15.86993 -15.65511 -15.59745 -15.48721 -14.93739 -14.38885 -13.93672 -13.87791 -13.75855 -13.58376 -13.41012 -12.94257 -12.79834 -12.64682 -12.41043 -12.18848 -12.16042 -11.71588 -11.64523 -11.50024 -11.29995 -11.01957 -10.85326 -10.46802 -9.39918 -9.20419 -8.67946 -8.64145 -6.35516 0.39516 1.10441 1.16860 1.37728 1.48667 1.52233 1.79690 2.19399 2.74142 2.95714 3.63206 3.65066 3.73173 3.92255 4.01729 4.10242 4.13517 4.19981 4.41300 4.49852 4.56674 4.58666 4.62904 4.73223 4.75117 4.85524 4.98802 5.02198 5.07259 5.12692 5.25381 5.32562 5.41750 5.67042 5.91206 6.07099 6.14594 6.16660 6.34423 6.66193 6.90347 6.99418 8.29194 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.052644 B = 0.003086 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.742629 B = 9070.718320 C = 9204.489202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.497 4.497 8 H 0.077 0.923 9 C 0.084 3.916 10 C -0.191 4.191 11 C -0.086 4.086 12 C -0.202 4.202 13 C 0.000 4.000 14 S -0.291 6.291 15 C -0.086 4.086 16 H 0.088 0.912 17 C -0.101 4.101 18 C -0.143 4.143 19 C 0.050 3.950 20 O -0.397 6.397 21 C 0.072 3.928 22 C -0.070 4.070 23 C -0.244 4.244 24 H 0.290 0.710 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 -15.631 -7.356 17.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.526 4.526 8 H 0.095 0.905 9 C 0.082 3.918 10 C -0.211 4.211 11 C -0.105 4.105 12 C -0.205 4.205 13 C -0.147 4.147 14 S -0.059 6.059 15 C -0.215 4.215 16 H 0.106 0.894 17 C -0.139 4.139 18 C -0.183 4.183 19 C -0.026 4.026 20 O -0.317 6.317 21 C -0.007 4.007 22 C -0.090 4.090 23 C -0.264 4.264 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.135 0.865 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.258 -15.162 -7.847 17.221 hybrid contribution -0.518 0.772 0.716 1.174 sum -2.777 -14.390 -7.131 16.298 Atomic orbital electron populations 1.69868 1.09053 1.30790 1.34921 1.26795 0.95512 1.04613 0.91122 0.85241 0.78815 0.75505 0.80110 1.18560 1.19063 1.18211 1.19875 0.98466 0.92569 1.41719 0.90461 1.18007 0.91731 0.93159 0.88952 1.21255 1.00335 0.97004 1.02510 1.20741 0.98615 0.92508 0.98681 1.18750 1.01518 0.92426 1.07758 1.21929 1.00220 0.97278 0.95272 1.87421 1.53190 1.29547 1.35771 1.23833 1.01979 0.94974 1.00689 0.89366 1.21427 1.00974 0.97500 0.94016 1.22187 1.01215 0.94817 1.00049 1.22861 1.00848 0.95971 0.82957 1.87933 1.64163 1.37917 1.41639 1.22906 0.97031 0.83888 0.96877 1.20670 0.94532 0.97072 0.96700 1.21163 1.04430 0.93088 1.07685 0.89973 0.88074 0.87843 0.89251 0.90164 0.90711 0.91046 0.88082 0.90956 0.92319 0.86838 0.91810 0.89025 0.86455 0.88247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.09 10.95 21.83 0.24 -42.85 16 2 C 0.04 1.78 5.14 85.26 0.44 2.22 16 3 Si 0.98 38.21 29.59 68.60 2.03 40.24 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.50 -27.06 9.05 23.46 0.21 -26.85 16 8 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 9 C 0.08 4.63 5.58 -21.29 -0.12 4.51 16 10 C -0.19 -10.24 8.70 22.73 0.20 -10.04 16 11 C -0.09 -4.02 9.67 22.22 0.21 -3.81 16 12 C -0.20 -8.55 5.16 -19.67 -0.10 -8.66 16 13 C 0.00 -0.01 5.76 71.24 0.41 0.40 16 14 S -0.29 -9.16 21.14 -56.49 -1.19 -10.35 16 15 C -0.09 -2.02 2.85 30.69 0.09 -1.93 16 16 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 17 C -0.10 -1.94 5.32 30.71 0.16 -1.77 16 18 C -0.14 -2.04 6.14 30.68 0.19 -1.85 16 19 C 0.05 0.75 6.84 72.01 0.49 1.25 16 20 O -0.40 -8.72 10.77 -148.98 -1.60 -10.33 16 21 C 0.07 1.61 6.01 72.01 0.43 2.04 16 22 C -0.07 -3.07 9.67 22.22 0.21 -2.85 16 23 C -0.24 -12.11 9.80 22.73 0.22 -11.89 16 24 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 25 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 26 H 0.10 4.43 8.06 -2.91 -0.02 4.40 16 27 H 0.09 2.63 7.16 -2.39 -0.02 2.62 16 28 H 0.08 2.52 8.08 -2.39 -0.02 2.50 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 2.07 7.04 -2.39 -0.02 2.05 16 37 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -59.79 323.40 3.56 -56.23 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 1.03 Total: 26.29 kcal Atomic # 6 Polarization: -62.28 SS G_CDS: 3.06 Total: -59.23 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.24 Total: -42.85 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -1.60 Total: -10.33 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Atomic # 16 Polarization: -9.16 SS G_CDS: -1.19 Total: -10.35 kcal Total: -59.79 3.56 -56.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342436787.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.517 kcal (2) G-P(sol) polarization free energy of solvation -59.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds