Wall clock time and date at job start Mon Mar 30 2020 23:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 119.99708 * 2 1 4 4 H 1.48504 * 109.47087 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47544 * 300.00134 * 3 2 1 6 6 H 1.48508 * 109.47154 * 60.00535 * 3 2 1 7 7 C 1.39939 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00086 * 197.85761 * 7 2 1 9 9 C 1.41398 * 120.00183 * 17.85995 * 7 2 1 10 10 C 1.40715 * 120.24452 * 204.37647 * 9 7 2 11 11 C 1.37619 * 119.74470 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24883 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.75036 * 179.97438 * 12 11 10 14 14 S 1.81406 * 109.47060 * 90.00084 * 13 12 11 15 15 C 1.81405 * 102.99849 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.46755 * 179.97438 * 15 14 13 17 17 H 1.08988 * 109.90336 * 305.52441 * 16 15 14 18 18 C 1.54381 * 109.82938 * 184.58640 * 16 15 14 19 19 C 1.55309 * 102.25770 * 219.13688 * 18 16 15 20 20 C 1.54947 * 100.94023 * 34.13008 * 19 18 16 21 21 O 1.43238 * 109.82988 * 66.46016 * 16 15 14 22 22 C 1.38637 * 120.49976 * 0.25060 * 12 11 10 23 23 C 1.37617 * 120.24895 * 359.44821 * 22 12 11 24 24 H 0.96996 * 119.99781 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.12992 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.87799 * 180.02562 * 11 10 9 27 27 H 1.08994 * 109.47449 * 330.00178 * 13 12 11 28 28 H 1.09005 * 109.47117 * 210.00010 * 13 12 11 29 29 H 1.09006 * 109.46655 * 60.00235 * 15 14 13 30 30 H 1.08999 * 109.47216 * 300.00027 * 15 14 13 31 31 H 1.09004 * 110.85057 * 337.32373 * 18 16 15 32 32 H 1.09003 * 110.84850 * 100.94286 * 18 16 15 33 33 H 1.09008 * 111.11732 * 276.21524 * 19 18 16 34 34 H 1.08991 * 111.16436 * 152.06769 * 19 18 16 35 35 H 1.08999 * 110.30829 * 204.64603 * 20 19 18 36 36 H 1.08999 * 110.38887 * 82.51689 * 20 19 18 37 37 H 1.08003 * 119.87355 * 179.70851 * 22 12 11 38 38 H 1.07997 * 120.12751 * 180.27797 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2863 9 6 1.3522 -2.4068 -0.3766 10 6 1.8260 -3.6499 0.0819 11 6 1.1802 -4.8065 -0.2909 12 6 0.0671 -4.7501 -1.1154 13 6 -0.6312 -6.0237 -1.5172 14 16 -1.9229 -6.4135 -0.3046 15 6 -2.6377 -7.9508 -0.9498 16 6 -3.7611 -8.4192 -0.0228 17 1 -3.3887 -8.5042 0.9979 18 6 -4.2983 -9.7857 -0.4999 19 6 -5.8266 -9.6392 -0.2658 20 6 -6.0279 -8.1336 -0.5715 21 8 -4.8481 -7.4875 -0.0674 22 6 -0.4051 -3.5314 -1.5778 23 6 0.2213 -2.3616 -1.2127 24 1 -0.4850 0.8400 0.0004 25 1 2.6932 -3.6962 0.7239 26 1 1.5418 -5.7617 0.0601 27 1 0.0916 -6.8387 -1.5527 28 1 -1.0830 -5.8956 -2.5009 29 1 -1.8648 -8.7179 -0.9998 30 1 -3.0393 -7.7741 -1.9476 31 1 -4.0809 -9.9405 -1.5568 32 1 -3.8892 -10.5956 0.1041 33 1 -6.0895 -9.8690 0.7669 34 1 -6.3924 -10.2601 -0.9602 35 1 -6.9133 -7.7584 -0.0582 36 1 -6.1176 -7.9729 -1.6458 37 1 -1.2703 -3.4996 -2.2234 38 1 -0.1509 -1.4130 -1.5704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342552299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:18 Heat of formation + Delta-G solvation = -44.932314 kcal Electronic energy + Delta-G solvation = -18207.816672 eV Core-core repulsion = 15333.284128 eV Total energy + Delta-G solvation = -2874.532544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.52969 -37.59303 -33.97969 -32.45482 -31.59354 -31.19247 -29.29084 -27.56741 -26.26710 -23.89308 -22.01904 -21.28758 -20.99117 -19.95428 -17.31266 -17.12916 -16.16586 -15.82687 -15.30615 -14.53554 -14.28594 -14.10773 -13.89808 -13.72858 -13.59617 -13.27913 -12.60396 -12.57175 -11.98457 -11.94144 -11.90516 -11.71284 -11.38444 -11.25607 -11.09603 -11.04460 -10.98028 -10.50035 -10.36607 -9.75582 -9.59982 -9.40913 -9.36502 -9.10221 -7.46589 -7.28291 -7.06857 -6.78617 -4.36101 1.94479 2.79774 3.06476 3.07688 3.09746 3.12630 3.44796 3.74173 3.91496 4.25253 4.50607 4.63197 4.66070 4.95411 5.01185 5.15696 5.39381 5.42871 5.45791 5.52892 5.63055 5.65283 5.67048 5.76727 5.84058 5.98539 6.19036 6.35711 6.40248 6.95129 6.95953 7.04955 7.26528 7.34713 7.60267 7.83313 8.03735 8.09800 8.27410 8.62065 8.86578 8.95233 10.15061 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037800 B = 0.003100 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.553583 B = 9030.035978 C = 9491.370785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.228 4.228 11 C -0.068 4.068 12 C -0.209 4.209 13 C -0.007 4.007 14 S -0.255 6.255 15 C -0.112 4.112 16 C 0.100 3.900 17 H 0.088 0.912 18 C -0.148 4.148 19 C -0.156 4.156 20 C 0.047 3.953 21 O -0.362 6.362 22 C -0.078 4.078 23 C -0.167 4.167 24 H 0.281 0.719 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 -14.728 -2.663 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.112 3.888 10 C -0.248 4.248 11 C -0.088 4.088 12 C -0.213 4.213 13 C -0.154 4.154 14 S -0.024 6.024 15 C -0.260 4.260 16 C 0.041 3.959 17 H 0.105 0.895 18 C -0.187 4.187 19 C -0.194 4.194 20 C -0.030 4.030 21 O -0.281 6.281 22 C -0.098 4.098 23 C -0.187 4.187 24 H 0.092 0.908 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.752 -13.854 -1.684 16.473 hybrid contribution 0.588 -0.163 -1.148 1.300 sum -8.164 -14.017 -2.832 16.467 Atomic orbital electron populations 1.69848 1.07631 1.29311 1.34206 1.25960 0.94739 1.01458 0.92267 0.86259 0.80999 0.80863 0.78615 1.18347 1.19649 1.19921 1.19681 0.98194 0.91271 1.39448 0.90247 1.17671 0.90923 0.92062 0.88101 1.20946 1.04018 0.92748 1.07068 1.20355 0.95159 0.96599 0.96682 1.18399 1.00946 0.91605 1.10328 1.22004 0.96335 0.99413 0.97602 1.87656 1.44390 1.29784 1.40559 1.23782 1.00192 0.99831 1.02193 1.22426 0.86996 0.87506 0.98976 0.89450 1.23204 0.95534 0.97386 1.02582 1.23272 0.96026 0.97266 1.02827 1.23388 0.89367 0.91310 0.98958 1.88616 1.18581 1.35309 1.85592 1.20523 0.97804 0.92458 0.99058 1.21286 0.99527 0.96653 1.01231 0.90753 0.88852 0.89355 0.91524 0.91415 0.89968 0.90491 0.90336 0.89801 0.90301 0.90010 0.89764 0.92384 0.89337 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.50 10.95 55.55 0.61 -19.89 16 2 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 18.62 29.59 -169.99 -5.03 13.59 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.46 -12.15 9.05 -37.74 -0.34 -12.49 16 8 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 9 C 0.12 3.12 5.57 -106.82 -0.60 2.53 16 10 C -0.23 -5.69 9.80 -38.87 -0.38 -6.07 16 11 C -0.07 -1.56 9.67 -39.66 -0.38 -1.94 16 12 C -0.21 -4.70 5.16 -104.33 -0.54 -5.24 16 13 C -0.01 -0.13 6.06 36.00 0.22 0.09 16 14 S -0.26 -4.73 21.55 -107.50 -2.32 -7.05 16 15 C -0.11 -1.50 5.50 37.16 0.20 -1.30 16 16 C 0.10 1.22 3.51 -26.01 -0.09 1.13 16 17 H 0.09 1.11 8.14 -51.94 -0.42 0.69 16 18 C -0.15 -1.25 6.54 -24.78 -0.16 -1.41 16 19 C -0.16 -1.19 7.16 -24.48 -0.18 -1.37 16 20 C 0.05 0.47 7.78 38.19 0.30 0.76 16 21 O -0.36 -5.21 10.83 -35.23 -0.38 -5.59 16 22 C -0.08 -1.89 9.67 -39.66 -0.38 -2.27 16 23 C -0.17 -4.42 8.70 -38.87 -0.34 -4.76 16 24 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 25 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 26 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 27 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 28 H 0.07 1.18 8.08 -51.92 -0.42 0.76 16 29 H 0.08 0.96 8.14 -51.92 -0.42 0.53 16 30 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.08 0.61 7.85 -51.93 -0.41 0.20 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.97 8.06 -52.48 -0.42 1.55 16 38 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 LS Contribution 329.23 15.07 4.96 4.96 Total: -1.00 -29.10 329.23 -10.69 -39.79 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.77 Total: 4.74 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: -2.76 Total: -30.55 kcal Atomic # 7 Polarization: -20.50 SS G_CDS: 0.61 Total: -19.89 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.38 Total: -5.59 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Atomic # 16 Polarization: -4.73 SS G_CDS: -2.32 Total: -7.05 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.10 -10.69 -39.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342552299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.142 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds