Wall clock time and date at job start Mon Mar 30 2020 23:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 119.99708 * 2 1 4 4 H 1.48504 * 109.47087 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47544 * 300.00134 * 3 2 1 6 6 H 1.48508 * 109.47154 * 60.00535 * 3 2 1 7 7 C 1.39939 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00086 * 197.85761 * 7 2 1 9 9 C 1.41398 * 120.00183 * 17.85995 * 7 2 1 10 10 C 1.40715 * 120.24452 * 204.37647 * 9 7 2 11 11 C 1.37619 * 119.74470 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24883 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.75036 * 179.97438 * 12 11 10 14 14 S 1.81406 * 109.47060 * 90.00084 * 13 12 11 15 15 C 1.81405 * 102.99849 * 179.97438 * 14 13 12 16 16 C 1.52996 * 109.46755 * 179.97438 * 15 14 13 17 17 H 1.08988 * 109.90336 * 305.52441 * 16 15 14 18 18 C 1.54381 * 109.82938 * 184.58640 * 16 15 14 19 19 C 1.55309 * 102.25770 * 219.13688 * 18 16 15 20 20 C 1.54947 * 100.94023 * 34.13008 * 19 18 16 21 21 O 1.43238 * 109.82988 * 66.46016 * 16 15 14 22 22 C 1.38637 * 120.49976 * 0.25060 * 12 11 10 23 23 C 1.37617 * 120.24895 * 359.44821 * 22 12 11 24 24 H 0.96996 * 119.99781 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.12992 * 0.02562 * 10 9 7 26 26 H 1.08002 * 119.87799 * 180.02562 * 11 10 9 27 27 H 1.08994 * 109.47449 * 330.00178 * 13 12 11 28 28 H 1.09005 * 109.47117 * 210.00010 * 13 12 11 29 29 H 1.09006 * 109.46655 * 60.00235 * 15 14 13 30 30 H 1.08999 * 109.47216 * 300.00027 * 15 14 13 31 31 H 1.09004 * 110.85057 * 337.32373 * 18 16 15 32 32 H 1.09003 * 110.84850 * 100.94286 * 18 16 15 33 33 H 1.09008 * 111.11732 * 276.21524 * 19 18 16 34 34 H 1.08991 * 111.16436 * 152.06769 * 19 18 16 35 35 H 1.08999 * 110.30829 * 204.64603 * 20 19 18 36 36 H 1.08999 * 110.38887 * 82.51689 * 20 19 18 37 37 H 1.08003 * 119.87355 * 179.70851 * 22 12 11 38 38 H 1.07997 * 120.12751 * 180.27797 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0490 -1.2345 0.2863 9 6 1.3522 -2.4068 -0.3766 10 6 1.8260 -3.6499 0.0819 11 6 1.1802 -4.8065 -0.2909 12 6 0.0671 -4.7501 -1.1154 13 6 -0.6312 -6.0237 -1.5172 14 16 -1.9229 -6.4135 -0.3046 15 6 -2.6377 -7.9508 -0.9498 16 6 -3.7611 -8.4192 -0.0228 17 1 -3.3887 -8.5042 0.9979 18 6 -4.2983 -9.7857 -0.4999 19 6 -5.8266 -9.6392 -0.2658 20 6 -6.0279 -8.1336 -0.5715 21 8 -4.8481 -7.4875 -0.0674 22 6 -0.4051 -3.5314 -1.5778 23 6 0.2213 -2.3616 -1.2127 24 1 -0.4850 0.8400 0.0004 25 1 2.6932 -3.6962 0.7239 26 1 1.5418 -5.7617 0.0601 27 1 0.0916 -6.8387 -1.5527 28 1 -1.0830 -5.8956 -2.5009 29 1 -1.8648 -8.7179 -0.9998 30 1 -3.0393 -7.7741 -1.9476 31 1 -4.0809 -9.9405 -1.5568 32 1 -3.8892 -10.5956 0.1041 33 1 -6.0895 -9.8690 0.7669 34 1 -6.3924 -10.2601 -0.9602 35 1 -6.9133 -7.7584 -0.0582 36 1 -6.1176 -7.9729 -1.6458 37 1 -1.2703 -3.4996 -2.2234 38 1 -0.1509 -1.4130 -1.5704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342552299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:18 Heat of formation + Delta-G solvation = -59.387450 kcal Electronic energy + Delta-G solvation = -18208.443494 eV Core-core repulsion = 15333.284128 eV Total energy + Delta-G solvation = -2875.159366 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37942 -39.48227 -35.85449 -33.32208 -33.00958 -32.42325 -31.21152 -29.33750 -27.20450 -25.67512 -22.92708 -22.71978 -22.28625 -21.68343 -19.24929 -17.99367 -17.35222 -17.06236 -16.93867 -16.02443 -15.71745 -15.66684 -15.37646 -14.93435 -14.75369 -14.33262 -14.16896 -13.87228 -13.79044 -13.42586 -13.21534 -12.86810 -12.74475 -12.64601 -12.55892 -12.18124 -12.08102 -11.88781 -11.72605 -11.46935 -11.31042 -11.01523 -10.83659 -10.47777 -9.39365 -9.19285 -8.66273 -8.52785 -6.35046 0.45441 1.11586 1.19502 1.37982 1.53219 1.55647 1.91440 2.19995 2.74762 2.93835 3.55867 3.68923 3.73964 3.95704 4.11245 4.14062 4.16246 4.21538 4.40242 4.50629 4.54644 4.58270 4.64278 4.66999 4.81695 4.90315 4.95592 5.02361 5.03420 5.13426 5.25838 5.33147 5.42444 5.67632 5.91853 6.07623 6.12203 6.17720 6.34732 6.66876 6.90844 7.00069 8.30569 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037800 B = 0.003100 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.553583 B = 9030.035978 C = 9491.370785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.033 3.967 3 Si 0.986 3.014 4 H -0.256 1.256 5 H -0.263 1.263 6 H -0.266 1.266 7 C -0.495 4.495 8 H 0.078 0.922 9 C 0.083 3.917 10 C -0.244 4.244 11 C -0.071 4.071 12 C -0.201 4.201 13 C 0.003 3.997 14 S -0.318 6.318 15 C -0.089 4.089 16 C 0.092 3.908 17 H 0.076 0.924 18 C -0.138 4.138 19 C -0.147 4.147 20 C 0.035 3.965 21 O -0.401 6.401 22 C -0.087 4.087 23 C -0.191 4.191 24 H 0.289 0.711 25 H 0.100 0.900 26 H 0.118 0.882 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.759 -17.037 -3.290 19.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.183 4.183 3 Si 0.806 3.194 4 H -0.180 1.180 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.525 4.525 8 H 0.096 0.904 9 C 0.080 3.920 10 C -0.264 4.264 11 C -0.090 4.090 12 C -0.204 4.204 13 C -0.144 4.144 14 S -0.088 6.088 15 C -0.237 4.237 16 C 0.034 3.966 17 H 0.094 0.906 18 C -0.177 4.177 19 C -0.184 4.184 20 C -0.041 4.041 21 O -0.321 6.321 22 C -0.107 4.107 23 C -0.211 4.211 24 H 0.100 0.900 25 H 0.118 0.882 26 H 0.136 0.864 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.270 -16.166 -2.315 18.779 hybrid contribution 0.595 0.324 -0.968 1.181 sum -8.675 -15.843 -3.283 18.358 Atomic orbital electron populations 1.69905 1.09188 1.30656 1.35091 1.26847 0.95483 1.04791 0.91148 0.85114 0.79434 0.75890 0.78983 1.17952 1.18785 1.19029 1.19918 0.98455 0.92480 1.41601 0.90352 1.18018 0.91732 0.93238 0.89006 1.21171 1.04656 0.93015 1.07520 1.20674 0.94958 0.97153 0.96255 1.18792 1.00396 0.92764 1.08407 1.21906 0.96621 0.98053 0.97833 1.87841 1.45144 1.34327 1.41470 1.23869 1.00835 0.96698 1.02287 1.22548 0.86394 0.89324 0.98356 0.90563 1.23193 0.95725 0.95257 1.03545 1.23264 0.95788 0.95601 1.03789 1.23621 0.88247 0.93042 0.99191 1.88580 1.20243 1.37301 1.86012 1.20745 0.98046 0.92593 0.99296 1.21251 1.00469 0.96884 1.02481 0.90041 0.88162 0.86439 0.89022 0.90114 0.87422 0.89845 0.89103 0.87902 0.89902 0.87565 0.89304 0.91953 0.88048 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.59 10.95 21.83 0.24 -44.35 16 2 C 0.03 1.68 5.14 85.25 0.44 2.12 16 3 Si 0.99 38.94 29.59 68.60 2.03 40.97 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.50 -27.44 9.05 23.46 0.21 -27.23 16 8 H 0.08 4.17 7.91 -2.91 -0.02 4.14 16 9 C 0.08 4.66 5.57 -21.29 -0.12 4.54 16 10 C -0.24 -12.42 9.80 22.73 0.22 -12.20 16 11 C -0.07 -3.20 9.67 22.22 0.21 -2.98 16 12 C -0.20 -8.89 5.16 -19.67 -0.10 -8.99 16 13 C 0.00 0.09 6.06 71.24 0.43 0.52 16 14 S -0.32 -11.38 21.55 -56.49 -1.22 -12.60 16 15 C -0.09 -2.14 5.50 71.98 0.40 -1.75 16 16 C 0.09 2.06 3.51 31.06 0.11 2.17 16 17 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 18 C -0.14 -1.81 6.54 31.86 0.21 -1.61 16 19 C -0.15 -1.76 7.16 32.05 0.23 -1.53 16 20 C 0.04 0.64 7.78 72.65 0.56 1.20 16 21 O -0.40 -11.11 10.83 -148.98 -1.61 -12.73 16 22 C -0.09 -4.25 9.67 22.22 0.21 -4.04 16 23 C -0.19 -10.53 8.70 22.73 0.20 -10.33 16 24 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 25 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 26 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 27 H 0.09 2.75 8.08 -2.39 -0.02 2.73 16 28 H 0.08 2.61 8.08 -2.39 -0.02 2.59 16 29 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.09 1.00 7.85 -2.38 -0.02 0.98 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 38 H 0.10 5.81 6.16 -2.91 -0.02 5.79 16 Total: -1.00 -65.86 329.23 3.69 -62.17 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 1.03 Total: 26.63 kcal Atomic # 6 Polarization: -63.31 SS G_CDS: 3.22 Total: -60.09 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.24 Total: -44.35 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -1.61 Total: -12.73 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 16 Polarization: -11.38 SS G_CDS: -1.22 Total: -12.60 kcal Total: -65.86 3.69 -62.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342552299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.783 kcal (2) G-P(sol) polarization free energy of solvation -65.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds