Wall clock time and date at job start Mon Mar 30 2020 23:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86794 * 120.00156 * 2 1 4 4 H 1.48505 * 109.47297 * 269.99951 * 3 2 1 5 5 H 1.48504 * 109.47408 * 30.00071 * 3 2 1 6 6 H 1.48503 * 109.47260 * 150.00023 * 3 2 1 7 7 C 1.39951 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00101 * 197.84610 * 7 2 1 9 9 C 1.41396 * 119.99786 * 17.85197 * 7 2 1 10 10 C 1.40720 * 120.24407 * 24.37877 * 9 7 2 11 11 C 1.37618 * 119.74343 * 180.02562 * 10 9 7 12 12 C 1.38630 * 120.25024 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.75204 * 180.02562 * 12 11 10 14 14 S 1.81395 * 109.47406 * 89.99694 * 13 12 11 15 15 C 1.81403 * 103.00257 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47438 * 179.97438 * 15 14 13 17 17 H 1.09005 * 110.55066 * 61.42498 * 16 15 14 18 18 C 1.54997 * 110.62200 * 184.47225 * 16 15 14 19 19 C 1.54811 * 102.09039 * 155.52411 * 18 16 15 20 20 C 1.54092 * 104.19173 * 339.12316 * 19 18 16 21 21 O 1.43742 * 107.29493 * 357.96712 * 20 19 18 22 22 C 1.38633 * 120.50182 * 0.29207 * 12 11 10 23 23 C 1.37621 * 120.24988 * 359.45644 * 22 12 11 24 24 H 0.96995 * 119.99550 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.12778 * 0.04160 * 10 9 7 26 26 H 1.08001 * 119.87406 * 180.02562 * 11 10 9 27 27 H 1.09005 * 109.46959 * 329.99677 * 13 12 11 28 28 H 1.08999 * 109.47169 * 210.00249 * 13 12 11 29 29 H 1.09006 * 109.47034 * 59.99601 * 15 14 13 30 30 H 1.08999 * 109.46902 * 299.99885 * 15 14 13 31 31 H 1.09000 * 110.90009 * 37.32808 * 18 16 15 32 32 H 1.08994 * 110.90750 * 273.72996 * 18 16 15 33 33 H 1.08999 * 110.48654 * 220.44600 * 19 18 16 34 34 H 1.09001 * 110.48584 * 97.80069 * 19 18 16 35 35 H 1.08999 * 109.88332 * 117.39553 * 20 19 18 36 36 H 1.09003 * 109.88078 * 238.39820 * 20 19 18 37 37 H 1.08003 * 119.88033 * 179.70298 * 22 12 11 38 38 H 1.07994 * 120.13274 * 180.26735 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0080 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2872 9 6 1.3520 -2.4072 -0.3743 10 6 0.2206 -2.3627 -1.2099 11 6 -0.4102 -3.5322 -1.5679 12 6 0.0653 -4.7509 -1.1090 13 6 -0.6337 -6.0248 -1.5085 14 16 0.0958 -6.6593 -3.0433 15 6 -0.8616 -8.1677 -3.3572 16 6 -0.3600 -8.8323 -4.6408 17 1 0.6871 -9.1179 -4.5399 18 6 -1.2330 -10.0630 -4.9954 19 6 -1.0208 -10.1814 -6.5243 20 6 -0.5415 -8.7798 -6.9488 21 8 -0.5407 -7.9539 -5.7723 22 6 1.1758 -4.8063 -0.2810 23 6 1.8256 -3.6499 0.0857 24 1 -0.4849 0.8400 0.0004 25 1 -0.1511 -1.4145 -1.5690 26 1 -1.2784 -3.5006 -2.2093 27 1 -1.6934 -5.8237 -1.6660 28 1 -0.5182 -6.7660 -0.7177 29 1 -1.9155 -7.9126 -3.4685 30 1 -0.7407 -8.8555 -2.5203 31 1 -2.2812 -9.8766 -4.7614 32 1 -0.8741 -10.9553 -4.4825 33 1 -1.9583 -10.4307 -7.0214 34 1 -0.2593 -10.9287 -6.7470 35 1 0.4665 -8.8413 -7.3592 36 1 -1.2204 -8.3659 -7.6944 37 1 1.5349 -5.7609 0.0745 38 1 2.6931 -3.6956 0.7273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342552300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:22 Heat of formation + Delta-G solvation = -44.683834 kcal Electronic energy + Delta-G solvation = -18153.298215 eV Core-core repulsion = 15278.776446 eV Total energy + Delta-G solvation = -2874.521769 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.47706 -37.59833 -33.98697 -32.44193 -31.67271 -31.19814 -29.29459 -27.56796 -26.25126 -23.91076 -21.95624 -21.37331 -20.99785 -19.97352 -17.31673 -16.92697 -16.12811 -15.69430 -15.34988 -15.18193 -14.32033 -14.05663 -13.94601 -13.77077 -13.35277 -13.06013 -12.74950 -12.56779 -12.01228 -11.93638 -11.92795 -11.60152 -11.45759 -11.43533 -11.09817 -10.97200 -10.79560 -10.63866 -10.28777 -9.82809 -9.67129 -9.44242 -9.37724 -9.11065 -7.47086 -7.29212 -7.10633 -6.79937 -4.36876 1.90017 2.78781 3.05250 3.07051 3.09939 3.10079 3.43834 3.73973 3.91047 4.30383 4.50462 4.62822 4.67901 4.90324 4.99021 5.15738 5.30149 5.44029 5.52163 5.56687 5.62546 5.64379 5.66810 5.77948 5.83457 5.88128 6.19834 6.34678 6.40291 6.80735 6.94807 7.04176 7.26049 7.34148 7.59753 7.82746 8.03374 8.09314 8.26825 8.61458 8.85950 8.94672 10.13859 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.039356 B = 0.002996 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.275738 B = 9344.232375 C = 9627.509254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.116 3.884 10 C -0.167 4.167 11 C -0.078 4.078 12 C -0.209 4.209 13 C -0.007 4.007 14 S -0.256 6.256 15 C -0.096 4.096 16 C 0.096 3.904 17 H 0.077 0.923 18 C -0.147 4.147 19 C -0.155 4.155 20 C 0.043 3.957 21 O -0.358 6.358 22 C -0.068 4.068 23 C -0.228 4.228 24 H 0.282 0.718 25 H 0.119 0.881 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 -15.201 -8.198 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.113 3.887 10 C -0.187 4.187 11 C -0.098 4.098 12 C -0.212 4.212 13 C -0.154 4.154 14 S -0.025 6.025 15 C -0.244 4.244 16 C 0.037 3.963 17 H 0.095 0.905 18 C -0.187 4.187 19 C -0.193 4.193 20 C -0.034 4.034 21 O -0.277 6.277 22 C -0.088 4.088 23 C -0.248 4.248 24 H 0.093 0.907 25 H 0.137 0.863 26 H 0.107 0.893 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.775 -14.449 -8.806 17.147 hybrid contribution -0.701 -0.034 0.709 0.998 sum -3.477 -14.483 -8.097 16.953 Atomic orbital electron populations 1.69827 1.07648 1.29379 1.34439 1.25954 0.94753 1.01458 0.92172 0.86289 0.80490 0.80407 0.79423 1.19164 1.20278 1.18552 1.19666 0.98213 0.91264 1.39477 0.90249 1.17674 0.90925 0.92054 0.88059 1.21293 0.99367 0.96738 1.01269 1.20525 0.98335 0.92477 0.98471 1.18387 1.02254 0.91316 1.09288 1.22007 1.00255 0.98697 0.94405 1.87590 1.51276 1.28141 1.35482 1.23367 1.02911 0.99488 0.98603 1.22796 0.98754 0.88495 0.86241 0.90520 1.23191 1.01265 0.98502 0.95693 1.22935 1.02284 0.98037 0.96077 1.23133 1.00790 0.90095 0.89370 1.89064 1.94102 1.30375 1.14146 1.20354 0.94726 0.96545 0.97164 1.20944 1.03757 0.92828 1.07261 0.90742 0.86324 0.89296 0.91280 0.91448 0.90048 0.89491 0.90292 0.90068 0.90513 0.90706 0.92465 0.89940 0.89341 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.32 10.95 55.55 0.61 -19.71 16 2 C 0.08 1.88 5.14 -17.34 -0.09 1.80 16 3 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -12.14 9.05 -37.74 -0.34 -12.48 16 8 H 0.08 2.03 7.91 -52.49 -0.41 1.61 16 9 C 0.12 3.13 5.58 -106.82 -0.60 2.53 16 10 C -0.17 -4.41 8.70 -38.87 -0.34 -4.75 16 11 C -0.08 -1.87 9.67 -39.66 -0.38 -2.26 16 12 C -0.21 -4.67 5.16 -104.33 -0.54 -5.21 16 13 C -0.01 -0.13 6.06 36.01 0.22 0.09 16 14 S -0.26 -4.61 21.45 -107.50 -2.31 -6.92 16 15 C -0.10 -1.26 5.73 37.15 0.21 -1.04 16 16 C 0.10 1.14 3.37 -25.68 -0.09 1.06 16 17 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 18 C -0.15 -1.26 6.59 -24.72 -0.16 -1.42 16 19 C -0.16 -1.19 7.01 -25.21 -0.18 -1.37 16 20 C 0.04 0.43 7.70 37.73 0.29 0.72 16 21 O -0.36 -5.08 10.92 -35.23 -0.38 -5.46 16 22 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 23 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 24 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 25 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 26 H 0.09 1.98 8.06 -52.49 -0.42 1.55 16 27 H 0.07 1.20 8.08 -51.92 -0.42 0.78 16 28 H 0.07 1.12 8.08 -51.92 -0.42 0.70 16 29 H 0.08 1.05 8.13 -51.92 -0.42 0.62 16 30 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 31 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 38 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 329.33 15.07 4.96 4.96 Total: -1.00 -28.68 329.33 -10.69 -39.37 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.78 Total: 4.48 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: -2.76 Total: -30.32 kcal Atomic # 7 Polarization: -20.32 SS G_CDS: 0.61 Total: -19.71 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.38 Total: -5.46 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Atomic # 16 Polarization: -4.61 SS G_CDS: -2.31 Total: -6.92 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.68 -10.69 -39.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342552300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.319 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds