Wall clock time and date at job start Mon Mar 30 2020 23:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86794 * 120.00156 * 2 1 4 4 H 1.48505 * 109.47297 * 269.99951 * 3 2 1 5 5 H 1.48504 * 109.47408 * 30.00071 * 3 2 1 6 6 H 1.48503 * 109.47260 * 150.00023 * 3 2 1 7 7 C 1.39951 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00101 * 197.84610 * 7 2 1 9 9 C 1.41396 * 119.99786 * 17.85197 * 7 2 1 10 10 C 1.40720 * 120.24407 * 24.37877 * 9 7 2 11 11 C 1.37618 * 119.74343 * 180.02562 * 10 9 7 12 12 C 1.38630 * 120.25024 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.75204 * 180.02562 * 12 11 10 14 14 S 1.81395 * 109.47406 * 89.99694 * 13 12 11 15 15 C 1.81403 * 103.00257 * 180.02562 * 14 13 12 16 16 C 1.52995 * 109.47438 * 179.97438 * 15 14 13 17 17 H 1.09005 * 110.55066 * 61.42498 * 16 15 14 18 18 C 1.54997 * 110.62200 * 184.47225 * 16 15 14 19 19 C 1.54811 * 102.09039 * 155.52411 * 18 16 15 20 20 C 1.54092 * 104.19173 * 339.12316 * 19 18 16 21 21 O 1.43742 * 107.29493 * 357.96712 * 20 19 18 22 22 C 1.38633 * 120.50182 * 0.29207 * 12 11 10 23 23 C 1.37621 * 120.24988 * 359.45644 * 22 12 11 24 24 H 0.96995 * 119.99550 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.12778 * 0.04160 * 10 9 7 26 26 H 1.08001 * 119.87406 * 180.02562 * 11 10 9 27 27 H 1.09005 * 109.46959 * 329.99677 * 13 12 11 28 28 H 1.08999 * 109.47169 * 210.00249 * 13 12 11 29 29 H 1.09006 * 109.47034 * 59.99601 * 15 14 13 30 30 H 1.08999 * 109.46902 * 299.99885 * 15 14 13 31 31 H 1.09000 * 110.90009 * 37.32808 * 18 16 15 32 32 H 1.08994 * 110.90750 * 273.72996 * 18 16 15 33 33 H 1.08999 * 110.48654 * 220.44600 * 19 18 16 34 34 H 1.09001 * 110.48584 * 97.80069 * 19 18 16 35 35 H 1.08999 * 109.88332 * 117.39553 * 20 19 18 36 36 H 1.09003 * 109.88078 * 238.39820 * 20 19 18 37 37 H 1.08003 * 119.88033 * 179.70298 * 22 12 11 38 38 H 1.07994 * 120.13274 * 180.26735 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0080 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2872 9 6 1.3520 -2.4072 -0.3743 10 6 0.2206 -2.3627 -1.2099 11 6 -0.4102 -3.5322 -1.5679 12 6 0.0653 -4.7509 -1.1090 13 6 -0.6337 -6.0248 -1.5085 14 16 0.0958 -6.6593 -3.0433 15 6 -0.8616 -8.1677 -3.3572 16 6 -0.3600 -8.8323 -4.6408 17 1 0.6871 -9.1179 -4.5399 18 6 -1.2330 -10.0630 -4.9954 19 6 -1.0208 -10.1814 -6.5243 20 6 -0.5415 -8.7798 -6.9488 21 8 -0.5407 -7.9539 -5.7723 22 6 1.1758 -4.8063 -0.2810 23 6 1.8256 -3.6499 0.0857 24 1 -0.4849 0.8400 0.0004 25 1 -0.1511 -1.4145 -1.5690 26 1 -1.2784 -3.5006 -2.2093 27 1 -1.6934 -5.8237 -1.6660 28 1 -0.5182 -6.7660 -0.7177 29 1 -1.9155 -7.9126 -3.4685 30 1 -0.7407 -8.8555 -2.5203 31 1 -2.2812 -9.8766 -4.7614 32 1 -0.8741 -10.9553 -4.4825 33 1 -1.9583 -10.4307 -7.0214 34 1 -0.2593 -10.9287 -6.7470 35 1 0.4665 -8.8413 -7.3592 36 1 -1.2204 -8.3659 -7.6944 37 1 1.5349 -5.7609 0.0745 38 1 2.6931 -3.6956 0.7273 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342552300.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:51:21 Heat of formation + Delta-G solvation = -58.674427 kcal Electronic energy + Delta-G solvation = -18153.904892 eV Core-core repulsion = 15278.776446 eV Total energy + Delta-G solvation = -2875.128447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.31062 -39.47974 -35.85236 -33.30393 -33.00372 -32.48095 -31.20804 -29.32993 -27.15828 -25.67993 -22.92848 -22.77689 -22.20440 -21.73506 -19.24619 -17.80852 -17.35299 -17.08145 -16.64099 -16.12982 -16.01795 -15.68477 -15.63087 -15.01498 -14.43605 -14.30604 -14.13994 -13.83963 -13.69787 -13.41248 -13.34466 -12.92525 -12.76223 -12.61172 -12.43327 -12.28702 -12.19047 -11.80747 -11.58507 -11.50307 -11.29507 -11.04284 -10.83869 -10.54502 -9.39077 -9.19347 -8.66712 -8.51892 -6.34877 0.44308 1.11759 1.19717 1.37884 1.51239 1.55499 1.90092 2.19851 2.74873 2.93171 3.57880 3.73350 3.76369 3.99893 4.08158 4.14465 4.14955 4.20306 4.41642 4.50903 4.53295 4.58382 4.61606 4.69243 4.84675 4.89056 4.93987 5.02649 5.07983 5.13424 5.21833 5.33313 5.42595 5.67792 5.92011 5.99123 6.07823 6.17961 6.34844 6.66933 6.90906 7.00155 8.30173 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.039356 B = 0.002996 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.275738 B = 9344.232375 C = 9627.509254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.034 3.966 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.496 4.496 8 H 0.077 0.923 9 C 0.083 3.917 10 C -0.191 4.191 11 C -0.087 4.087 12 C -0.200 4.200 13 C 0.001 3.999 14 S -0.309 6.309 15 C -0.076 4.076 16 C 0.088 3.912 17 H 0.073 0.927 18 C -0.138 4.138 19 C -0.148 4.148 20 C 0.033 3.967 21 O -0.397 6.397 22 C -0.070 4.070 23 C -0.244 4.244 24 H 0.289 0.711 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 -17.483 -8.687 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.526 4.526 8 H 0.095 0.905 9 C 0.080 3.920 10 C -0.211 4.211 11 C -0.107 4.107 12 C -0.203 4.203 13 C -0.146 4.146 14 S -0.079 6.079 15 C -0.224 4.224 16 C 0.030 3.970 17 H 0.091 0.909 18 C -0.177 4.177 19 C -0.186 4.186 20 C -0.044 4.044 21 O -0.317 6.317 22 C -0.090 4.090 23 C -0.264 4.264 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.131 0.869 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.308 -16.731 -9.282 19.417 hybrid contribution -0.615 0.432 0.751 1.063 sum -3.923 -16.299 -8.530 18.810 Atomic orbital electron populations 1.69876 1.09069 1.30698 1.35063 1.26810 0.95529 1.04652 0.91137 0.85175 0.79123 0.75731 0.79514 1.18803 1.19009 1.18066 1.19892 0.98437 0.92517 1.41739 0.90477 1.18016 0.91736 0.93229 0.88986 1.21253 1.00363 0.96956 1.02529 1.20744 0.98675 0.92619 0.98628 1.18782 1.01487 0.92519 1.07521 1.21906 1.00186 0.97256 0.95280 1.87732 1.52922 1.32093 1.35108 1.23476 1.01944 0.96689 1.00294 1.22938 0.99367 0.89496 0.85222 0.90929 1.23175 1.00759 0.97442 0.96355 1.22934 1.03485 0.96697 0.95474 1.23346 1.01314 0.91293 0.88408 1.89024 1.94291 1.32568 1.15822 1.20675 0.94512 0.97089 0.96753 1.21171 1.04422 0.93086 1.07696 0.90002 0.88109 0.88034 0.90213 0.89075 0.89531 0.86898 0.89876 0.87860 0.88984 0.89153 0.92333 0.89393 0.86383 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.82 10.95 21.83 0.24 -43.58 16 2 C 0.03 1.76 5.14 85.26 0.44 2.19 16 3 Si 0.98 38.92 29.59 68.60 2.03 40.95 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 6 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 7 C -0.50 -27.51 9.05 23.46 0.21 -27.30 16 8 H 0.08 4.12 7.91 -2.91 -0.02 4.09 16 9 C 0.08 4.67 5.58 -21.29 -0.12 4.55 16 10 C -0.19 -10.53 8.70 22.73 0.20 -10.33 16 11 C -0.09 -4.23 9.67 22.22 0.21 -4.02 16 12 C -0.20 -8.82 5.16 -19.68 -0.10 -8.92 16 13 C 0.00 0.02 6.06 71.24 0.43 0.45 16 14 S -0.31 -10.64 21.45 -56.49 -1.21 -11.85 16 15 C -0.08 -1.78 5.73 71.98 0.41 -1.37 16 16 C 0.09 1.89 3.37 31.28 0.11 2.00 16 17 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 18 C -0.14 -1.86 6.59 31.90 0.21 -1.65 16 19 C -0.15 -1.78 7.01 31.58 0.22 -1.56 16 20 C 0.03 0.60 7.70 72.35 0.56 1.16 16 21 O -0.40 -10.77 10.92 -148.98 -1.63 -12.39 16 22 C -0.07 -3.18 9.67 22.22 0.21 -2.96 16 23 C -0.24 -12.39 9.80 22.73 0.22 -12.17 16 24 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 25 H 0.10 5.79 6.16 -2.91 -0.02 5.77 16 26 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 27 H 0.08 2.59 8.08 -2.39 -0.02 2.57 16 28 H 0.09 2.73 8.08 -2.39 -0.02 2.71 16 29 H 0.09 1.97 8.13 -2.39 -0.02 1.95 16 30 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.08 1.07 8.05 -2.39 -0.02 1.05 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.12 4.55 8.06 -2.91 -0.02 4.52 16 38 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -64.58 329.33 3.68 -60.91 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 1.03 Total: 25.91 kcal Atomic # 6 Polarization: -63.16 SS G_CDS: 3.22 Total: -59.94 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.24 Total: -43.58 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -1.63 Total: -12.39 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Atomic # 16 Polarization: -10.64 SS G_CDS: -1.21 Total: -11.85 kcal Total: -64.58 3.68 -60.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342552300.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.233 kcal (2) G-P(sol) polarization free energy of solvation -64.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds