Wall clock time and date at job start Tue Mar 31 2020 01:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00167 * 2 1 4 4 C 1.50699 * 109.47059 * 275.00170 * 3 2 1 5 5 H 1.08001 * 120.00290 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00032 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99799 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00171 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47052 * 89.99762 * 8 6 4 10 10 H 1.48497 * 109.47027 * 209.99791 * 8 6 4 11 11 H 1.48498 * 109.47144 * 329.99939 * 8 6 4 12 12 S 1.65604 * 120.00296 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.39650 * 336.46299 * 12 2 1 14 14 O 1.42090 * 106.40369 * 203.54126 * 12 2 1 15 15 N 1.65600 * 107.21808 * 89.99936 * 12 2 1 16 16 C 1.47471 * 125.62907 * 270.02753 * 15 12 2 17 17 C 1.54906 * 104.81210 * 204.04788 * 16 15 12 18 18 C 1.55156 * 101.61451 * 323.04512 * 17 16 15 19 19 C 1.52999 * 110.71830 * 154.02508 * 18 17 16 20 20 O 1.42907 * 110.72012 * 277.11470 * 18 17 16 21 21 C 1.47017 * 125.65122 * 90.00167 * 15 12 2 22 22 H 1.08996 * 109.47193 * 270.00189 * 1 2 3 23 23 H 1.09005 * 109.47121 * 30.00054 * 1 2 3 24 24 H 1.08996 * 109.47089 * 150.00040 * 1 2 3 25 25 H 1.09002 * 109.46840 * 35.00163 * 3 2 1 26 26 H 1.09001 * 109.47509 * 155.00050 * 3 2 1 27 27 H 0.97004 * 119.99845 * 180.02562 * 7 6 4 28 28 H 1.09008 * 110.34870 * 85.22917 * 16 15 12 29 29 H 1.09001 * 110.40581 * 322.89953 * 16 15 12 30 30 H 1.09002 * 111.00655 * 204.94912 * 17 16 15 31 31 H 1.09002 * 111.00329 * 81.13838 * 17 16 15 32 32 H 1.08997 * 109.47604 * 61.45012 * 19 18 17 33 33 H 1.09001 * 109.47250 * 181.45068 * 19 18 17 34 34 H 1.09004 * 109.46922 * 301.45155 * 19 18 17 35 35 H 0.96700 * 113.99657 * 298.55132 * 20 18 17 36 36 H 1.08998 * 109.88206 * 59.57686 * 21 15 12 37 37 H 1.09004 * 110.01118 * 298.48779 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9289 1.1935 -2.2332 6 6 3.0007 2.9503 -1.6665 7 7 3.5035 3.6469 -0.6706 8 14 3.1797 3.5660 -3.4210 9 1 2.0195 4.4269 -3.7642 10 1 4.4333 4.3525 -3.5441 11 1 3.2286 2.4080 -4.3493 12 16 2.2931 -1.4341 0.0006 13 8 1.4113 -2.4062 0.5455 14 8 3.5759 -1.1565 0.5449 15 7 2.5382 -1.8593 -1.5810 16 6 1.6270 -2.6788 -2.4013 17 6 2.5282 -3.2912 -3.5025 18 6 3.5074 -2.1226 -3.7903 19 6 4.8357 -2.6512 -4.3353 20 8 2.9254 -1.1880 -4.7014 21 6 3.6996 -1.4820 -2.3996 22 1 -0.3633 0.0000 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6502 2.0043 0.5895 26 1 3.1858 1.1177 0.4343 27 1 3.9670 4.4805 -0.8472 28 1 0.8537 -2.0539 -2.8481 29 1 1.1771 -3.4670 -1.7975 30 1 1.9462 -3.5408 -4.3897 31 1 3.0619 -4.1652 -3.1293 32 1 4.6604 -3.1749 -5.2750 33 1 5.5163 -1.8170 -4.5059 34 1 5.2770 -3.3383 -3.6133 35 1 2.7130 -1.5629 -5.5671 36 1 4.6141 -1.8584 -1.9413 37 1 3.7521 -0.3975 -2.4951 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343102048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:30 Heat of formation + Delta-G solvation = -121.089123 kcal Electronic energy + Delta-G solvation = -21663.484513 eV Core-core repulsion = 18374.800299 eV Total energy + Delta-G solvation = -3288.684214 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.15518 -36.63615 -35.42398 -35.23887 -35.18833 -32.42207 -31.12900 -29.41791 -27.73546 -25.98292 -25.02118 -22.40131 -22.08194 -20.37880 -18.45705 -17.33737 -16.91718 -16.53791 -16.20887 -15.65999 -15.17296 -14.52794 -14.40919 -13.64659 -13.42419 -13.27539 -13.08756 -12.83067 -12.70072 -12.31721 -12.12026 -12.09782 -11.68316 -11.64388 -11.52000 -11.35902 -11.12018 -11.11437 -11.05957 -10.70885 -10.50586 -10.43149 -10.01874 -9.85432 -9.69538 -8.60279 -8.43418 -7.99148 -6.05123 -4.11277 1.25912 3.31410 3.38210 3.44997 3.52588 4.15771 4.20123 4.44247 4.49820 4.68112 4.83004 5.11629 5.28857 5.33031 5.36057 5.54375 5.61211 5.70183 5.73963 5.87108 6.01382 6.09095 6.11528 6.16355 6.24164 6.34883 6.49979 6.59003 6.79023 7.37333 7.48865 7.67839 7.79064 7.92590 8.21125 8.95310 9.55265 11.02742 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.010041 C = 0.006848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.899979 B = 2788.011719 C = 4087.787148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.996 5.996 3 C 0.243 3.757 4 C -0.537 4.537 5 H 0.066 0.934 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.891 3.109 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.265 1.265 12 S 2.802 3.198 13 O -0.997 6.997 14 O -0.974 6.974 15 N -1.014 6.014 16 C 0.123 3.877 17 C -0.154 4.154 18 C 0.118 3.882 19 C -0.170 4.170 20 O -0.541 6.541 21 C 0.132 3.868 22 H 0.044 0.956 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.263 0.737 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.370 0.630 36 H 0.077 0.923 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 -12.687 -7.479 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.838 5.838 3 C 0.121 3.879 4 C -0.576 4.576 5 H 0.084 0.916 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.189 1.189 12 S 2.811 3.189 13 O -0.982 6.982 14 O -0.959 6.959 15 N -0.852 5.852 16 C -0.003 4.003 17 C -0.193 4.193 18 C 0.076 3.924 19 C -0.228 4.228 20 O -0.345 6.345 21 C 0.007 3.993 22 H 0.062 0.938 23 H 0.092 0.908 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.216 0.784 36 H 0.095 0.905 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.749 -12.558 -6.032 14.041 hybrid contribution -0.134 0.409 -1.848 1.898 sum -1.883 -12.150 -7.881 14.604 Atomic orbital electron populations 1.21200 0.80169 1.02025 1.00512 1.57686 1.14214 1.23546 1.88311 1.19238 0.92123 0.78862 0.97663 1.21592 1.36334 1.06765 0.92927 0.91588 1.24953 0.95160 0.96524 0.97235 1.69949 1.36983 1.15152 1.30961 0.86589 0.77347 0.79132 0.85104 1.20841 1.21330 1.18947 1.01271 0.73051 0.72550 0.72010 1.93526 1.67420 1.60623 1.76593 1.93567 1.40888 1.85250 1.76161 1.59068 1.30217 1.65497 1.30447 1.21873 0.92533 0.93669 0.92182 1.23452 0.98361 0.98231 0.99302 1.22163 0.91706 0.88373 0.90158 1.22339 0.97266 1.01857 1.01330 1.86757 1.83384 1.38227 1.26173 1.21650 0.87717 1.02616 0.87346 0.93774 0.90835 0.93051 0.94461 0.93172 0.92703 0.91598 0.90517 0.90077 0.89995 0.92189 0.91250 0.91260 0.78362 0.90530 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.94 10.31 59.85 0.62 2.56 16 2 N -1.00 -21.59 3.23 -123.05 -0.40 -21.99 16 3 C 0.24 6.25 5.41 -5.19 -0.03 6.22 16 4 C -0.54 -14.46 8.94 -34.44 -0.31 -14.77 16 5 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 8 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 S 2.80 58.48 6.31 -107.50 -0.68 57.80 16 13 O -1.00 -21.02 16.54 -57.17 -0.95 -21.96 16 14 O -0.97 -23.34 16.27 -57.17 -0.93 -24.27 16 15 N -1.01 -18.12 3.76 -111.39 -0.42 -18.54 16 16 C 0.12 1.75 7.10 -2.50 -0.02 1.73 16 17 C -0.15 -1.72 6.25 -24.58 -0.15 -1.87 16 18 C 0.12 1.57 1.27 -88.79 -0.11 1.46 16 19 C -0.17 -1.78 8.85 37.16 0.33 -1.45 16 20 O -0.54 -7.79 13.09 -35.23 -0.46 -8.26 16 21 C 0.13 2.31 6.35 -3.07 -0.02 2.29 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 24 H 0.05 0.81 7.79 -51.93 -0.40 0.41 16 25 H 0.04 0.99 8.11 -51.93 -0.42 0.57 16 26 H 0.05 1.41 6.91 -51.93 -0.36 1.05 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 29 H 0.08 1.02 7.78 -51.93 -0.40 0.62 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.82 8.05 -51.93 -0.42 0.40 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.37 3.43 9.10 45.56 0.41 3.85 16 36 H 0.08 1.25 7.80 -51.93 -0.40 0.85 16 37 H 0.10 2.04 7.62 -51.93 -0.40 1.64 16 LS Contribution 319.46 15.07 4.81 4.81 Total: -1.00 -33.82 319.46 -7.98 -41.81 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.89 Total: 1.68 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 0.21 Total: -2.15 kcal Atomic # 7 Polarization: -65.71 SS G_CDS: -0.08 Total: -65.79 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -2.34 Total: -54.48 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 58.48 SS G_CDS: -0.68 Total: 57.80 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.82 -7.98 -41.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343102048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.281 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds