Wall clock time and date at job start Tue Mar 31 2020 01:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00167 * 2 1 4 4 C 1.50699 * 109.47059 * 275.00170 * 3 2 1 5 5 H 1.08001 * 120.00290 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00032 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99799 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00171 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47052 * 89.99762 * 8 6 4 10 10 H 1.48497 * 109.47027 * 209.99791 * 8 6 4 11 11 H 1.48498 * 109.47144 * 329.99939 * 8 6 4 12 12 S 1.65604 * 120.00296 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.39650 * 336.46299 * 12 2 1 14 14 O 1.42090 * 106.40369 * 203.54126 * 12 2 1 15 15 N 1.65600 * 107.21808 * 89.99936 * 12 2 1 16 16 C 1.47471 * 125.62907 * 270.02753 * 15 12 2 17 17 C 1.54906 * 104.81210 * 204.04788 * 16 15 12 18 18 C 1.55156 * 101.61451 * 323.04512 * 17 16 15 19 19 C 1.52999 * 110.71830 * 154.02508 * 18 17 16 20 20 O 1.42907 * 110.72012 * 277.11470 * 18 17 16 21 21 C 1.47017 * 125.65122 * 90.00167 * 15 12 2 22 22 H 1.08996 * 109.47193 * 270.00189 * 1 2 3 23 23 H 1.09005 * 109.47121 * 30.00054 * 1 2 3 24 24 H 1.08996 * 109.47089 * 150.00040 * 1 2 3 25 25 H 1.09002 * 109.46840 * 35.00163 * 3 2 1 26 26 H 1.09001 * 109.47509 * 155.00050 * 3 2 1 27 27 H 0.97004 * 119.99845 * 180.02562 * 7 6 4 28 28 H 1.09008 * 110.34870 * 85.22917 * 16 15 12 29 29 H 1.09001 * 110.40581 * 322.89953 * 16 15 12 30 30 H 1.09002 * 111.00655 * 204.94912 * 17 16 15 31 31 H 1.09002 * 111.00329 * 81.13838 * 17 16 15 32 32 H 1.08997 * 109.47604 * 61.45012 * 19 18 17 33 33 H 1.09001 * 109.47250 * 181.45068 * 19 18 17 34 34 H 1.09004 * 109.46922 * 301.45155 * 19 18 17 35 35 H 0.96700 * 113.99657 * 298.55132 * 20 18 17 36 36 H 1.08998 * 109.88206 * 59.57686 * 21 15 12 37 37 H 1.09004 * 110.01118 * 298.48779 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9289 1.1935 -2.2332 6 6 3.0007 2.9503 -1.6665 7 7 3.5035 3.6469 -0.6706 8 14 3.1797 3.5660 -3.4210 9 1 2.0195 4.4269 -3.7642 10 1 4.4333 4.3525 -3.5441 11 1 3.2286 2.4080 -4.3493 12 16 2.2931 -1.4341 0.0006 13 8 1.4113 -2.4062 0.5455 14 8 3.5759 -1.1565 0.5449 15 7 2.5382 -1.8593 -1.5810 16 6 1.6270 -2.6788 -2.4013 17 6 2.5282 -3.2912 -3.5025 18 6 3.5074 -2.1226 -3.7903 19 6 4.8357 -2.6512 -4.3353 20 8 2.9254 -1.1880 -4.7014 21 6 3.6996 -1.4820 -2.3996 22 1 -0.3633 0.0000 1.0276 23 1 -0.3634 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6502 2.0043 0.5895 26 1 3.1858 1.1177 0.4343 27 1 3.9670 4.4805 -0.8472 28 1 0.8537 -2.0539 -2.8481 29 1 1.1771 -3.4670 -1.7975 30 1 1.9462 -3.5408 -4.3897 31 1 3.0619 -4.1652 -3.1293 32 1 4.6604 -3.1749 -5.2750 33 1 5.5163 -1.8170 -4.5059 34 1 5.2770 -3.3383 -3.6133 35 1 2.7130 -1.5629 -5.5671 36 1 4.6141 -1.8584 -1.9413 37 1 3.7521 -0.3975 -2.4951 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343102048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:29 Heat of formation + Delta-G solvation = -149.217794 kcal Electronic energy + Delta-G solvation = -21664.704264 eV Core-core repulsion = 18374.800299 eV Total energy + Delta-G solvation = -3289.903965 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.25407 -38.37891 -37.23779 -36.95776 -36.39613 -34.49831 -32.17329 -30.52178 -29.67547 -27.09905 -26.79639 -24.23222 -23.37243 -21.45348 -20.02001 -18.95421 -18.66046 -18.25489 -17.68946 -17.08269 -16.55840 -16.36343 -15.58279 -15.25401 -14.95410 -14.80438 -14.15349 -14.07435 -13.98248 -13.95376 -13.86549 -13.45103 -13.32091 -13.16065 -13.03130 -12.93349 -12.67023 -12.50759 -12.43965 -12.39051 -12.23510 -11.93211 -11.75387 -11.50832 -10.81449 -10.59655 -10.02094 -9.77712 -8.18463 -6.31712 -0.38475 1.40678 1.42937 1.56270 1.92959 2.42631 2.53164 3.09949 3.13254 3.35653 3.62560 3.68776 3.96345 4.05668 4.34966 4.41192 4.57788 4.66462 4.71489 4.75648 4.82689 4.83168 4.99958 5.04864 5.05767 5.13960 5.20112 5.23183 5.31924 5.39345 5.50900 5.73489 5.91429 6.08029 6.80451 7.02535 7.38551 8.89620 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.010041 C = 0.006848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.899979 B = 2788.011719 C = 4087.787148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -1.005 6.005 3 C 0.258 3.742 4 C -0.536 4.536 5 H 0.067 0.933 6 C 0.012 3.988 7 N -0.929 5.929 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.261 1.261 12 S 2.813 3.187 13 O -0.998 6.998 14 O -1.013 7.013 15 N -1.014 6.014 16 C 0.109 3.891 17 C -0.139 4.139 18 C 0.122 3.878 19 C -0.164 4.164 20 O -0.569 6.569 21 C 0.121 3.879 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.021 0.979 26 H 0.017 0.983 27 H 0.266 0.734 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.393 0.607 36 H 0.078 0.922 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.987 -14.500 -9.978 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.846 5.846 3 C 0.135 3.865 4 C -0.575 4.575 5 H 0.085 0.915 6 C -0.188 4.188 7 N -0.569 5.569 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.185 1.185 12 S 2.823 3.177 13 O -0.983 6.983 14 O -0.997 6.997 15 N -0.854 5.854 16 C -0.016 4.016 17 C -0.177 4.177 18 C 0.080 3.920 19 C -0.222 4.222 20 O -0.378 6.378 21 C -0.004 4.004 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.039 0.961 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.243 0.757 36 H 0.096 0.904 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.579 -14.396 -8.537 16.934 hybrid contribution 0.074 0.923 -1.055 1.404 sum -2.505 -13.473 -9.593 16.728 Atomic orbital electron populations 1.21440 0.78026 1.03212 1.01915 1.57635 1.15749 1.22273 1.88944 1.18772 0.90787 0.80193 0.96787 1.21760 1.35822 1.06654 0.93282 0.91524 1.25793 0.94893 0.96844 1.01236 1.70069 1.37980 1.15699 1.33118 0.85542 0.77473 0.78555 0.80153 1.19864 1.21099 1.18532 1.00712 0.72132 0.72202 0.72650 1.93512 1.67235 1.60239 1.77290 1.93511 1.42799 1.85712 1.77715 1.58824 1.31210 1.65591 1.29823 1.22248 0.92745 0.93613 0.92947 1.23467 0.97423 0.97427 0.99420 1.22128 0.93853 0.88297 0.87731 1.22306 0.95264 1.01685 1.02973 1.86689 1.83685 1.39601 1.27776 1.21779 0.87765 1.00383 0.90497 0.92329 0.90911 0.90571 0.96053 0.96477 0.92558 0.91541 0.89425 0.86468 0.88204 0.88965 0.92630 0.90400 0.75718 0.90365 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.52 10.31 127.77 1.32 4.84 16 2 N -1.00 -44.27 3.23 -543.22 -1.75 -46.03 16 3 C 0.26 13.79 5.41 85.63 0.46 14.26 16 4 C -0.54 -29.51 8.94 25.60 0.23 -29.28 16 5 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 6 C 0.01 0.66 5.46 84.65 0.46 1.12 16 7 N -0.93 -55.51 13.29 21.45 0.28 -55.23 16 8 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 12 S 2.81 118.53 6.31 -56.49 -0.36 118.17 16 13 O -1.00 -41.24 16.54 -128.00 -2.12 -43.36 16 14 O -1.01 -50.35 16.27 -128.00 -2.08 -52.43 16 15 N -1.01 -35.62 3.76 -506.33 -1.90 -37.52 16 16 C 0.11 2.82 7.10 86.85 0.62 3.44 16 17 C -0.14 -2.52 6.25 31.98 0.20 -2.32 16 18 C 0.12 2.95 1.27 -9.61 -0.01 2.93 16 19 C -0.16 -2.94 8.85 71.98 0.64 -2.31 16 20 O -0.57 -15.03 13.09 -148.98 -1.95 -16.98 16 21 C 0.12 4.23 6.35 86.73 0.55 4.78 16 22 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.07 2.57 8.07 -2.38 -0.02 2.55 16 24 H 0.08 2.29 7.79 -2.39 -0.02 2.27 16 25 H 0.02 1.19 8.11 -2.39 -0.02 1.17 16 26 H 0.02 1.02 6.91 -2.39 -0.02 1.01 16 27 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.09 2.08 7.78 -2.39 -0.02 2.06 16 30 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.51 8.05 -2.39 -0.02 1.50 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.26 8.10 -2.38 -0.02 1.24 16 35 H 0.39 5.89 9.10 -74.06 -0.67 5.22 16 36 H 0.08 2.61 7.80 -2.39 -0.02 2.59 16 37 H 0.05 2.30 7.62 -2.38 -0.02 2.28 16 Total: -1.00 -74.75 319.46 -3.00 -77.74 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.39 Total: 11.95 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 4.46 Total: -2.54 kcal Atomic # 7 Polarization: -135.41 SS G_CDS: -3.37 Total: -138.78 kcal Atomic # 8 Polarization: -106.62 SS G_CDS: -6.15 Total: -112.77 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 118.53 SS G_CDS: -0.36 Total: 118.17 kcal Total: -74.75 -3.00 -77.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343102048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.473 kcal (2) G-P(sol) polarization free energy of solvation -74.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds