Wall clock time and date at job start Mon Mar 30 2020 23:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 119.99827 * 2 1 4 4 H 1.48507 * 109.46804 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47120 * 299.99936 * 3 2 1 6 6 H 1.48502 * 109.47221 * 60.00357 * 3 2 1 7 7 C 1.38949 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00240 * 179.97438 * 7 2 1 9 9 N 1.37105 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99845 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99952 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99636 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.46960 * 179.97438 * 12 10 9 14 14 C 1.34784 * 120.00183 * 179.97438 * 13 12 10 15 15 O 1.21280 * 119.99622 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00106 * 179.97438 * 14 13 12 17 17 C 1.50698 * 109.47224 * 179.97438 * 16 14 13 18 18 C 1.38269 * 119.94432 * 89.99865 * 17 16 14 19 19 C 1.38137 * 120.06013 * 180.02562 * 18 17 16 20 20 C 1.38737 * 119.94162 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05545 * 180.02562 * 20 19 18 22 22 C 1.38734 * 119.88732 * 0.27760 * 20 19 18 23 23 C 1.38140 * 119.94299 * 359.46795 * 22 20 19 24 24 H 0.96994 * 120.00258 * 359.97438 * 1 2 3 25 25 H 0.96994 * 120.00009 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.47648 * 59.99679 * 12 10 9 27 27 H 1.09005 * 109.47096 * 299.99037 * 12 10 9 28 28 H 0.97000 * 120.00465 * 359.97438 * 13 12 10 29 29 H 1.08997 * 109.47005 * 59.99785 * 16 14 13 30 30 H 1.09005 * 109.46704 * 299.99776 * 16 14 13 31 31 H 1.08008 * 119.96973 * 0.02562 * 18 17 16 32 32 H 1.07997 * 120.03660 * 179.97438 * 19 18 17 33 33 H 0.96700 * 114.00170 * 90.00174 * 21 20 19 34 34 H 1.07999 * 120.02623 * 179.72382 * 22 20 19 35 35 H 1.08003 * 119.97390 * 180.23377 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1958 -5.9764 -0.0016 14 6 1.7466 -7.2472 -0.0017 15 8 0.5542 -7.4688 -0.0008 16 6 2.7259 -8.3926 -0.0028 17 6 1.9725 -9.6977 -0.0020 18 6 1.6261 -10.2954 -1.1997 19 6 0.9350 -11.4915 -1.2017 20 6 0.5889 -12.0933 -0.0006 21 8 -0.0905 -13.2702 0.0001 22 6 0.9331 -11.4889 1.1999 23 6 1.6288 -10.2955 1.1964 24 1 -0.4850 0.8400 0.0004 25 1 0.3534 -2.3907 -0.0005 26 1 0.6175 -4.9205 -0.8913 27 1 0.6169 -4.9209 0.8887 28 1 3.1495 -5.7992 -0.0019 29 1 3.3533 -8.3351 0.8867 30 1 3.3519 -8.3345 -0.8933 31 1 1.8961 -9.8267 -2.1346 32 1 0.6642 -11.9578 -2.1375 33 1 0.4779 -14.0525 -0.0005 34 1 0.6609 -11.9532 2.1362 35 1 1.9002 -9.8265 2.1307 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343512690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:17 Heat of formation + Delta-G solvation = -98.220263 kcal Electronic energy + Delta-G solvation = -20007.245977 eV Core-core repulsion = 16584.109480 eV Total energy + Delta-G solvation = -3423.136497 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.20168 -39.30358 -38.15369 -36.91748 -34.45797 -33.67337 -32.19839 -31.39198 -31.14766 -28.36601 -26.44225 -24.41066 -22.97945 -21.93857 -20.15372 -19.58093 -18.60822 -18.13895 -17.15832 -16.29431 -16.14589 -15.59785 -15.44283 -15.19284 -15.01783 -14.47734 -14.02868 -13.98502 -13.83784 -13.58052 -13.35173 -12.60992 -12.25833 -12.14410 -12.01646 -11.75248 -11.64127 -11.61776 -11.15799 -10.63595 -10.42636 -10.34573 -9.78186 -9.66925 -9.11982 -8.81393 -8.68285 -8.60582 -8.12469 -6.53538 -3.95721 1.04023 1.22529 2.80650 3.08774 3.19970 3.23391 3.29095 3.64016 3.71639 4.01250 4.10351 4.54980 4.65879 4.82372 4.85865 5.09180 5.11078 5.15347 5.20593 5.37855 5.49489 5.68787 5.85183 5.89914 5.94418 6.04999 6.11819 6.25792 6.42991 6.64255 6.66289 7.43536 7.44218 7.78639 7.90093 8.41095 8.45256 9.02494 9.37107 9.84688 10.63413 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.056952 B = 0.002585 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.526509 B =10827.686520 C =11008.419310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.109 3.891 13 N -0.708 5.708 14 C 0.511 3.489 15 O -0.541 6.541 16 C -0.102 4.102 17 C -0.068 4.068 18 C -0.089 4.089 19 C -0.144 4.144 20 C 0.098 3.902 21 O -0.501 6.501 22 C -0.144 4.144 23 C -0.089 4.089 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.411 0.589 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.387 0.613 34 H 0.127 0.873 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -21.038 -0.004 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C -0.019 4.019 13 N -0.363 5.363 14 C 0.296 3.704 15 O -0.418 6.418 16 C -0.142 4.142 17 C -0.069 4.069 18 C -0.107 4.107 19 C -0.163 4.163 20 C 0.054 3.946 21 O -0.310 6.310 22 C -0.162 4.162 23 C -0.107 4.107 24 H 0.084 0.916 25 H 0.230 0.770 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.249 0.751 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.242 0.758 34 H 0.145 0.855 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.988 -20.621 -0.004 20.836 hybrid contribution 0.481 0.719 0.000 0.865 sum 3.469 -19.902 -0.004 20.202 Atomic orbital electron populations 1.69619 1.06032 1.28467 1.49324 1.25338 0.95672 0.99979 0.96782 0.85754 0.79672 0.80789 0.77847 1.19120 1.20598 1.20592 1.19781 0.93484 0.81977 1.48185 0.87606 1.41817 1.09509 1.04516 1.62555 1.19750 0.88288 0.85005 0.85600 1.90492 1.13706 1.86845 1.57435 1.20946 0.91920 0.85802 1.03218 1.45726 1.11581 1.04614 1.74372 1.20433 0.89653 0.83587 0.76719 1.90724 1.16716 1.84788 1.49567 1.20656 0.97550 0.90371 1.05649 1.19344 0.99181 0.94898 0.93458 1.20892 0.97384 0.94655 0.97745 1.21351 0.99827 0.97292 0.97780 1.18475 0.95234 0.88406 0.92456 1.84844 1.35422 1.14210 1.96561 1.21347 0.99770 0.97325 0.97786 1.20891 0.97363 0.94693 0.97736 0.91606 0.77027 0.89897 0.89892 0.75115 0.87720 0.87715 0.85613 0.85494 0.75765 0.85493 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.85 13.05 55.50 0.72 -23.13 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.56 5.29 -10.96 -0.06 -13.62 16 10 C 0.43 9.70 7.85 -10.99 -0.09 9.61 16 11 O -0.60 -15.06 15.24 5.55 0.08 -14.98 16 12 C 0.11 1.98 6.15 -5.20 -0.03 1.95 16 13 N -0.71 -11.28 5.53 -61.47 -0.34 -11.62 16 14 C 0.51 7.64 7.82 -10.98 -0.09 7.56 16 15 O -0.54 -10.09 16.03 5.56 0.09 -10.01 16 16 C -0.10 -1.07 5.83 -29.04 -0.17 -1.24 16 17 C -0.07 -0.78 4.37 -104.60 -0.46 -1.24 16 18 C -0.09 -0.97 9.69 -39.61 -0.38 -1.36 16 19 C -0.14 -1.52 9.99 -39.43 -0.39 -1.92 16 20 C 0.10 1.06 6.71 -39.21 -0.26 0.80 16 21 O -0.50 -4.69 13.50 -19.41 -0.26 -4.95 16 22 C -0.14 -1.52 9.99 -39.43 -0.39 -1.92 16 23 C -0.09 -0.97 9.69 -39.61 -0.38 -1.36 16 24 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.40 9.43 7.90 -40.82 -0.32 9.11 16 26 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 28 H 0.41 6.28 7.44 -40.82 -0.30 5.98 16 29 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 30 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 31 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.39 1.56 9.06 45.56 0.41 1.97 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -33.67 317.35 -5.99 -39.66 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -3.10 Total: 15.38 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.89 Total: 3.07 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.33 Total: -48.36 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.09 Total: -29.93 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.67 -5.99 -39.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343512690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.559 kcal (2) G-P(sol) polarization free energy of solvation -33.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds