Wall clock time and date at job start Mon Mar 30 2020 23:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 119.99827 * 2 1 4 4 H 1.48507 * 109.46804 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47120 * 299.99936 * 3 2 1 6 6 H 1.48502 * 109.47221 * 60.00357 * 3 2 1 7 7 C 1.38949 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00240 * 179.97438 * 7 2 1 9 9 N 1.37105 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99845 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99952 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99636 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.46960 * 179.97438 * 12 10 9 14 14 C 1.34784 * 120.00183 * 179.97438 * 13 12 10 15 15 O 1.21280 * 119.99622 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00106 * 179.97438 * 14 13 12 17 17 C 1.50698 * 109.47224 * 179.97438 * 16 14 13 18 18 C 1.38269 * 119.94432 * 89.99865 * 17 16 14 19 19 C 1.38137 * 120.06013 * 180.02562 * 18 17 16 20 20 C 1.38737 * 119.94162 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05545 * 180.02562 * 20 19 18 22 22 C 1.38734 * 119.88732 * 0.27760 * 20 19 18 23 23 C 1.38140 * 119.94299 * 359.46795 * 22 20 19 24 24 H 0.96994 * 120.00258 * 359.97438 * 1 2 3 25 25 H 0.96994 * 120.00009 * 0.02562 * 9 7 2 26 26 H 1.08997 * 109.47648 * 59.99679 * 12 10 9 27 27 H 1.09005 * 109.47096 * 299.99037 * 12 10 9 28 28 H 0.97000 * 120.00465 * 359.97438 * 13 12 10 29 29 H 1.08997 * 109.47005 * 59.99785 * 16 14 13 30 30 H 1.09005 * 109.46704 * 299.99776 * 16 14 13 31 31 H 1.08008 * 119.96973 * 0.02562 * 18 17 16 32 32 H 1.07997 * 120.03660 * 179.97438 * 19 18 17 33 33 H 0.96700 * 114.00170 * 90.00174 * 21 20 19 34 34 H 1.07999 * 120.02623 * 179.72382 * 22 20 19 35 35 H 1.08003 * 119.97390 * 180.23377 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1958 -5.9764 -0.0016 14 6 1.7466 -7.2472 -0.0017 15 8 0.5542 -7.4688 -0.0008 16 6 2.7259 -8.3926 -0.0028 17 6 1.9725 -9.6977 -0.0020 18 6 1.6261 -10.2954 -1.1997 19 6 0.9350 -11.4915 -1.2017 20 6 0.5889 -12.0933 -0.0006 21 8 -0.0905 -13.2702 0.0001 22 6 0.9331 -11.4889 1.1999 23 6 1.6288 -10.2955 1.1964 24 1 -0.4850 0.8400 0.0004 25 1 0.3534 -2.3907 -0.0005 26 1 0.6175 -4.9205 -0.8913 27 1 0.6169 -4.9209 0.8887 28 1 3.1495 -5.7992 -0.0019 29 1 3.3533 -8.3351 0.8867 30 1 3.3519 -8.3345 -0.8933 31 1 1.8961 -9.8267 -2.1346 32 1 0.6642 -11.9578 -2.1375 33 1 0.4779 -14.0525 -0.0005 34 1 0.6609 -11.9532 2.1362 35 1 1.9002 -9.8265 2.1307 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343512690.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:17 Heat of formation + Delta-G solvation = -124.571640 kcal Electronic energy + Delta-G solvation = -20008.388658 eV Core-core repulsion = 16584.109480 eV Total energy + Delta-G solvation = -3424.279179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.23052 -40.48262 -39.76499 -37.71747 -36.23895 -35.24492 -33.40473 -33.03569 -31.91644 -29.70763 -27.66716 -26.15740 -23.75464 -22.84591 -21.38122 -21.29353 -20.06866 -19.33494 -18.53211 -17.41914 -17.13881 -17.07745 -16.56631 -16.47911 -16.26748 -16.01497 -15.56092 -15.45607 -14.80223 -14.64798 -14.36103 -13.92712 -13.78288 -13.55676 -13.21311 -12.99920 -12.91470 -12.53094 -12.48692 -12.44802 -12.11092 -11.58259 -11.36324 -11.03044 -10.56306 -10.18400 -10.08060 -9.90434 -9.42913 -8.51686 -6.01988 0.24783 0.43847 1.34927 1.42916 1.56996 1.63982 1.90794 2.06644 2.32145 2.76163 3.14456 3.15600 3.32503 3.71486 3.91201 4.00066 4.09943 4.25497 4.35733 4.44812 4.44957 4.46435 4.65247 4.74693 4.98152 5.09753 5.30426 5.34075 5.38534 5.47963 5.63399 5.91574 5.92793 6.45915 6.57631 6.88435 7.03045 7.22272 7.44288 7.93646 8.65529 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.056952 B = 0.002585 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.526509 B =10827.686520 C =11008.419310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.562 5.562 10 C 0.434 3.566 11 O -0.623 6.623 12 C 0.121 3.879 13 N -0.708 5.708 14 C 0.513 3.487 15 O -0.579 6.579 16 C -0.093 4.093 17 C -0.086 4.086 18 C -0.098 4.098 19 C -0.156 4.156 20 C 0.094 3.906 21 O -0.512 6.512 22 C -0.156 4.156 23 C -0.098 4.098 24 H 0.280 0.720 25 H 0.398 0.602 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.416 0.584 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.410 0.590 34 H 0.140 0.860 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 -21.623 -0.006 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.213 4.213 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.197 5.197 10 C 0.221 3.779 11 O -0.511 6.511 12 C -0.007 4.007 13 N -0.363 5.363 14 C 0.301 3.699 15 O -0.459 6.459 16 C -0.132 4.132 17 C -0.087 4.087 18 C -0.117 4.117 19 C -0.174 4.174 20 C 0.049 3.951 21 O -0.325 6.325 22 C -0.174 4.174 23 C -0.117 4.117 24 H 0.089 0.911 25 H 0.232 0.768 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.254 0.746 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.268 0.732 34 H 0.158 0.842 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.588 -21.245 -0.006 21.546 hybrid contribution 0.277 0.768 0.000 0.816 sum 3.865 -20.478 -0.006 20.839 Atomic orbital electron populations 1.69685 1.07059 1.29579 1.49451 1.26149 0.96536 1.02766 0.95831 0.84803 0.78172 0.76678 0.78277 1.19308 1.19686 1.19674 1.19780 0.92974 0.83511 1.50219 0.89473 1.41882 1.09595 1.04717 1.63498 1.20435 0.88137 0.85900 0.83442 1.90469 1.15072 1.87550 1.57962 1.20738 0.91876 0.84162 1.03940 1.45755 1.11344 1.04487 1.74692 1.21198 0.89885 0.83812 0.75019 1.90710 1.18710 1.85209 1.51259 1.20695 0.96609 0.87723 1.08160 1.19521 0.99967 0.95398 0.93778 1.21142 0.97341 0.94890 0.98280 1.21579 0.99942 0.97434 0.98452 1.18635 0.94842 0.88938 0.92643 1.84779 1.36382 1.14807 1.96521 1.21576 0.99893 0.97472 0.98460 1.21140 0.97319 0.94923 0.98269 0.91089 0.76781 0.89136 0.89131 0.74577 0.85143 0.85137 0.84455 0.84182 0.73150 0.84190 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.76 13.05 21.66 0.28 -48.47 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 1.00 41.51 29.55 68.60 2.03 43.53 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.34 -18.36 9.68 84.04 0.81 -17.54 16 8 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -28.03 5.29 -306.98 -1.62 -29.65 16 10 C 0.43 19.67 7.85 87.65 0.69 20.36 16 11 O -0.62 -31.38 15.24 -3.07 -0.05 -31.43 16 12 C 0.12 4.32 6.15 85.63 0.53 4.85 16 13 N -0.71 -21.60 5.53 -466.79 -2.58 -24.18 16 14 C 0.51 14.55 7.82 87.66 0.69 15.23 16 15 O -0.58 -21.09 16.03 -3.03 -0.05 -21.13 16 16 C -0.09 -1.72 5.83 29.10 0.17 -1.55 16 17 C -0.09 -1.82 4.37 -19.85 -0.09 -1.91 16 18 C -0.10 -2.02 9.69 22.25 0.22 -1.81 16 19 C -0.16 -3.11 9.99 22.37 0.22 -2.88 16 20 C 0.09 1.90 6.71 22.51 0.15 2.05 16 21 O -0.51 -8.84 13.50 -92.38 -1.25 -10.09 16 22 C -0.16 -3.11 9.99 22.37 0.22 -2.89 16 23 C -0.10 -2.02 9.69 22.25 0.22 -1.81 16 24 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 25 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 26 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 27 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 28 H 0.42 12.10 7.44 -92.71 -0.69 11.41 16 29 H 0.13 1.76 8.08 -2.39 -0.02 1.74 16 30 H 0.13 1.76 8.09 -2.38 -0.02 1.75 16 31 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.41 2.62 9.06 -74.06 -0.67 1.95 16 34 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -71.55 317.35 0.12 -71.43 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: -0.93 Total: 38.05 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 4.29 Total: 11.94 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -3.92 Total: -102.30 kcal Atomic # 8 Polarization: -61.31 SS G_CDS: -1.34 Total: -62.65 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -71.55 0.12 -71.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343512690.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.145 kcal (2) G-P(sol) polarization free energy of solvation -71.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds