Wall clock time and date at job start Tue Mar 31 2020 00:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38547 * 119.84969 * 2 1 4 4 C 1.38054 * 120.39089 * 180.30484 * 3 2 1 5 5 C 1.38711 * 120.08011 * 359.43991 * 4 3 2 6 6 O 1.35658 * 120.14749 * 180.30076 * 5 4 3 7 7 C 1.40135 * 119.70244 * 0.27732 * 5 4 3 8 8 C 1.47539 * 120.19056 * 180.02562 * 7 5 4 9 9 O 1.21588 * 120.00126 * 0.02562 * 8 7 5 10 10 N 1.34773 * 119.99629 * 180.02562 * 8 7 5 11 11 C 1.46503 * 119.99951 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47292 * 179.97438 * 11 10 8 13 13 O 1.21294 * 120.00125 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99979 * 179.97438 * 12 11 10 15 15 C 1.37099 * 119.99991 * 179.97438 * 14 12 11 16 16 H 1.08005 * 120.00109 * 0.02562 * 15 14 12 17 17 C 1.38950 * 120.00095 * 180.02562 * 15 14 12 18 18 N 1.31414 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00264 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46567 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47049 * 119.99929 * 19 17 15 22 22 H 1.48499 * 109.46965 * 240.00434 * 19 17 15 23 23 C 1.37792 * 119.85090 * 179.74339 * 2 1 3 24 24 H 1.09001 * 109.47266 * 270.25360 * 1 2 3 25 25 H 1.08999 * 109.47091 * 30.25388 * 1 2 3 26 26 H 1.09000 * 109.47090 * 150.25344 * 1 2 3 27 27 H 1.08001 * 119.80549 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.96228 * 179.72404 * 4 3 2 29 29 H 0.96702 * 113.99905 * 90.00282 * 6 5 4 30 30 H 0.97003 * 120.00431 * 0.02562 * 10 8 7 31 31 H 1.08998 * 109.47277 * 300.00619 * 11 10 8 32 32 H 1.08999 * 109.46842 * 60.00322 * 11 10 8 33 33 H 0.97000 * 120.00202 * 0.02562 * 14 12 11 34 34 H 0.97001 * 119.99870 * 180.02562 * 18 17 15 35 35 H 1.07997 * 120.04449 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1965 1.2017 0.0000 4 6 3.5770 1.2147 -0.0063 5 6 4.2836 0.0211 -0.0010 6 8 5.6401 0.0323 -0.0011 7 6 3.5898 -1.1965 0.0049 8 6 4.3305 -2.4725 0.0112 9 8 5.5464 -2.4696 0.0116 10 7 3.6593 -3.6412 0.0163 11 6 4.3948 -4.9082 0.0220 12 6 3.4182 -6.0559 0.0277 13 8 2.2251 -5.8370 0.0266 14 7 3.8704 -7.3255 0.0329 15 6 2.9819 -8.3696 0.0386 16 1 1.9196 -8.1748 0.0385 17 6 3.4481 -9.6786 0.0445 18 7 4.7407 -9.9157 0.0452 19 14 2.2376 -11.1013 0.0516 20 1 0.8506 -10.5708 0.0490 21 1 2.4495 -11.9375 -1.1571 22 1 2.4504 -11.9262 1.2679 23 6 2.1928 -1.1951 0.0054 24 1 -0.3634 0.0045 1.0277 25 1 -0.3633 0.8877 -0.5178 26 1 -0.3633 -0.8923 -0.5099 27 1 1.6509 2.1337 0.0004 28 1 4.1075 2.1554 -0.0108 29 1 6.0334 0.0395 0.8823 30 1 2.6893 -3.6435 0.0155 31 1 5.0217 -4.9684 -0.8677 32 1 5.0215 -4.9605 0.9122 33 1 4.8245 -7.5006 0.0334 34 1 5.0662 -10.8294 0.0489 35 1 1.6511 -2.1294 0.0091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343515495.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:17 Heat of formation + Delta-G solvation = -96.197475 kcal Electronic energy + Delta-G solvation = -20541.820546 eV Core-core repulsion = 17118.771763 eV Total energy + Delta-G solvation = -3423.048783 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -40.48343 -38.87808 -37.90751 -37.05033 -34.45096 -33.69727 -32.03039 -31.59045 -31.30178 -27.65881 -26.50861 -24.77711 -23.66579 -21.86737 -20.15998 -19.61569 -18.59299 -18.05674 -17.33391 -16.28583 -15.80623 -15.50966 -15.15868 -15.00651 -14.81728 -14.36251 -14.21563 -13.89081 -13.71051 -13.64159 -13.20512 -12.81374 -12.23233 -12.10519 -12.01692 -11.80721 -11.66124 -11.63961 -11.15390 -10.80034 -10.42007 -10.33758 -9.66342 -9.65459 -9.24261 -8.81103 -8.65472 -8.59625 -8.11750 -6.52928 -3.94997 0.68197 1.05023 2.88247 3.09281 3.21063 3.26292 3.34379 3.63774 3.73406 4.09949 4.11636 4.56341 4.60146 4.71289 4.85661 5.04244 5.15721 5.17126 5.33505 5.41370 5.49632 5.67444 5.82529 5.89121 5.94579 5.95160 6.05219 6.14671 6.29668 6.54912 6.65428 7.44861 7.62432 7.79200 7.90608 8.41112 8.45453 9.03057 9.37612 9.85236 10.63994 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029215 B = 0.003430 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.179484 B = 8161.049382 C = 9096.224351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.105 4.105 3 C -0.082 4.082 4 C -0.155 4.155 5 C 0.160 3.840 6 O -0.478 6.478 7 C -0.155 4.155 8 C 0.554 3.446 9 O -0.531 6.531 10 N -0.704 5.704 11 C 0.110 3.890 12 C 0.428 3.572 13 O -0.598 6.598 14 N -0.548 5.548 15 C -0.305 4.305 16 H 0.106 0.894 17 C 0.026 3.974 18 N -0.894 5.894 19 Si 0.933 3.067 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.070 4.070 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.394 0.606 30 H 0.409 0.591 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.396 0.604 34 H 0.274 0.726 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 19.517 1.614 19.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.105 4.105 3 C -0.100 4.100 4 C -0.174 4.174 5 C 0.114 3.886 6 O -0.288 6.288 7 C -0.159 4.159 8 C 0.340 3.660 9 O -0.409 6.409 10 N -0.359 5.359 11 C -0.018 4.018 12 C 0.214 3.786 13 O -0.485 6.485 14 N -0.183 5.183 15 C -0.434 4.434 16 H 0.124 0.876 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.089 4.089 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.147 0.853 28 H 0.152 0.848 29 H 0.252 0.748 30 H 0.248 0.752 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.488 19.406 1.010 19.743 hybrid contribution -0.241 -0.955 0.473 1.092 sum -3.729 18.451 1.483 18.883 Atomic orbital electron populations 1.20805 0.90480 1.03193 1.02658 1.19871 0.96643 0.92657 1.01308 1.21078 0.93530 0.97800 0.97632 1.21399 0.94483 0.97700 1.03775 1.18471 0.83683 0.90607 0.95861 1.84749 1.14666 1.96057 1.33370 1.20438 0.93970 0.93643 1.07805 1.17999 0.87269 0.83316 0.77386 1.90787 1.12962 1.87476 1.49672 1.45640 1.11541 1.04591 1.74111 1.20962 0.94445 0.83006 1.03375 1.19732 0.89102 0.84174 0.85636 1.90487 1.16400 1.84156 1.57469 1.41801 1.10026 1.03951 1.62514 1.19786 0.91480 0.83994 1.48185 0.87599 1.25336 0.96688 0.98942 0.96768 1.69625 1.12465 1.22012 1.49310 0.85753 0.80235 0.80233 0.77840 1.19119 1.20597 1.20598 1.21283 0.92419 0.98670 0.96495 0.90924 0.91417 0.91005 0.85290 0.84816 0.74849 0.75199 0.89692 0.89720 0.77004 0.91615 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.00 36.00 0.36 -0.50 16 2 C -0.10 -1.04 5.87 -104.67 -0.61 -1.65 16 3 C -0.08 -0.73 9.68 -39.53 -0.38 -1.11 16 4 C -0.16 -1.54 9.98 -39.47 -0.39 -1.94 16 5 C 0.16 2.06 6.72 -38.70 -0.26 1.80 16 6 O -0.48 -6.29 11.58 -40.55 -0.47 -6.76 16 7 C -0.15 -2.19 5.89 -104.85 -0.62 -2.81 16 8 C 0.55 9.46 7.76 -12.47 -0.10 9.36 16 9 O -0.53 -10.36 15.16 -16.59 -0.25 -10.61 16 10 N -0.70 -12.23 5.48 -62.53 -0.34 -12.58 16 11 C 0.11 2.06 6.15 -5.19 -0.03 2.03 16 12 C 0.43 9.85 7.85 -10.99 -0.09 9.76 16 13 O -0.60 -15.24 15.24 5.55 0.08 -15.16 16 14 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 15 C -0.31 -8.27 9.68 -14.93 -0.14 -8.42 16 16 H 0.11 2.99 7.16 -52.48 -0.38 2.61 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 18 N -0.89 -23.85 13.05 55.50 0.72 -23.13 16 19 Si 0.93 20.46 29.55 -169.99 -5.02 15.43 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 C -0.07 -0.84 9.18 -39.20 -0.36 -1.20 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 26 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 28 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 29 H 0.39 3.61 9.06 45.56 0.41 4.02 16 30 H 0.41 6.89 5.47 -40.82 -0.22 6.66 16 31 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.40 9.46 7.90 -40.82 -0.32 9.14 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.14 1.56 6.40 -52.49 -0.34 1.22 16 LS Contribution 311.94 15.07 4.70 4.70 Total: -1.00 -32.76 311.94 -6.29 -39.05 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -2.93 Total: 16.82 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -2.72 Total: 5.89 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: 0.32 Total: -49.37 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.64 Total: -32.53 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.76 -6.29 -39.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343515495.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.143 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds