Wall clock time and date at job start Tue Mar 31 2020 00:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38547 * 119.84969 * 2 1 4 4 C 1.38054 * 120.39089 * 180.30484 * 3 2 1 5 5 C 1.38711 * 120.08011 * 359.43991 * 4 3 2 6 6 O 1.35658 * 120.14749 * 180.30076 * 5 4 3 7 7 C 1.40135 * 119.70244 * 0.27732 * 5 4 3 8 8 C 1.47539 * 120.19056 * 180.02562 * 7 5 4 9 9 O 1.21588 * 120.00126 * 0.02562 * 8 7 5 10 10 N 1.34773 * 119.99629 * 180.02562 * 8 7 5 11 11 C 1.46503 * 119.99951 * 179.97438 * 10 8 7 12 12 C 1.50694 * 109.47292 * 179.97438 * 11 10 8 13 13 O 1.21294 * 120.00125 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99979 * 179.97438 * 12 11 10 15 15 C 1.37099 * 119.99991 * 179.97438 * 14 12 11 16 16 H 1.08005 * 120.00109 * 0.02562 * 15 14 12 17 17 C 1.38950 * 120.00095 * 180.02562 * 15 14 12 18 18 N 1.31414 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00264 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46567 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47049 * 119.99929 * 19 17 15 22 22 H 1.48499 * 109.46965 * 240.00434 * 19 17 15 23 23 C 1.37792 * 119.85090 * 179.74339 * 2 1 3 24 24 H 1.09001 * 109.47266 * 270.25360 * 1 2 3 25 25 H 1.08999 * 109.47091 * 30.25388 * 1 2 3 26 26 H 1.09000 * 109.47090 * 150.25344 * 1 2 3 27 27 H 1.08001 * 119.80549 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.96228 * 179.72404 * 4 3 2 29 29 H 0.96702 * 113.99905 * 90.00282 * 6 5 4 30 30 H 0.97003 * 120.00431 * 0.02562 * 10 8 7 31 31 H 1.08998 * 109.47277 * 300.00619 * 11 10 8 32 32 H 1.08999 * 109.46842 * 60.00322 * 11 10 8 33 33 H 0.97000 * 120.00202 * 0.02562 * 14 12 11 34 34 H 0.97001 * 119.99870 * 180.02562 * 18 17 15 35 35 H 1.07997 * 120.04449 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1965 1.2017 0.0000 4 6 3.5770 1.2147 -0.0063 5 6 4.2836 0.0211 -0.0010 6 8 5.6401 0.0323 -0.0011 7 6 3.5898 -1.1965 0.0049 8 6 4.3305 -2.4725 0.0112 9 8 5.5464 -2.4696 0.0116 10 7 3.6593 -3.6412 0.0163 11 6 4.3948 -4.9082 0.0220 12 6 3.4182 -6.0559 0.0277 13 8 2.2251 -5.8370 0.0266 14 7 3.8704 -7.3255 0.0329 15 6 2.9819 -8.3696 0.0386 16 1 1.9196 -8.1748 0.0385 17 6 3.4481 -9.6786 0.0445 18 7 4.7407 -9.9157 0.0452 19 14 2.2376 -11.1013 0.0516 20 1 0.8506 -10.5708 0.0490 21 1 2.4495 -11.9375 -1.1571 22 1 2.4504 -11.9262 1.2679 23 6 2.1928 -1.1951 0.0054 24 1 -0.3634 0.0045 1.0277 25 1 -0.3633 0.8877 -0.5178 26 1 -0.3633 -0.8923 -0.5099 27 1 1.6509 2.1337 0.0004 28 1 4.1075 2.1554 -0.0108 29 1 6.0334 0.0395 0.8823 30 1 2.6893 -3.6435 0.0155 31 1 5.0217 -4.9684 -0.8677 32 1 5.0215 -4.9605 0.9122 33 1 4.8245 -7.5006 0.0334 34 1 5.0662 -10.8294 0.0489 35 1 1.6511 -2.1294 0.0091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343515495.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:14 Heat of formation + Delta-G solvation = -120.468998 kcal Electronic energy + Delta-G solvation = -20542.873038 eV Core-core repulsion = 17118.771763 eV Total energy + Delta-G solvation = -3424.101275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.58812 -40.40324 -39.41271 -37.95577 -36.26589 -35.33471 -33.42391 -32.84723 -32.40266 -29.24347 -27.24598 -26.58418 -24.76653 -22.80005 -21.45892 -21.32403 -20.13525 -19.51278 -18.57935 -17.45249 -17.32937 -16.86479 -16.53358 -16.34774 -16.25529 -15.81438 -15.46741 -15.43285 -14.85414 -14.56122 -14.37875 -13.94258 -13.63924 -13.56960 -13.49965 -12.93019 -12.86082 -12.58180 -12.46316 -12.44706 -12.11543 -11.77548 -11.59896 -10.91962 -10.59555 -10.33379 -10.12264 -10.01661 -9.45469 -8.52829 -6.03314 -0.25380 0.22782 1.34032 1.42361 1.56552 1.76985 1.88330 1.95018 2.30207 2.67366 3.07421 3.14235 3.25652 3.59698 3.79294 3.93862 4.17039 4.30316 4.31964 4.37809 4.38398 4.60895 4.77926 4.88914 4.89587 5.12686 5.19440 5.27197 5.28562 5.36996 5.53005 5.80100 5.89557 6.40916 6.47269 6.81099 7.01100 7.07989 7.41167 7.91020 8.64318 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029215 B = 0.003430 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.179484 B = 8161.049382 C = 9096.224351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.105 4.105 3 C -0.067 4.067 4 C -0.150 4.150 5 C 0.145 3.855 6 O -0.496 6.496 7 C -0.184 4.184 8 C 0.553 3.447 9 O -0.562 6.562 10 N -0.706 5.706 11 C 0.122 3.878 12 C 0.432 3.568 13 O -0.623 6.623 14 N -0.558 5.558 15 C -0.338 4.338 16 H 0.087 0.913 17 C -0.011 4.011 18 N -0.916 5.916 19 Si 0.998 3.002 20 H -0.269 1.269 21 H -0.271 1.271 22 H -0.271 1.271 23 C -0.080 4.080 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.168 0.832 28 H 0.160 0.840 29 H 0.406 0.594 30 H 0.411 0.589 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.399 0.601 34 H 0.280 0.720 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 21.104 1.690 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.105 4.105 3 C -0.085 4.085 4 C -0.168 4.168 5 C 0.099 3.901 6 O -0.309 6.309 7 C -0.187 4.187 8 C 0.342 3.658 9 O -0.442 6.442 10 N -0.360 5.360 11 C -0.006 4.006 12 C 0.219 3.781 13 O -0.512 6.512 14 N -0.193 5.193 15 C -0.467 4.467 16 H 0.105 0.895 17 C -0.211 4.211 18 N -0.556 5.556 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.098 4.098 24 H 0.101 0.899 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.186 0.814 28 H 0.178 0.822 29 H 0.266 0.734 30 H 0.251 0.749 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.233 0.767 34 H 0.090 0.910 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.631 21.008 1.094 21.540 hybrid contribution 0.095 -1.324 0.456 1.404 sum -4.536 19.684 1.550 20.259 Atomic orbital electron populations 1.20872 0.88586 1.04064 1.03567 1.20205 0.98026 0.92184 1.00099 1.21541 0.93210 0.98869 0.94907 1.21681 0.95069 0.97488 1.02577 1.18756 0.83634 0.91189 0.96530 1.84699 1.15277 1.96131 1.34770 1.20333 0.94780 0.92513 1.11105 1.18500 0.87102 0.83988 0.76167 1.90754 1.14258 1.87952 1.51262 1.45650 1.11575 1.04297 1.74506 1.20791 0.93426 0.82095 1.04290 1.20354 0.89382 0.84586 0.83744 1.90462 1.17899 1.84694 1.58107 1.41843 1.09912 1.04279 1.63252 1.19796 0.91117 0.85370 1.50401 0.89478 1.26157 0.98471 1.00817 0.95689 1.69690 1.13735 1.22959 1.49212 0.84792 0.77783 0.76960 0.78326 1.19337 1.19640 1.19570 1.21345 0.91675 0.99716 0.97113 0.89910 0.89220 0.91523 0.81448 0.82241 0.73420 0.74938 0.88906 0.88564 0.76692 0.91027 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.00 71.23 0.71 -0.67 16 2 C -0.11 -1.83 5.87 -19.90 -0.12 -1.95 16 3 C -0.07 -0.95 9.68 22.30 0.22 -0.73 16 4 C -0.15 -2.58 9.98 22.34 0.22 -2.35 16 5 C 0.15 3.61 6.72 22.84 0.15 3.76 16 6 O -0.50 -12.97 11.58 -68.81 -0.80 -13.77 16 7 C -0.18 -5.20 5.89 -20.01 -0.12 -5.32 16 8 C 0.55 19.31 7.76 86.70 0.67 19.98 16 9 O -0.56 -22.41 15.16 16.93 0.26 -22.16 16 10 N -0.71 -25.04 5.48 -470.01 -2.57 -27.62 16 11 C 0.12 4.65 6.15 85.63 0.53 5.17 16 12 C 0.43 20.33 7.85 87.65 0.69 21.01 16 13 O -0.62 -32.50 15.24 -3.07 -0.05 -32.55 16 14 N -0.56 -28.31 5.29 -306.98 -1.62 -29.93 16 15 C -0.34 -18.68 9.68 84.04 0.81 -17.86 16 16 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 17 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 18 N -0.92 -48.84 13.05 21.66 0.28 -48.55 16 19 Si 1.00 41.73 29.55 68.60 2.03 43.76 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 23 C -0.08 -1.88 9.18 22.52 0.21 -1.67 16 24 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 26 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 27 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 28 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 29 H 0.41 7.51 9.06 -74.06 -0.67 6.84 16 30 H 0.41 14.24 5.47 -92.71 -0.51 13.74 16 31 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 32 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 33 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 34 H 0.28 13.92 8.31 -92.71 -0.77 13.14 16 35 H 0.13 3.07 6.40 -2.91 -0.02 3.05 16 Total: -1.00 -70.85 311.94 1.23 -69.62 By element: Atomic # 1 Polarization: 42.66 SS G_CDS: -0.74 Total: 41.92 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: 4.45 Total: 19.28 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -3.91 Total: -106.10 kcal Atomic # 8 Polarization: -67.88 SS G_CDS: -0.59 Total: -68.47 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -70.85 1.23 -69.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343515495.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.848 kcal (2) G-P(sol) polarization free energy of solvation -70.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds