Wall clock time and date at job start Tue Mar 31 2020 00:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37715 * 119.96181 * 2 1 4 4 C 1.39715 * 119.91562 * 179.97438 * 3 2 1 5 5 C 1.47599 * 120.08989 * 179.97438 * 4 3 2 6 6 O 1.21580 * 120.00167 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00052 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00055 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46971 * 179.97438 * 8 7 5 10 10 O 1.21292 * 120.00217 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99723 * 179.97438 * 9 8 7 12 12 C 1.37096 * 119.99811 * 179.97438 * 11 9 8 13 13 H 1.08001 * 119.99851 * 359.97438 * 12 11 9 14 14 C 1.38950 * 120.00072 * 179.97438 * 12 11 9 15 15 N 1.31414 * 119.99748 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99898 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47469 * 60.00353 * 16 14 12 18 18 H 1.48508 * 109.46691 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47109 * 299.99624 * 16 14 12 20 20 C 1.39758 * 119.81785 * 359.72414 * 4 3 2 21 21 C 1.37674 * 119.91501 * 0.54839 * 20 4 3 22 22 C 1.38979 * 119.95149 * 179.97438 * 2 1 3 23 23 O 1.35711 * 119.91121 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.47198 * 270.02767 * 1 2 3 25 25 H 1.09002 * 109.47072 * 30.02062 * 1 2 3 26 26 H 1.08989 * 109.47641 * 150.02681 * 1 2 3 27 27 H 1.08006 * 120.04491 * 359.94844 * 3 2 1 28 28 H 0.96998 * 119.99952 * 359.97438 * 7 5 4 29 29 H 1.08999 * 109.47043 * 299.99966 * 8 7 5 30 30 H 1.08997 * 109.47476 * 59.99979 * 8 7 5 31 31 H 0.97002 * 120.00422 * 0.02562 * 11 9 8 32 32 H 0.97001 * 119.99367 * 179.97438 * 15 14 12 33 33 H 1.07998 * 120.03934 * 180.29374 * 20 4 3 34 34 H 1.08002 * 119.96021 * 179.73319 * 21 20 4 35 35 H 0.96694 * 114.00720 * 270.02117 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1931 0.0000 4 6 3.5919 1.1920 0.0005 5 6 4.3330 2.4685 0.0000 6 8 3.7276 3.5228 -0.0005 7 7 5.6807 2.4653 0.0010 8 6 6.4162 3.7322 0.0010 9 6 7.8972 3.4533 0.0029 10 8 8.2988 2.3088 0.0046 11 7 8.7754 4.4757 0.0027 12 6 10.1227 4.2219 0.0050 13 1 10.4803 3.2028 0.0074 14 6 11.0282 5.2759 0.0043 15 7 10.5931 6.5159 0.0019 16 14 12.8639 4.9301 0.0066 17 1 13.2221 4.1487 -1.2043 18 1 13.6095 6.2145 0.0060 19 1 13.2196 4.1525 1.2207 20 6 4.2859 -0.0211 0.0069 21 6 3.5911 -1.2096 0.0012 22 6 2.2009 -1.2042 0.0005 23 8 1.5195 -2.3778 0.0016 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5133 27 1 1.6549 2.1285 -0.0008 28 1 6.1637 1.6241 0.0025 29 1 6.1549 4.3040 -0.8894 30 1 6.1536 4.3049 0.8905 31 1 8.4543 5.3910 0.0018 32 1 11.2252 7.2516 0.0018 33 1 5.3658 -0.0261 0.0122 34 1 4.1266 -2.1475 0.0018 35 1 1.3220 -2.7173 0.8852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344184769.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:26 Heat of formation + Delta-G solvation = -97.993409 kcal Electronic energy + Delta-G solvation = -20238.415454 eV Core-core repulsion = 16815.288794 eV Total energy + Delta-G solvation = -3423.126660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47686 -39.26792 -38.13813 -36.63943 -34.56580 -33.81917 -32.91910 -31.41583 -30.49997 -27.99058 -26.80317 -24.72752 -23.25430 -22.23047 -20.17420 -19.64640 -18.58432 -18.23329 -17.58546 -16.41849 -15.87589 -15.57749 -15.29106 -15.05236 -14.79774 -14.42410 -14.09836 -13.92816 -13.61386 -13.59415 -13.31242 -12.80989 -12.33588 -12.20859 -12.15108 -12.08326 -11.78249 -11.65198 -11.12204 -10.69925 -10.52432 -10.33741 -9.88742 -9.65191 -9.11590 -8.95956 -8.69624 -8.67063 -8.12857 -6.53703 -3.95920 0.58957 1.09906 2.74871 3.12151 3.19804 3.21730 3.30849 3.62923 3.72155 3.91180 4.09206 4.52155 4.61143 4.76345 4.83303 5.02548 5.12161 5.14746 5.32349 5.36415 5.45765 5.68150 5.81576 5.89266 5.92472 6.02007 6.03320 6.13769 6.20106 6.47165 6.61257 7.31583 7.43687 7.73421 7.89031 8.34919 8.42834 9.01906 9.36309 9.83988 10.63062 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.042868 B = 0.002949 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.014107 B = 9491.111856 C =10121.127441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.123 4.123 3 C -0.046 4.046 4 C -0.133 4.133 5 C 0.555 3.445 6 O -0.546 6.546 7 N -0.701 5.701 8 C 0.108 3.892 9 C 0.427 3.573 10 O -0.598 6.598 11 N -0.547 5.547 12 C -0.306 4.306 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.894 5.894 16 Si 0.934 3.066 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.073 4.073 21 C -0.148 4.148 22 C 0.125 3.875 23 O -0.496 6.496 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.141 0.859 28 H 0.410 0.590 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.396 0.604 32 H 0.275 0.725 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.611 -11.938 1.666 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.124 4.124 3 C -0.065 4.065 4 C -0.136 4.136 5 C 0.342 3.658 6 O -0.425 6.425 7 N -0.355 5.355 8 C -0.019 4.019 9 C 0.213 3.787 10 O -0.485 6.485 11 N -0.182 5.182 12 C -0.436 4.436 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.761 3.239 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.091 4.091 21 C -0.167 4.167 22 C 0.080 3.920 23 O -0.306 6.306 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.158 0.842 28 H 0.250 0.750 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.230 0.770 32 H 0.085 0.915 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -16.572 -11.668 1.056 20.295 hybrid contribution 1.075 0.029 0.497 1.185 sum -15.497 -11.639 1.553 19.443 Atomic orbital electron populations 1.20688 0.90209 1.03424 1.02440 1.20169 0.97054 0.92175 1.02985 1.21063 0.92523 0.98027 0.94880 1.19996 0.94266 0.93103 1.06275 1.18115 0.82019 0.88743 0.76901 1.90762 1.68554 1.32468 1.50734 1.45634 1.05608 1.10677 1.73598 1.20991 0.91331 0.86132 1.03471 1.19716 0.86948 0.86306 0.85748 1.90489 1.79333 1.21189 1.57522 1.41786 1.06208 1.07753 1.62450 1.19686 0.80362 0.95082 1.48445 0.87694 1.25334 1.01043 0.94589 0.96704 1.69609 1.36276 0.98436 1.49107 0.85866 0.81318 0.77569 0.79174 1.19746 1.20829 1.19758 1.21328 1.00493 0.91154 0.96165 1.21346 0.93302 0.98986 1.03019 1.18518 0.89745 0.84872 0.98899 1.84727 1.76175 1.36165 1.33564 0.91199 0.91156 0.90802 0.84152 0.75035 0.89600 0.89611 0.76989 0.91491 0.84571 0.84660 0.75191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.78 36.01 0.35 -0.50 16 2 C -0.12 -1.27 5.89 -104.54 -0.62 -1.88 16 3 C -0.05 -0.56 9.23 -39.22 -0.36 -0.92 16 4 C -0.13 -1.80 5.88 -104.96 -0.62 -2.42 16 5 C 0.56 9.14 7.76 -12.44 -0.10 9.04 16 6 O -0.55 -10.39 16.34 5.30 0.09 -10.30 16 7 N -0.70 -11.86 5.48 -62.51 -0.34 -12.20 16 8 C 0.11 2.00 6.15 -5.19 -0.03 1.96 16 9 C 0.43 9.73 7.85 -10.98 -0.09 9.64 16 10 O -0.60 -15.13 15.24 5.55 0.08 -15.04 16 11 N -0.55 -13.49 5.29 -10.96 -0.06 -13.54 16 12 C -0.31 -8.27 9.68 -14.93 -0.14 -8.42 16 13 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 14 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 15 N -0.89 -23.76 13.05 55.50 0.72 -23.04 16 16 Si 0.93 20.41 29.55 -169.99 -5.02 15.39 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 C -0.07 -0.85 9.53 -39.22 -0.37 -1.22 16 21 C -0.15 -1.51 9.97 -39.50 -0.39 -1.91 16 22 C 0.12 1.24 6.68 -39.02 -0.26 0.98 16 23 O -0.50 -4.02 12.52 -18.84 -0.24 -4.25 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.07 0.55 7.52 -51.94 -0.39 0.15 16 27 H 0.14 1.68 7.64 -52.48 -0.40 1.27 16 28 H 0.41 6.71 5.46 -40.82 -0.22 6.49 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 31 H 0.40 9.38 7.90 -40.82 -0.32 9.06 16 32 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.14 1.50 6.40 -52.49 -0.34 1.16 16 34 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.39 1.31 9.06 45.56 0.41 1.72 16 LS Contribution 312.71 15.07 4.71 4.71 Total: -1.00 -32.34 312.71 -5.66 -38.00 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -2.88 Total: 15.33 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -2.73 Total: 4.95 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.32 Total: -48.78 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.06 Total: -29.60 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.34 -5.66 -38.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344184769.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.997 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds