Wall clock time and date at job start Tue Mar 31 2020 00:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37715 * 119.96181 * 2 1 4 4 C 1.39715 * 119.91562 * 179.97438 * 3 2 1 5 5 C 1.47599 * 120.08989 * 179.97438 * 4 3 2 6 6 O 1.21580 * 120.00167 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00052 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00055 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.46971 * 179.97438 * 8 7 5 10 10 O 1.21292 * 120.00217 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99723 * 179.97438 * 9 8 7 12 12 C 1.37096 * 119.99811 * 179.97438 * 11 9 8 13 13 H 1.08001 * 119.99851 * 359.97438 * 12 11 9 14 14 C 1.38950 * 120.00072 * 179.97438 * 12 11 9 15 15 N 1.31414 * 119.99748 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99898 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47469 * 60.00353 * 16 14 12 18 18 H 1.48508 * 109.46691 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47109 * 299.99624 * 16 14 12 20 20 C 1.39758 * 119.81785 * 359.72414 * 4 3 2 21 21 C 1.37674 * 119.91501 * 0.54839 * 20 4 3 22 22 C 1.38979 * 119.95149 * 179.97438 * 2 1 3 23 23 O 1.35711 * 119.91121 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.47198 * 270.02767 * 1 2 3 25 25 H 1.09002 * 109.47072 * 30.02062 * 1 2 3 26 26 H 1.08989 * 109.47641 * 150.02681 * 1 2 3 27 27 H 1.08006 * 120.04491 * 359.94844 * 3 2 1 28 28 H 0.96998 * 119.99952 * 359.97438 * 7 5 4 29 29 H 1.08999 * 109.47043 * 299.99966 * 8 7 5 30 30 H 1.08997 * 109.47476 * 59.99979 * 8 7 5 31 31 H 0.97002 * 120.00422 * 0.02562 * 11 9 8 32 32 H 0.97001 * 119.99367 * 179.97438 * 15 14 12 33 33 H 1.07998 * 120.03934 * 180.29374 * 20 4 3 34 34 H 1.08002 * 119.96021 * 179.73319 * 21 20 4 35 35 H 0.96694 * 114.00720 * 270.02117 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1931 0.0000 4 6 3.5919 1.1920 0.0005 5 6 4.3330 2.4685 0.0000 6 8 3.7276 3.5228 -0.0005 7 7 5.6807 2.4653 0.0010 8 6 6.4162 3.7322 0.0010 9 6 7.8972 3.4533 0.0029 10 8 8.2988 2.3088 0.0046 11 7 8.7754 4.4757 0.0027 12 6 10.1227 4.2219 0.0050 13 1 10.4803 3.2028 0.0074 14 6 11.0282 5.2759 0.0043 15 7 10.5931 6.5159 0.0019 16 14 12.8639 4.9301 0.0066 17 1 13.2221 4.1487 -1.2043 18 1 13.6095 6.2145 0.0060 19 1 13.2196 4.1525 1.2207 20 6 4.2859 -0.0211 0.0069 21 6 3.5911 -1.2096 0.0012 22 6 2.2009 -1.2042 0.0005 23 8 1.5195 -2.3778 0.0016 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5133 27 1 1.6549 2.1285 -0.0008 28 1 6.1637 1.6241 0.0025 29 1 6.1549 4.3040 -0.8894 30 1 6.1536 4.3049 0.8905 31 1 8.4543 5.3910 0.0018 32 1 11.2252 7.2516 0.0018 33 1 5.3658 -0.0261 0.0122 34 1 4.1266 -2.1475 0.0018 35 1 1.3220 -2.7173 0.8852 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344184769.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:25 Heat of formation + Delta-G solvation = -122.965227 kcal Electronic energy + Delta-G solvation = -20239.498314 eV Core-core repulsion = 16815.288794 eV Total energy + Delta-G solvation = -3424.209519 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.53033 -40.52651 -39.76746 -37.46419 -36.30010 -35.44751 -33.77321 -33.37666 -31.46554 -29.38371 -27.71856 -26.49552 -24.37371 -23.08655 -21.42887 -21.33807 -20.11203 -19.32652 -18.94280 -17.59279 -17.32819 -16.81323 -16.59374 -16.34626 -16.28806 -15.86919 -15.53013 -15.35371 -14.91173 -14.41575 -14.22608 -13.93115 -13.67146 -13.60730 -13.55065 -13.02949 -12.91648 -12.83135 -12.72896 -12.47939 -12.14040 -11.57356 -11.44018 -11.20644 -10.58717 -10.32912 -10.10904 -9.94297 -9.60499 -8.51991 -6.02441 -0.33026 0.26156 1.37448 1.42528 1.53418 1.66607 1.89132 1.94076 2.30463 2.67379 3.08272 3.15185 3.18619 3.64747 3.74266 3.84978 4.16008 4.18999 4.31404 4.38586 4.39603 4.59778 4.74740 4.82536 4.89216 5.14233 5.16068 5.24871 5.26149 5.37258 5.39528 5.71516 5.90112 6.40074 6.47646 6.80952 7.01501 7.04238 7.42218 7.92159 8.64693 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.042868 B = 0.002949 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.014107 B = 9491.111856 C =10121.127441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.126 4.126 3 C -0.053 4.053 4 C -0.157 4.157 5 C 0.557 3.443 6 O -0.577 6.577 7 N -0.702 5.702 8 C 0.120 3.880 9 C 0.432 3.568 10 O -0.624 6.624 11 N -0.558 5.558 12 C -0.339 4.339 13 H 0.087 0.913 14 C -0.010 4.010 15 N -0.916 5.916 16 Si 0.997 3.003 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.269 1.269 20 C -0.075 4.075 21 C -0.149 4.149 22 C 0.137 3.863 23 O -0.498 6.498 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.413 0.587 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.399 0.601 32 H 0.280 0.720 33 H 0.138 0.862 34 H 0.157 0.843 35 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.340 -13.342 1.835 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.126 4.126 3 C -0.072 4.072 4 C -0.160 4.160 5 C 0.347 3.653 6 O -0.458 6.458 7 N -0.356 5.356 8 C -0.008 4.008 9 C 0.219 3.781 10 O -0.512 6.512 11 N -0.193 5.193 12 C -0.468 4.468 13 H 0.105 0.895 14 C -0.211 4.211 15 N -0.556 5.556 16 Si 0.820 3.180 17 H -0.195 1.195 18 H -0.196 1.196 19 H -0.194 1.194 20 C -0.093 4.093 21 C -0.168 4.168 22 C 0.092 3.908 23 O -0.312 6.312 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.154 0.846 28 H 0.253 0.747 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.233 0.767 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.174 0.826 35 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -17.326 -13.089 1.242 21.750 hybrid contribution 1.172 0.342 0.454 1.303 sum -16.154 -12.747 1.696 20.648 Atomic orbital electron populations 1.20737 0.88276 1.03858 1.03637 1.20420 0.98444 0.91586 1.02179 1.21109 0.92028 0.98773 0.95266 1.19830 0.94722 0.92141 1.09300 1.18556 0.81544 0.89567 0.75664 1.90734 1.68953 1.33858 1.52303 1.45631 1.05926 1.10102 1.73981 1.20830 0.88236 0.87211 1.04514 1.20362 0.88469 0.85502 0.83723 1.90465 1.80384 1.22217 1.58112 1.41834 1.05944 1.08258 1.63275 1.19718 0.81793 0.94732 1.50537 0.89467 1.26143 1.05052 0.94204 0.95699 1.69677 1.37751 0.99039 1.49129 0.84924 0.76103 0.77803 0.79141 1.19457 1.19635 1.19422 1.21373 1.00679 0.91132 0.96149 1.21573 0.93678 0.99158 1.02346 1.18579 0.89750 0.85420 0.97040 1.84671 1.75751 1.35143 1.35653 0.89545 0.90921 0.90162 0.84619 0.74703 0.88555 0.88476 0.76664 0.91022 0.84404 0.82557 0.72386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.78 71.24 0.70 -0.71 16 2 C -0.13 -2.35 5.89 -19.81 -0.12 -2.46 16 3 C -0.05 -1.25 9.23 22.50 0.21 -1.04 16 4 C -0.16 -4.21 5.88 -20.08 -0.12 -4.32 16 5 C 0.56 18.48 7.76 86.71 0.67 19.15 16 6 O -0.58 -22.21 16.34 -3.97 -0.06 -22.27 16 7 N -0.70 -23.86 5.48 -469.95 -2.57 -26.43 16 8 C 0.12 4.42 6.15 85.63 0.53 4.95 16 9 C 0.43 19.94 7.85 87.66 0.69 20.63 16 10 O -0.62 -31.98 15.24 -3.07 -0.05 -32.02 16 11 N -0.56 -27.96 5.29 -306.98 -1.62 -29.58 16 12 C -0.34 -18.58 9.68 84.04 0.81 -17.76 16 13 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 14 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 15 N -0.92 -48.59 13.05 21.66 0.28 -48.31 16 16 Si 1.00 41.52 29.55 68.60 2.03 43.55 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 18 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 C -0.07 -1.68 9.53 22.50 0.21 -1.46 16 21 C -0.15 -2.73 9.97 22.32 0.22 -2.51 16 22 C 0.14 2.39 6.68 22.64 0.15 2.54 16 23 O -0.50 -6.37 12.52 -90.32 -1.13 -7.50 16 24 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 26 H 0.08 0.95 7.52 -2.39 -0.02 0.94 16 27 H 0.14 3.25 7.64 -2.91 -0.02 3.23 16 28 H 0.41 13.61 5.46 -92.71 -0.51 13.11 16 29 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 30 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 31 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 32 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 33 H 0.14 2.97 6.40 -2.91 -0.02 2.96 16 34 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.42 1.21 9.06 -74.06 -0.67 0.54 16 Total: -1.00 -68.85 312.71 0.56 -68.29 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -0.74 Total: 37.34 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 4.43 Total: 16.94 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -3.91 Total: -104.32 kcal Atomic # 8 Polarization: -60.56 SS G_CDS: -1.24 Total: -61.80 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -68.85 0.56 -68.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344184769.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.670 kcal (2) G-P(sol) polarization free energy of solvation -68.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds